RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 TMEM238C9JI98 176 aa14.25□□□□□ -0.13
CLN3-209ENST00000561689 PRSS2P07478 247 aa14.25□□□□□ -0.13
CLN3-209ENST00000561689 KRTAP26-1Q6PEX3 210 aa14.25□□□□□ -0.13
CLN3-209ENST00000561689 A0A1B0GWB2 263 aa14.25□□□□□ -0.13
CLN3-209ENST00000561689 IGKV2D-24A0A075B6R9 120 aa14.24□□□□□ -0.13
CLN3-209ENST00000561689 Q8IZM0 81 aa14.24□□□□□ -0.13
CLN3-209ENST00000561689 C1orf43Q9BWL3 253 aa14.24□□□□□ -0.13
CLN3-209ENST00000561689 SPCS1Q9Y6A9 102 aa14.24□□□□□ -0.13
CLN3-209ENST00000561689 PLECQ15149 4684 aaKnown RBP14.24□□□□□ -0.13
CLN3-209ENST00000561689 A0A0U1RRA0 63 aa14.23□□□□□ -0.13
CLN3-209ENST00000561689 IBA57-AS1B1ANH7 110 aa14.23□□□□□ -0.13
CLN3-209ENST00000561689 FABP2P12104 132 aa14.23□□□□□ -0.13
CLN3-209ENST00000561689 HERV-K104P63124 156 aa14.23□□□□□ -0.13
CLN3-209ENST00000561689 C2orf82Q6UX34 121 aa14.23□□□□□ -0.13
CLN3-209ENST00000561689 GTF2H5Q6ZYL4 71 aa14.23□□□□□ -0.13
CLN3-209ENST00000561689 KIAA0087Q14695 138 aa14.22□□□□□ -0.13
CLN3-209ENST00000561689 MEIG1Q5JSS6 88 aa14.22□□□□□ -0.13
CLN3-209ENST00000561689 DAND5Q8N907 189 aa14.22□□□□□ -0.13
CLN3-209ENST00000561689 STARD9Q9P2P6 4700 aa14.22□□□□□ -0.13
CLN3-209ENST00000561689 TGP01266 2768 aa14.21□□□□□ -0.13
CLN3-209ENST00000561689 APOMO95445 188 aa14.21□□□□□ -0.13
CLN3-209ENST00000561689 CIRBPQ14011 172 aaKnown RBP14.21□□□□□ -0.13
CLN3-209ENST00000561689 TIMM17BO60830 172 aa14.2□□□□□ -0.14
CLN3-209ENST00000561689 CKS1BP61024 79 aa14.2□□□□□ -0.14
CLN3-209ENST00000561689 CFAP161Q6P656 301 aa14.2□□□□□ -0.14
CLN3-209ENST00000561689 MUSTN1Q8IVN3 82 aa14.2□□□□□ -0.14
CLN3-209ENST00000561689 LINC00526Q96FQ7 95 aa14.2□□□□□ -0.14
CLN3-209ENST00000561689 NPC2P61916 151 aa14.19□□□□□ -0.14
CLN3-209ENST00000561689 SPAG11BQ08648 103 aa14.18□□□□□ -0.14
CLN3-209ENST00000561689 SPANXDQ9BXN6 97 aa14.18□□□□□ -0.14
CLN3-209ENST00000561689 SPANXCQ9NY87 97 aa14.18□□□□□ -0.14
CLN3-209ENST00000561689 C6orf223Q8N319 242 aa14.18□□□□□ -0.14
CLN3-209ENST00000561689 KRTAP1-5Q9BYS1 174 aa14.16□□□□□ -0.14
CLN3-209ENST00000561689 TMEM238LA0A1B0GVL6 79 aa14.16□□□□□ -0.14
CLN3-209ENST00000561689 A6NJY4 79 aa14.16□□□□□ -0.14
CLN3-209ENST00000561689 SFTA2Q6UW10 78 aa14.16□□□□□ -0.14
CLN3-209ENST00000561689 EIF4EBP3O60516 100 aaPredicted RBP14.15□□□□□ -0.14
CLN3-209ENST00000561689 DNAH1Q9P2D7 4330 aa14.15□□□□□ -0.14
CLN3-209ENST00000561689 PFN2P35080 140 aa14.14□□□□□ -0.15
CLN3-209ENST00000561689 HIGD2BQ4VC39 106 aa14.14□□□□□ -0.15
CLN3-209ENST00000561689 PGPEP1Q9NXJ5 209 aa14.14□□□□□ -0.15
CLN3-209ENST00000561689 MUC7Q8TAX7 377 aa14.14□□□□□ -0.15
CLN3-209ENST00000561689 A4D1N5 150 aa14.13□□□□□ -0.15
CLN3-209ENST00000561689 CXCL5P42830 114 aa14.13□□□□□ -0.15
CLN3-209ENST00000561689 LINC00158P58513 81 aa14.13□□□□□ -0.15
CLN3-209ENST00000561689 CFC1BP0CG36 223 aa14.13□□□□□ -0.15
CLN3-209ENST00000561689 CFC1P0CG37 223 aa14.13□□□□□ -0.15
CLN3-209ENST00000561689 RPL24P83731 157 aaKnown RBP14.13□□□□□ -0.15
CLN3-209ENST00000561689 C15orf56Q8N910 161 aa14.13□□□□□ -0.15
CLN3-209ENST00000561689 ERG28Q9UKR5 140 aa14.13□□□□□ -0.15
CLN3-209ENST00000561689 CASC10Q5T4H9 136 aa14.12□□□□□ -0.15
CLN3-209ENST00000561689 C10orf25Q5T742 122 aa14.12□□□□□ -0.15
CLN3-209ENST00000561689 UNQ6190/PRO20217Q6UXQ8 127 aa14.12□□□□□ -0.15
CLN3-209ENST00000561689 TSPAN13O95857 204 aa14.11□□□□□ -0.15
CLN3-209ENST00000561689 LINC00308Q8TCZ7 52 aa14.11□□□□□ -0.15
CLN3-209ENST00000561689 MIR7-3HGQ8N6C7 128 aa14.11□□□□□ -0.15
CLN3-209ENST00000561689 RMI2Q96E14 147 aa14.11□□□□□ -0.15
CLN3-209ENST00000561689 ZNF561-AS1K7EIQ3 104 aa14.1□□□□□ -0.15
CLN3-209ENST00000561689 C9orf116Q5BN46 136 aaPredicted RBP14.1□□□□□ -0.15
CLN3-209ENST00000561689 IFITM1P13164 125 aa14.09□□□□□ -0.15
CLN3-209ENST00000561689 SOSTDC1Q6X4U4 206 aa14.09□□□□□ -0.15
CLN3-209ENST00000561689 NTN5Q8WTR8 489 aaPredicted RBP14.09□□□□□ -0.15
CLN3-209ENST00000561689 OCIAD2Q56VL3 154 aa14.07□□□□□ -0.16
CLN3-209ENST00000561689 WWC2-AS2Q96NR7 200 aa14.07□□□□□ -0.16
CLN3-209ENST00000561689 H3BMG7 143 aa14.06□□□□□ -0.16
CLN3-209ENST00000561689 CBY1Q9Y3M2 126 aa14.06□□□□□ -0.16
CLN3-209ENST00000561689 CAMK2N2Q96S95 79 aa14.05□□□□□ -0.16
CLN3-209ENST00000561689 GVQW2A0A096LPI5 108 aaPredicted RBP14.04□□□□□ -0.16
CLN3-209ENST00000561689 NBDYA0A0U1RRE5 68 aa14.04□□□□□ -0.16
CLN3-209ENST00000561689 USP17L23D6RBM5 183 aa14.03□□□□□ -0.16
CLN3-209ENST00000561689 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.03□□□□□ -0.16
CLN3-209ENST00000561689 LECT2O14960 151 aa14.03□□□□□ -0.16
CLN3-209ENST00000561689 COPS9Q8WXC6 57 aa14.03□□□□□ -0.16
CLN3-209ENST00000561689 C6orf48Q9UBA6 75 aa14.03□□□□□ -0.16
CLN3-209ENST00000561689 PRO1854Q9UHT4 67 aa14.03□□□□□ -0.16
CLN3-209ENST00000561689 VPS13DQ5THJ4 4388 aa14.02□□□□□ -0.16
CLN3-209ENST00000561689 COX17Q14061 63 aa14.02□□□□□ -0.17
CLN3-209ENST00000561689 MTURNQ8N3F0 131 aa14.02□□□□□ -0.17
CLN3-209ENST00000561689 LOC107984156A0A0G2JMH3 177 aa14.01□□□□□ -0.17
CLN3-209ENST00000561689 TTC32Q5I0X7 151 aa14.01□□□□□ -0.17
CLN3-209ENST00000561689 Q6ZRU5 148 aa14.01□□□□□ -0.17
CLN3-209ENST00000561689 ARL17AQ8IVW1 177 aa14.01□□□□□ -0.17
CLN3-209ENST00000561689 C2orf48Q96LS8 159 aa14□□□□□ -0.17
CLN3-209ENST00000561689 A0A0B4J2C4 111 aa14□□□□□ -0.17
CLN3-209ENST00000561689 DNAH10Q8IVF4 4471 aa13.99□□□□□ -0.17
CLN3-209ENST00000561689 M0R2N4 97 aa13.99□□□□□ -0.17
CLN3-209ENST00000561689 WFDC2Q14508 124 aa13.99□□□□□ -0.17
CLN3-209ENST00000561689 RNF151Q2KHN1 245 aa13.98□□□□□ -0.17
CLN3-209ENST00000561689 PRO0461Q9UI25 63 aa13.98□□□□□ -0.17
CLN3-209ENST00000561689 PSCAO43653 123 aa13.98□□□□□ -0.17
CLN3-209ENST00000561689 SND1-IT1Q9HBX3 110 aa13.97□□□□□ -0.17
CLN3-209ENST00000561689 TRBV30A0A0K0K1B3 111 aa13.96□□□□□ -0.17
CLN3-209ENST00000561689 H7C2G1 150 aa13.96□□□□□ -0.17
CLN3-209ENST00000561689 PSMB2P49721 201 aa13.96□□□□□ -0.17
CLN3-209ENST00000561689 SYCNQ0VAF6 134 aa13.96□□□□□ -0.18
CLN3-209ENST00000561689 PPDPFQ9H3Y8 114 aa13.96□□□□□ -0.18
CLN3-209ENST00000561689 F8W1H4 67 aa13.95□□□□□ -0.18
CLN3-209ENST00000561689 SLPIP03973 132 aa13.94□□□□□ -0.18
CLN3-209ENST00000561689 TCL1BO95988 128 aa13.94□□□□□ -0.18
CLN3-209ENST00000561689 K7ERU9 68 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms