RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 MT-ND4LP03901 98 aa9.43□□□□□ -0.9
CLK3-211ENST00000563297 NPSP0C0P6 89 aa9.43□□□□□ -0.9
CLK3-211ENST00000563297 CKS1BP61024 79 aa9.43□□□□□ -0.9
CLK3-211ENST00000563297 LINC00469Q8N7U9 141 aa9.43□□□□□ -0.9
CLK3-211ENST00000563297 C10orf91Q5T1B1 145 aa9.42□□□□□ -0.9
CLK3-211ENST00000563297 Q8IZM0 81 aa9.42□□□□□ -0.9
CLK3-211ENST00000563297 ALKBH7Q9BT30 221 aaPredicted RBP9.42□□□□□ -0.9
CLK3-211ENST00000563297 CARHSP1Q9Y2V2 147 aaKnown RBP9.42□□□□□ -0.9
CLK3-211ENST00000563297 C22orf24Q9Y442 160 aa9.42□□□□□ -0.9
CLK3-211ENST00000563297 ADCYAP1P18509 176 aa9.41□□□□□ -0.9
CLK3-211ENST00000563297 SVBPQ8N300 66 aa9.41□□□□□ -0.9
CLK3-211ENST00000563297 CDKN2A-AS1Q9UH64 79 aa9.41□□□□□ -0.9
CLK3-211ENST00000563297 ZNF861PO60384 105 aa9.4□□□□□ -0.9
CLK3-211ENST00000563297 SNAPINO95295 136 aa9.4□□□□□ -0.9
CLK3-211ENST00000563297 HERVK_113P63121 156 aa9.4□□□□□ -0.9
CLK3-211ENST00000563297 XAGE1AQ9HD64 81 aa9.4□□□□□ -0.9
CLK3-211ENST00000563297 NXT2Q9NPJ8 142 aaKnown RBP9.4□□□□□ -0.9
CLK3-211ENST00000563297 RPL13AP40429 203 aaKnown RBP9.39□□□□□ -0.91
CLK3-211ENST00000563297 SEC11AP67812 179 aa9.39□□□□□ -0.91
CLK3-211ENST00000563297 CTDSP1Q9GZU7 261 aa9.39□□□□□ -0.91
CLK3-211ENST00000563297 LBHQ53QV2 105 aaPredicted RBP9.38□□□□□ -0.91
CLK3-211ENST00000563297 PAPPA-AS1Q5QFB9 102 aa9.38□□□□□ -0.91
CLK3-211ENST00000563297 F8VRH5 84 aa9.37□□□□□ -0.91
CLK3-211ENST00000563297 NUPR1O60356 82 aa9.37□□□□□ -0.91
CLK3-211ENST00000563297 G0S2P27469 103 aa9.37□□□□□ -0.91
CLK3-211ENST00000563297 TOMM6Q96B49 74 aa9.37□□□□□ -0.91
CLK3-211ENST00000563297 TIMM17AQ99595 171 aa9.37□□□□□ -0.91
CLK3-211ENST00000563297 GEMIN7Q9H840 131 aaKnown RBP9.37□□□□□ -0.91
CLK3-211ENST00000563297 KIAA1644Q3SXP7 199 aa9.36□□□□□ -0.91
CLK3-211ENST00000563297 RPS10P5Q9NQ39 176 aa9.36□□□□□ -0.91
CLK3-211ENST00000563297 PRR4Q16378 134 aa9.35□□□□□ -0.91
CLK3-211ENST00000563297 TP73-AS1Q9UF72 201 aa9.35□□□□□ -0.91
CLK3-211ENST00000563297 RHEBQ15382 184 aa9.34□□□□□ -0.91
CLK3-211ENST00000563297 ERASQ7Z444 233 aa9.34□□□□□ -0.91
CLK3-211ENST00000563297 MRPL55Q7Z7F7 128 aaKnown RBP9.34□□□□□ -0.91
CLK3-211ENST00000563297 SMIM1B2RUZ4 78 aa9.33□□□□□ -0.92
CLK3-211ENST00000563297 CXCL5P42830 114 aa9.33□□□□□ -0.92
CLK3-211ENST00000563297 SCGB3A1Q96QR1 104 aa9.33□□□□□ -0.92
CLK3-211ENST00000563297 LINC00167Q96N53 147 aa9.32□□□□□ -0.92
CLK3-211ENST00000563297 TINCRA0A1B0GVN0 87 aa9.31□□□□□ -0.92
CLK3-211ENST00000563297 BCE1O60756 84 aa9.31□□□□□ -0.92
CLK3-211ENST00000563297 PDZD11Q5EBL8 140 aa9.31□□□□□ -0.92
CLK3-211ENST00000563297 COX7B2Q8TF08 81 aa9.31□□□□□ -0.92
CLK3-211ENST00000563297 IGLV5-45A0A087WSX0 123 aa9.3□□□□□ -0.92
CLK3-211ENST00000563297 A0A087X002 238 aa9.3□□□□□ -0.92
CLK3-211ENST00000563297 RPL37AP8A6NKH3 93 aa9.3□□□□□ -0.92
CLK3-211ENST00000563297 TSPAN13O95857 204 aa9.3□□□□□ -0.92
CLK3-211ENST00000563297 RPL28P46779 137 aaKnown RBP9.3□□□□□ -0.92
CLK3-211ENST00000563297 SMCO4Q9NRQ5 59 aa9.3□□□□□ -0.92
CLK3-211ENST00000563297 LINC01546A6NGU7 62 aa9.29□□□□□ -0.92
CLK3-211ENST00000563297 SCO1O75880 301 aa9.29□□□□□ -0.92
CLK3-211ENST00000563297 TRAV9-1A0A075B6T8 112 aa9.28□□□□□ -0.92
CLK3-211ENST00000563297 RAB5BP61020 215 aa9.28□□□□□ -0.92
CLK3-211ENST00000563297 CST9LQ9H4G1 147 aa9.28□□□□□ -0.92
CLK3-211ENST00000563297 GAGE10A6NGK3 116 aa9.27□□□□□ -0.93
CLK3-211ENST00000563297 LINC01549A6NIU2 74 aa9.27□□□□□ -0.93
CLK3-211ENST00000563297 SPINK8P0C7L1 97 aa9.27□□□□□ -0.93
CLK3-211ENST00000563297 S100PP25815 95 aa9.27□□□□□ -0.93
CLK3-211ENST00000563297 MUC2Q02817 5179 aa9.27□□□□□ -0.93
CLK3-211ENST00000563297 IGLV5-37A0A075B6J1 123 aa9.26□□□□□ -0.93
CLK3-211ENST00000563297 CRYGAP11844 174 aa9.26□□□□□ -0.93
CLK3-211ENST00000563297 TYMSOSQ8TAI1 123 aa9.26□□□□□ -0.93
CLK3-211ENST00000563297 GNB1LQ9BYB4 327 aa9.26□□□□□ -0.93
CLK3-211ENST00000563297 PMVKQ15126 192 aa9.25□□□□□ -0.93
CLK3-211ENST00000563297 ANAPC11Q9NYG5 84 aa9.25□□□□□ -0.93
CLK3-211ENST00000563297 KRTAP13-1Q8IUC0 172 aa9.24□□□□□ -0.93
CLK3-211ENST00000563297 CBLN2Q8IUK8 224 aa9.23□□□□□ -0.93
CLK3-211ENST00000563297 MRPL18Q9H0U6 180 aaKnown RBP9.23□□□□□ -0.93
CLK3-211ENST00000563297 KRTAP13-2Q52LG2 175 aa9.22□□□□□ -0.93
CLK3-211ENST00000563297 NKAPP1Q8N9T2 125 aa9.22□□□□□ -0.93
CLK3-211ENST00000563297 UBE2AP49459 152 aa9.21□□□□□ -0.94
CLK3-211ENST00000563297 FA2HQ7L5A8 372 aa9.21□□□□□ -0.94
CLK3-211ENST00000563297 H3BRM9 83 aa9.2□□□□□ -0.94
CLK3-211ENST00000563297 ATP5LO75964 103 aa9.2□□□□□ -0.94
CLK3-211ENST00000563297 IGKV2-28A0A075B6P5 120 aa9.19□□□□□ -0.94
CLK3-211ENST00000563297 IGLV5-39A0A0G2JS06 123 aa9.19□□□□□ -0.94
CLK3-211ENST00000563297 IGKV2D-28P01615 120 aa9.19□□□□□ -0.94
CLK3-211ENST00000563297 PFN2P35080 140 aa9.19□□□□□ -0.94
CLK3-211ENST00000563297 FABP9Q0Z7S8 132 aa9.19□□□□□ -0.94
CLK3-211ENST00000563297 COX19Q49B96 90 aa9.19□□□□□ -0.94
CLK3-211ENST00000563297 IGLC3P0DOY3 106 aa9.18□□□□□ -0.94
CLK3-211ENST00000563297 FAM229BQ4G0N7 80 aa9.18□□□□□ -0.94
CLK3-211ENST00000563297 A0A096LNJ9 63 aa9.17□□□□□ -0.94
CLK3-211ENST00000563297 COLCA2A8K830 154 aa9.17□□□□□ -0.94
CLK3-211ENST00000563297 VPREB1P12018 145 aa9.17□□□□□ -0.94
CLK3-211ENST00000563297 ZNF22P17026 224 aaPredicted RBP9.16□□□□□ -0.94
CLK3-211ENST00000563297 NDUFA6P56556 154 aa9.16□□□□□ -0.94
CLK3-211ENST00000563297 SND1-IT1Q9HBX3 110 aa9.16□□□□□ -0.94
CLK3-211ENST00000563297 ERG28Q9UKR5 140 aa9.16□□□□□ -0.94
CLK3-211ENST00000563297 URB1-AS1Q96HZ7 61 aa9.15□□□□□ -0.94
CLK3-211ENST00000563297 TMEM238C9JI98 176 aa9.14□□□□□ -0.95
CLK3-211ENST00000563297 PRLHP81277 87 aa9.14□□□□□ -0.95
CLK3-211ENST00000563297 COX17Q14061 63 aa9.14□□□□□ -0.95
CLK3-211ENST00000563297 LINC00304Q8N9R0 145 aa9.14□□□□□ -0.95
CLK3-211ENST00000563297 YPEL4Q96NS1 127 aa9.14□□□□□ -0.95
CLK3-211ENST00000563297 RETNLBQ9BQ08 111 aa9.14□□□□□ -0.95
CLK3-211ENST00000563297 TMEM126AQ9H061 195 aa9.14□□□□□ -0.95
CLK3-211ENST00000563297 LINC00614P0C842 121 aa9.13□□□□□ -0.95
CLK3-211ENST00000563297 RPL24P83731 157 aaKnown RBP9.13□□□□□ -0.95
CLK3-211ENST00000563297 FAM19A1Q7Z5A9 133 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms