RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 C2orf48Q96LS8 159 aa8.48□□□□□ -1.05
CLK3-214ENST00000564096 DLEU1O43261 78 aa8.47□□□□□ -1.05
CLK3-214ENST00000564096 PCP2Q8IVA1 136 aa8.47□□□□□ -1.05
CLK3-214ENST00000564096 CAMK2N2Q96S95 79 aa8.47□□□□□ -1.05
CLK3-214ENST00000564096 UQCR10Q9UDW1 63 aa8.47□□□□□ -1.05
CLK3-214ENST00000564096 LINC00587B1AMM8 73 aa8.46□□□□□ -1.06
CLK3-214ENST00000564096 EREGO14944 169 aa8.46□□□□□ -1.06
CLK3-214ENST00000564096 BOD1L2Q8IYS8 172 aa8.46□□□□□ -1.06
CLK3-214ENST00000564096 MAPKAPK5-AS1Q8N8E1 139 aa8.46□□□□□ -1.06
CLK3-214ENST00000564096 C14orf144Q96I85 54 aa8.46□□□□□ -1.06
CLK3-214ENST00000564096 LECT2O14960 151 aa8.45□□□□□ -1.06
CLK3-214ENST00000564096 KIAA0087Q14695 138 aa8.45□□□□□ -1.06
CLK3-214ENST00000564096 MEIG1Q5JSS6 88 aa8.45□□□□□ -1.06
CLK3-214ENST00000564096 NTN5Q8WTR8 489 aaPredicted RBP8.45□□□□□ -1.06
CLK3-214ENST00000564096 ZNF625Q96I27 306 aaPredicted RBP8.45□□□□□ -1.06
CLK3-214ENST00000564096 DNAH6Q9C0G6 4158 aa8.45□□□□□ -1.06
CLK3-214ENST00000564096 TRBV30A0A0K0K1B3 111 aa8.44□□□□□ -1.06
CLK3-214ENST00000564096 CIRBPQ14011 172 aaKnown RBP8.44□□□□□ -1.06
CLK3-214ENST00000564096 CARD19Q96LW7 228 aa8.44□□□□□ -1.06
CLK3-214ENST00000564096 TTTY13Q9BZ97 58 aa8.44□□□□□ -1.06
CLK3-214ENST00000564096 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.43□□□□□ -1.06
CLK3-214ENST00000564096 TMEM238C9JI98 176 aa8.43□□□□□ -1.06
CLK3-214ENST00000564096 GCSHP23434 173 aa8.43□□□□□ -1.06
CLK3-214ENST00000564096 SYCNQ0VAF6 134 aa8.43□□□□□ -1.06
CLK3-214ENST00000564096 PRO1933Q9H354 126 aa8.43□□□□□ -1.06
CLK3-214ENST00000564096 PKIGQ9Y2B9 76 aa8.43□□□□□ -1.06
CLK3-214ENST00000564096 A0A087WTM6 91 aa8.42□□□□□ -1.06
CLK3-214ENST00000564096 A0A0J9YXY3 114 aa8.42□□□□□ -1.06
CLK3-214ENST00000564096 LRCOL1A6NCL2 159 aa8.42□□□□□ -1.06
CLK3-214ENST00000564096 HNRNPA3P51991 378 aaKnown RBP8.42□□□□□ -1.06
CLK3-214ENST00000564096 C2orf82Q6UX34 121 aa8.42□□□□□ -1.06
CLK3-214ENST00000564096 LINC00526Q96FQ7 95 aa8.42□□□□□ -1.06
CLK3-214ENST00000564096 MIEN1Q9BRT3 115 aa8.42□□□□□ -1.06
CLK3-214ENST00000564096 TIMM17BO60830 172 aa8.41□□□□□ -1.06
CLK3-214ENST00000564096 CNBPP62633 177 aaKnown RBP8.41□□□□□ -1.06
CLK3-214ENST00000564096 WFDC2Q14508 124 aa8.41□□□□□ -1.06
CLK3-214ENST00000564096 Q8N814 137 aa8.41□□□□□ -1.06
CLK3-214ENST00000564096 ERG28Q9UKR5 140 aa8.41□□□□□ -1.06
CLK3-214ENST00000564096 COX17Q14061 63 aa8.4□□□□□ -1.06
CLK3-214ENST00000564096 UNQ6190/PRO20217Q6UXQ8 127 aa8.4□□□□□ -1.06
CLK3-214ENST00000564096 Q6ZRU5 148 aa8.4□□□□□ -1.06
CLK3-214ENST00000564096 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.39□□□□□ -1.07
CLK3-214ENST00000564096 RNF151Q2KHN1 245 aa8.39□□□□□ -1.07
CLK3-214ENST00000564096 LINC00336Q6ZUF6 198 aa8.39□□□□□ -1.07
CLK3-214ENST00000564096 COPS9Q8WXC6 57 aa8.39□□□□□ -1.07
CLK3-214ENST00000564096 HIGD1BQ9P298 99 aa8.39□□□□□ -1.07
CLK3-214ENST00000564096 C6orf48Q9UBA6 75 aa8.39□□□□□ -1.07
CLK3-214ENST00000564096 TP73-AS1Q9UF72 201 aa8.39□□□□□ -1.07
CLK3-214ENST00000564096 RTL8CO15255 209 aa8.38□□□□□ -1.07
CLK3-214ENST00000564096 LINC00158P58513 81 aa8.38□□□□□ -1.07
CLK3-214ENST00000564096 Q6ZVH6 145 aa8.38□□□□□ -1.07
CLK3-214ENST00000564096 PFN2P35080 140 aa8.37□□□□□ -1.07
CLK3-214ENST00000564096 C10orf25Q5T742 122 aa8.37□□□□□ -1.07
CLK3-214ENST00000564096 SPANXB1Q9NS25 103 aaPredicted RBP8.37□□□□□ -1.07
CLK3-214ENST00000564096 SACSQ9NZJ4 4579 aa8.36□□□□□ -1.07
CLK3-214ENST00000564096 SMIM13P0DJ93 91 aa8.36□□□□□ -1.07
CLK3-214ENST00000564096 DDTP30046 118 aa8.36□□□□□ -1.07
CLK3-214ENST00000564096 TNP2Q05952 138 aa8.36□□□□□ -1.07
CLK3-214ENST00000564096 SRSF9Q13242 221 aaKnown RBP eCLIP8.36□□□□□ -1.07
CLK3-214ENST00000564096 C2orf91Q6ZV80 131 aa8.36□□□□□ -1.07
CLK3-214ENST00000564096 SPANXDQ9BXN6 97 aa8.36□□□□□ -1.07
CLK3-214ENST00000564096 SPANXCQ9NY87 97 aa8.36□□□□□ -1.07
CLK3-214ENST00000564096 KMT2AQ03164 3969 aa8.35□□□□□ -1.07
CLK3-214ENST00000564096 NDUFC2-KCTD14E9PQ53 114 aa8.35□□□□□ -1.07
CLK3-214ENST00000564096 HSD52Q0P140 79 aa8.35□□□□□ -1.07
CLK3-214ENST00000564096 HIST1H4GQ99525 98 aa8.35□□□□□ -1.07
CLK3-214ENST00000564096 A0A0U1RRA0 63 aa8.34□□□□□ -1.07
CLK3-214ENST00000564096 LOC107984640A0A0U1RRK4 108 aa8.34□□□□□ -1.07
CLK3-214ENST00000564096 IFITM1P13164 125 aa8.34□□□□□ -1.07
CLK3-214ENST00000564096 RPL18AQ02543 176 aaKnown RBP8.34□□□□□ -1.07
CLK3-214ENST00000564096 TAL2Q16559 108 aa8.34□□□□□ -1.07
CLK3-214ENST00000564096 C9orf116Q5BN46 136 aaPredicted RBP8.34□□□□□ -1.07
CLK3-214ENST00000564096 MIR7-3HGQ8N6C7 128 aa8.34□□□□□ -1.07
CLK3-214ENST00000564096 LITAFQ99732 161 aa8.34□□□□□ -1.07
CLK3-214ENST00000564096 RYR2Q92736 4967 aa8.34□□□□□ -1.07
CLK3-214ENST00000564096 HYDINQ4G0P3 5121 aa8.34□□□□□ -1.07
CLK3-214ENST00000564096 IGLV5-52A0A0A0MRZ9 124 aa8.33□□□□□ -1.08
CLK3-214ENST00000564096 SLPIP03973 132 aa8.33□□□□□ -1.08
CLK3-214ENST00000564096 TLX1NBP0CAT3 122 aa8.33□□□□□ -1.08
CLK3-214ENST00000564096 KRTAP17-1Q9BYP8 105 aa8.33□□□□□ -1.08
CLK3-214ENST00000564096 M0R143 59 aa8.32□□□□□ -1.08
CLK3-214ENST00000564096 TMEM238LA0A1B0GVL6 79 aa8.31□□□□□ -1.08
CLK3-214ENST00000564096 RPL24P83731 157 aaKnown RBP8.31□□□□□ -1.08
CLK3-214ENST00000564096 DAND5Q8N907 189 aa8.31□□□□□ -1.08
CLK3-214ENST00000564096 C9orf163Q8N9P6 203 aa8.31□□□□□ -1.08
CLK3-214ENST00000564096 PPDPFQ9H3Y8 114 aa8.31□□□□□ -1.08
CLK3-214ENST00000564096 DNAH10Q8IVF4 4471 aa8.31□□□□□ -1.08
CLK3-214ENST00000564096 PCP4L1A6NKN8 68 aa8.3□□□□□ -1.08
CLK3-214ENST00000564096 CTAG1AP78358 180 aa8.3□□□□□ -1.08
CLK3-214ENST00000564096 ADAMTSL4-AS1Q5T5F5 129 aa8.3□□□□□ -1.08
CLK3-214ENST00000564096 LINC00308Q8TCZ7 52 aa8.3□□□□□ -1.08
CLK3-214ENST00000564096 DNAH2Q9P225 4427 aa8.29□□□□□ -1.08
CLK3-214ENST00000564096 LCE2BO14633 110 aa8.29□□□□□ -1.08
CLK3-214ENST00000564096 PTTG1IPP53801 180 aa8.29□□□□□ -1.08
CLK3-214ENST00000564096 NPC2P61916 151 aa8.29□□□□□ -1.08
CLK3-214ENST00000564096 GAGE2EQ4V326 116 aa8.29□□□□□ -1.08
CLK3-214ENST00000564096 CEND1Q8N111 149 aa8.29□□□□□ -1.08
CLK3-214ENST00000564096 SND1-IT1Q9HBX3 110 aa8.29□□□□□ -1.08
CLK3-214ENST00000564096 LINC00474Q9P2X8 69 aa8.29□□□□□ -1.08
CLK3-214ENST00000564096 GAGE2DQ9UEU5 116 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 133.7 ms