RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 A0A096LPF7 62 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 IGKV2-29A2NJV5 120 aaPredicted RBP3.49□□□□□ -1.85
LDLR-209ENST00000558528 NUPR2A6NF83 97 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 H3BRM9 83 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 M0QXV9 152 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 CCL18P55774 89 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 RPL39P62891 51 aaKnown RBP3.49□□□□□ -1.85
LDLR-209ENST00000558528 HERVK_113P63121 156 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 LYPD5Q6UWN5 251 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 NTM-AS1Q6ZSK4 140 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 BOD1L2Q8IYS8 172 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 CDC42SE2Q9NRR3 84 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 SPANXB1Q9NS25 103 aaPredicted RBP3.49□□□□□ -1.85
LDLR-209ENST00000558528 SORL1Q92673 2214 aa3.49□□□□□ -1.85
LDLR-209ENST00000558528 IGKV2D-30A0A075B6S6 120 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 TINCRA0A1B0GVN0 87 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 C11orf86A6NJI1 115 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 CXCL6P80162 114 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 SS18Q15532 418 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 SPATA45Q537H7 98 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 LINC00173Q6ZV60 143 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 FAM19A3Q7Z5A8 133 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 MRPL35Q9NZE8 188 aaKnown RBP3.48□□□□□ -1.85
LDLR-209ENST00000558528 PKHD1P08F94 4074 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 AGRNO00468 2067 aa3.48□□□□□ -1.85
LDLR-209ENST00000558528 TRAV8-4A0A0B4J246 113 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 IGHV3OR16-9A0A0B4J2B5 98 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 IGLL5B9A064 214 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 IGLC3P0DOY3 106 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 KIAA0087Q14695 138 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 TMEM170BQ5T4T1 132 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 ZC2HC1BQ5TFG8 222 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 CEMP1Q6PRD7 247 aaPredicted RBP3.47□□□□□ -1.85
LDLR-209ENST00000558528 SFTA2Q6UW10 78 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 Q8N377 158 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 C10orf126Q8N4M7 172 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 Q8N976 141 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 PLEKHB2Q96CS7 222 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 UQCR10Q9UDW1 63 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 DNAH11Q96DT5 4516 aa3.47□□□□□ -1.85
LDLR-209ENST00000558528 MUC4Q99102 2169 aa3.46□□□□□ -1.85
LDLR-209ENST00000558528 LINC00587B1AMM8 73 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 DLEU1O43261 78 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 CRPP02741 224 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 UBE2D1P51668 147 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 RBX1P62877 108 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 PRR3P79522 188 aaKnown RBP3.46□□□□□ -1.86
LDLR-209ENST00000558528 CD164Q04900 197 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 SLC25A34Q6PIV7 304 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 DEFB104AQ8WTQ1 72 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 RMI2Q96E14 147 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 MIEN1Q9BRT3 115 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 CHAC1Q9BUX1 264 aa3.46□□□□□ -1.86
LDLR-209ENST00000558528 MRPS16Q9Y3D3 137 aaKnown RBP3.46□□□□□ -1.86
LDLR-209ENST00000558528 HSPG2P98160 4391 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 TRAV13-1A0A0B4J241 112 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 A0A0J9YXV3 536 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 NDUFAF8A1L188 74 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 LEPROTO15243 131 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 APOMO95445 188 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 ANGP03950 147 aaKnown RBP3.45□□□□□ -1.86
LDLR-209ENST00000558528 COX8AP10176 69 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 LGALS3P17931 250 aaKnown RBP3.45□□□□□ -1.86
LDLR-209ENST00000558528 NMUP48645 174 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 MIAQ16674 131 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 ESRGQ1W209 222 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 LINC01556Q5JQF7 62 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 Q6ZUT4 128 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 FAM19A1Q7Z5A9 133 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 ATOH7Q8N100 152 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 UPK3BQ9BT76 320 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 KMT2AQ03164 3969 aa3.45□□□□□ -1.86
LDLR-209ENST00000558528 IGLV4-69A0A075B6H9 119 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 IGLV4-60A0A075B6I1 120 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 TRAV8-3A0A0A6YYJ7 113 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 IGHV1-58A0A0C4DH39 117 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 LINC00959A0A1B0GUT2 108 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 FAM240AA0A1B0GVK7 77 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 TMEM223A0PJW6 202 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 DNAH10OSP0CZ25 163 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 REG3AQ06141 175 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 CIRBPQ14011 172 aaKnown RBP3.44□□□□□ -1.86
LDLR-209ENST00000558528 MPV17L2Q567V2 206 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 UBE2DNLQ8IWF7 75 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 LINC00269Q8N2A0 174 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 COPS9Q8WXC6 57 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 KRTAP4-5Q9BYR2 181 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 PRR34Q9NV39 138 aa3.44□□□□□ -1.86
LDLR-209ENST00000558528 MYMXA0A1B0GTQ4 84 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 CHTF8P0CG12 524 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 ZNF22P17026 224 aaPredicted RBP3.43□□□□□ -1.86
LDLR-209ENST00000558528 DDTP30046 118 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 CXCL5P42830 114 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 TTC32Q5I0X7 151 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 Q8N9P0 234 aaPredicted RBP3.43□□□□□ -1.86
LDLR-209ENST00000558528 FAM104AQ969W3 186 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 HIGD1BQ9P298 99 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 KLK12Q9UKR0 248 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 APLNQ9ULZ1 77 aa3.43□□□□□ -1.86
LDLR-209ENST00000558528 DMBT1Q9UGM3 2413 aaPredicted RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms