RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 TRAV9-1A0A075B6T8 112 aa10.79□□□□□ -0.68
NME3-205ENST00000563854 SEC11AP67812 179 aa10.79□□□□□ -0.68
NME3-205ENST00000563854 C9orf129Q5T035 196 aaKnown RBP10.79□□□□□ -0.68
NME3-205ENST00000563854 KRTAP7-1Q8IUC3 87 aa10.79□□□□□ -0.68
NME3-205ENST00000563854 FAM19A3Q7Z5A8 133 aa10.78□□□□□ -0.68
NME3-205ENST00000563854 COMMD7Q86VX2 200 aa10.78□□□□□ -0.68
NME3-205ENST00000563854 Q8IZM0 81 aa10.78□□□□□ -0.68
NME3-205ENST00000563854 DIRC1Q969H9 104 aa10.78□□□□□ -0.68
NME3-205ENST00000563854 SEC11CQ9BY50 192 aa10.78□□□□□ -0.68
NME3-205ENST00000563854 ERASQ7Z444 233 aa10.77□□□□□ -0.69
NME3-205ENST00000563854 GNB1LQ9BYB4 327 aa10.76□□□□□ -0.69
NME3-205ENST00000563854 XAGE1AQ9HD64 81 aa10.76□□□□□ -0.69
NME3-205ENST00000563854 F8VRH5 84 aa10.74□□□□□ -0.69
NME3-205ENST00000563854 H0Y9J4 135 aa10.74□□□□□ -0.69
NME3-205ENST00000563854 FA2HQ7L5A8 372 aa10.74□□□□□ -0.69
NME3-205ENST00000563854 MRPL18Q9H0U6 180 aaKnown RBP10.74□□□□□ -0.69
NME3-205ENST00000563854 SMCO4Q9NRQ5 59 aa10.74□□□□□ -0.69
NME3-205ENST00000563854 FABP9Q0Z7S8 132 aa10.73□□□□□ -0.69
NME3-205ENST00000563854 PRR26Q8N8Z3 221 aa10.73□□□□□ -0.69
NME3-205ENST00000563854 RPS10P5Q9NQ39 176 aa10.73□□□□□ -0.69
NME3-205ENST00000563854 SMIM1B2RUZ4 78 aa10.72□□□□□ -0.69
NME3-205ENST00000563854 TINCRA0A1B0GVN0 87 aa10.71□□□□□ -0.69
NME3-205ENST00000563854 CXCL5P42830 114 aa10.71□□□□□ -0.69
NME3-205ENST00000563854 COX19Q49B96 90 aa10.71□□□□□ -0.69
NME3-205ENST00000563854 SPINK8P0C7L1 97 aa10.7□□□□□ -0.7
NME3-205ENST00000563854 COX7B2Q8TF08 81 aa10.7□□□□□ -0.7
NME3-205ENST00000563854 CST9LQ9H4G1 147 aa10.7□□□□□ -0.7
NME3-205ENST00000563854 C22orf24Q9Y442 160 aa10.7□□□□□ -0.7
NME3-205ENST00000563854 LRP2P98164 4655 aa10.7□□□□□ -0.7
NME3-205ENST00000563854 LINC01546A6NGU7 62 aa10.69□□□□□ -0.7
NME3-205ENST00000563854 LINC01549A6NIU2 74 aa10.69□□□□□ -0.7
NME3-205ENST00000563854 RHEBQ15382 184 aa10.69□□□□□ -0.7
NME3-205ENST00000563854 PDZD11Q5EBL8 140 aa10.69□□□□□ -0.7
NME3-205ENST00000563854 PMVKQ15126 192 aa10.68□□□□□ -0.7
NME3-205ENST00000563854 NDUFA6P56556 154 aa10.67□□□□□ -0.7
NME3-205ENST00000563854 LBHQ53QV2 105 aaPredicted RBP10.67□□□□□ -0.7
NME3-205ENST00000563854 IGLV5-45A0A087WSX0 123 aa10.66□□□□□ -0.7
NME3-205ENST00000563854 RAB5BP61020 215 aa10.66□□□□□ -0.7
NME3-205ENST00000563854 CARHSP1Q9Y2V2 147 aaKnown RBP10.66□□□□□ -0.7
NME3-205ENST00000563854 C10orf91Q5T1B1 145 aa10.65□□□□□ -0.7
NME3-205ENST00000563854 MRPL55Q7Z7F7 128 aaKnown RBP10.65□□□□□ -0.7
NME3-205ENST00000563854 H3BRM9 83 aa10.64□□□□□ -0.71
NME3-205ENST00000563854 TRAPPC1Q9Y5R8 145 aa10.64□□□□□ -0.71
NME3-205ENST00000563854 IGLV1-50A0A075B6I6 118 aa10.63□□□□□ -0.71
NME3-205ENST00000563854 GAGE10A6NGK3 116 aa10.63□□□□□ -0.71
NME3-205ENST00000563854 NUPR1O60356 82 aa10.63□□□□□ -0.71
NME3-205ENST00000563854 KRTAP1-4P0C5Y4 121 aa10.63□□□□□ -0.71
NME3-205ENST00000563854 ZNF861PO60384 105 aa10.62□□□□□ -0.71
NME3-205ENST00000563854 PMCHL1Q16048 86 aa10.62□□□□□ -0.71
NME3-205ENST00000563854 RPL37AP8A6NKH3 93 aa10.61□□□□□ -0.71
NME3-205ENST00000563854 ATP5LO75964 103 aa10.61□□□□□ -0.71
NME3-205ENST00000563854 C18orf32Q8TCD1 76 aa10.61□□□□□ -0.71
NME3-205ENST00000563854 TP73-AS1Q9UF72 201 aa10.61□□□□□ -0.71
NME3-205ENST00000563854 A0A096LNJ9 63 aa10.6□□□□□ -0.71
NME3-205ENST00000563854 APOC3P02656 99 aa10.6□□□□□ -0.71
NME3-205ENST00000563854 RNF213Q63HN8 5207 aa10.59□□□□□ -0.71
NME3-205ENST00000563854 HBDP02042 147 aa10.59□□□□□ -0.71
NME3-205ENST00000563854 LINC00614P0C842 121 aa10.59□□□□□ -0.71
NME3-205ENST00000563854 IGLC3P0DOY3 106 aa10.59□□□□□ -0.71
NME3-205ENST00000563854 PFN2P35080 140 aa10.59□□□□□ -0.71
NME3-205ENST00000563854 NKAPP1Q8N9T2 125 aa10.59□□□□□ -0.71
NME3-205ENST00000563854 URB1-AS1Q96HZ7 61 aa10.59□□□□□ -0.71
NME3-205ENST00000563854 LINC00167Q96N53 147 aa10.59□□□□□ -0.71
NME3-205ENST00000563854 ZNF22P17026 224 aaPredicted RBP10.58□□□□□ -0.72
NME3-205ENST00000563854 RPL13AP40429 203 aaKnown RBP10.58□□□□□ -0.72
NME3-205ENST00000563854 BCE1O60756 84 aa10.57□□□□□ -0.72
NME3-205ENST00000563854 RPL28P46779 137 aaKnown RBP10.57□□□□□ -0.72
NME3-205ENST00000563854 NDUFA5Q16718 116 aa10.57□□□□□ -0.72
NME3-205ENST00000563854 IGLV5-39A0A0G2JS06 123 aa10.55□□□□□ -0.72
NME3-205ENST00000563854 SCO1O75880 301 aa10.55□□□□□ -0.72
NME3-205ENST00000563854 SNAPINO95295 136 aa10.55□□□□□ -0.72
NME3-205ENST00000563854 BAGE3Q86Y29 109 aa10.55□□□□□ -0.72
NME3-205ENST00000563854 ZNF625Q96I27 306 aaPredicted RBP10.55□□□□□ -0.72
NME3-205ENST00000563854 TMEM170BQ5T4T1 132 aa10.54□□□□□ -0.72
NME3-205ENST00000563854 SVBPQ8N300 66 aa10.54□□□□□ -0.72
NME3-205ENST00000563854 IGLV5-37A0A075B6J1 123 aa10.53□□□□□ -0.72
NME3-205ENST00000563854 IGKV2-28A0A075B6P5 120 aa10.53□□□□□ -0.72
NME3-205ENST00000563854 C11orf86A6NJI1 115 aa10.53□□□□□ -0.72
NME3-205ENST00000563854 IGKV2D-28P01615 120 aa10.53□□□□□ -0.72
NME3-205ENST00000563854 UBE2AP49459 152 aa10.53□□□□□ -0.72
NME3-205ENST00000563854 ERG28Q9UKR5 140 aa10.53□□□□□ -0.72
NME3-205ENST00000563854 PRR4Q16378 134 aa10.5□□□□□ -0.73
NME3-205ENST00000563854 SND1-IT1Q9HBX3 110 aa10.5□□□□□ -0.73
NME3-205ENST00000563854 LPAP08519 4548 aa10.49□□□□□ -0.73
NME3-205ENST00000563854 CHTOPQ9Y3Y2 248 aaKnown RBP10.49□□□□□ -0.73
NME3-205ENST00000563854 A0A087X002 238 aa10.48□□□□□ -0.73
NME3-205ENST00000563854 TSPAN13O95857 204 aa10.48□□□□□ -0.73
NME3-205ENST00000563854 ANAPC11Q9NYG5 84 aa10.48□□□□□ -0.73
NME3-205ENST00000563854 VPREB1P12018 145 aa10.47□□□□□ -0.73
NME3-205ENST00000563854 CRYGAP11844 174 aa10.46□□□□□ -0.73
NME3-205ENST00000563854 PRLHP81277 87 aa10.46□□□□□ -0.73
NME3-205ENST00000563854 RPL24P83731 157 aaKnown RBP10.46□□□□□ -0.73
NME3-205ENST00000563854 COX17Q14061 63 aa10.46□□□□□ -0.73
NME3-205ENST00000563854 TYMSOSQ8TAI1 123 aa10.46□□□□□ -0.73
NME3-205ENST00000563854 A0A0U1RRA0 63 aa10.45□□□□□ -0.74
NME3-205ENST00000563854 TMEM238C9JI98 176 aa10.45□□□□□ -0.74
NME3-205ENST00000563854 LINC00158P58513 81 aa10.45□□□□□ -0.74
NME3-205ENST00000563854 FAM19A1Q7Z5A9 133 aa10.45□□□□□ -0.74
NME3-205ENST00000563854 IFI27L1Q96BM0 104 aa10.45□□□□□ -0.74
NME3-205ENST00000563854 SFTA2Q6UW10 78 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms