RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 Q9HAA7 133 aa8.34□□□□□ -1.07
SHMT2-214ENST00000554604 A0A087WTM6 91 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 IGLV5-39A0A0G2JS06 123 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 A0A0J9YXY3 114 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 IBA57-AS1B1ANH7 110 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 TMEM238C9JI98 176 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 SPINK8P0C7L1 97 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 COX6A2Q02221 97 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 RAB37Q96AX2 223 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 KRTAP17-1Q9BYP8 105 aa8.33□□□□□ -1.08
SHMT2-214ENST00000554604 TRAV13-1A0A0B4J241 112 aa8.32□□□□□ -1.08
SHMT2-214ENST00000554604 H3BUT2 72 aa8.32□□□□□ -1.08
SHMT2-214ENST00000554604 FUSP35637 526 aaKnown RBP eCLIP8.32□□□□□ -1.08
SHMT2-214ENST00000554604 NDUFA12Q9UI09 145 aa8.32□□□□□ -1.08
SHMT2-214ENST00000554604 LRP1BQ9NZR2 4599 aa8.31□□□□□ -1.08
SHMT2-214ENST00000554604 A0A1B0GUV1 79 aa8.31□□□□□ -1.08
SHMT2-214ENST00000554604 A0A1W2PPM0 123 aa8.31□□□□□ -1.08
SHMT2-214ENST00000554604 K7ERJ3 54 aa8.31□□□□□ -1.08
SHMT2-214ENST00000554604 NDUFA1O15239 70 aa8.31□□□□□ -1.08
SHMT2-214ENST00000554604 CCL25O15444 150 aa8.31□□□□□ -1.08
SHMT2-214ENST00000554604 TIMM17BO60830 172 aa8.31□□□□□ -1.08
SHMT2-214ENST00000554604 IGLV4-60A0A075B6I1 120 aa8.3□□□□□ -1.08
SHMT2-214ENST00000554604 SMIM1B2RUZ4 78 aa8.3□□□□□ -1.08
SHMT2-214ENST00000554604 GTF2H5Q6ZYL4 71 aa8.3□□□□□ -1.08
SHMT2-214ENST00000554604 PCLOQ9Y6V0 5065 aa8.29□□□□□ -1.08
SHMT2-214ENST00000554604 LITAFQ99732 161 aa8.29□□□□□ -1.08
SHMT2-214ENST00000554604 SPANXDQ9BXN6 97 aa8.29□□□□□ -1.08
SHMT2-214ENST00000554604 SPANXCQ9NY87 97 aa8.29□□□□□ -1.08
SHMT2-214ENST00000554604 GAGE10A6NGK3 116 aa8.28□□□□□ -1.08
SHMT2-214ENST00000554604 K7EP34 96 aa8.28□□□□□ -1.08
SHMT2-214ENST00000554604 FABP2P12104 132 aa8.28□□□□□ -1.08
SHMT2-214ENST00000554604 Q8N3U1 123 aa8.28□□□□□ -1.08
SHMT2-214ENST00000554604 DNAH5Q8TE73 4624 aa8.27□□□□□ -1.09
SHMT2-214ENST00000554604 RBX1P62877 108 aa8.27□□□□□ -1.09
SHMT2-214ENST00000554604 RPL24P83731 157 aaKnown RBP8.27□□□□□ -1.09
SHMT2-214ENST00000554604 NAA38Q9BRA0 125 aaKnown RBP8.27□□□□□ -1.09
SHMT2-214ENST00000554604 RYR1P21817 5038 aa8.27□□□□□ -1.09
SHMT2-214ENST00000554604 IGHV3OR16-9A0A0B4J2B5 98 aa8.26□□□□□ -1.09
SHMT2-214ENST00000554604 LINC00959A0A1B0GUT2 108 aa8.26□□□□□ -1.09
SHMT2-214ENST00000554604 MUSTN1Q8IVN3 82 aa8.26□□□□□ -1.09
SHMT2-214ENST00000554604 KRTAP4-5Q9BYR2 181 aa8.26□□□□□ -1.09
SHMT2-214ENST00000554604 SPCS1Q9Y6A9 102 aa8.26□□□□□ -1.09
SHMT2-214ENST00000554604 IGLV5-52A0A0A0MRZ9 124 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.25□□□□□ -1.09
SHMT2-214ENST00000554604 A0A0B4J2C4 111 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 LRCOL1A6NCL2 159 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 TMEM262E9PQX1 116 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 IFITM1P13164 125 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 HERV-K104P63124 156 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 SS18Q15532 418 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 MIAQ16674 131 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 LINC01561Q8N1V8 128 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 Q8N1X5 172 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 NTN5Q8WTR8 489 aaPredicted RBP8.25□□□□□ -1.09
SHMT2-214ENST00000554604 HSPG2P98160 4391 aa8.25□□□□□ -1.09
SHMT2-214ENST00000554604 A0A087WZ39 114 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 A4D1N5 150 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 APOMO95445 188 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 CFC1BP0CG36 223 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 CFC1P0CG37 223 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 KRTAP10-1P60331 282 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 CIRBPQ14011 172 aaKnown RBP8.24□□□□□ -1.09
SHMT2-214ENST00000554604 Q8N814 137 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 RMI2Q96E14 147 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 ZNF625Q96I27 306 aaPredicted RBP8.24□□□□□ -1.09
SHMT2-214ENST00000554604 KLK12Q9UKR0 248 aa8.24□□□□□ -1.09
SHMT2-214ENST00000554604 ADAMTSL4-AS1Q5T5F5 129 aa8.23□□□□□ -1.09
SHMT2-214ENST00000554604 COX7B2Q8TF08 81 aa8.23□□□□□ -1.09
SHMT2-214ENST00000554604 PPDPFQ9H3Y8 114 aa8.23□□□□□ -1.09
SHMT2-214ENST00000554604 PRO1854Q9UHT4 67 aa8.23□□□□□ -1.09
SHMT2-214ENST00000554604 IGKV2D-24A0A075B6R9 120 aa8.22□□□□□ -1.09
SHMT2-214ENST00000554604 IGKV3OR2-268A0A0C4DH90 116 aa8.22□□□□□ -1.09
SHMT2-214ENST00000554604 TSPAN13O95857 204 aa8.22□□□□□ -1.09
SHMT2-214ENST00000554604 UBE2WQ96B02 151 aa8.22□□□□□ -1.09
SHMT2-214ENST00000554604 APOBP04114 4563 aaKnown RBP8.21□□□□□ -1.09
SHMT2-214ENST00000554604 LECT2O14960 151 aa8.21□□□□□ -1.1
SHMT2-214ENST00000554604 LYRM7Q5U5X0 104 aa8.21□□□□□ -1.1
SHMT2-214ENST00000554604 SFTA2Q6UW10 78 aa8.21□□□□□ -1.1
SHMT2-214ENST00000554604 COPS9Q8WXC6 57 aa8.21□□□□□ -1.1
SHMT2-214ENST00000554604 PRSS2P07478 247 aa8.2□□□□□ -1.1
SHMT2-214ENST00000554604 EPM2AB3EWF7 344 aa8.19□□□□□ -1.1
SHMT2-214ENST00000554604 EIF4EBP3O60516 100 aaPredicted RBP8.19□□□□□ -1.1
SHMT2-214ENST00000554604 CRPP02741 224 aa8.19□□□□□ -1.1
SHMT2-214ENST00000554604 ANGP03950 147 aaKnown RBP8.19□□□□□ -1.1
SHMT2-214ENST00000554604 XGP55808 180 aa8.19□□□□□ -1.1
SHMT2-214ENST00000554604 WFDC2Q14508 124 aa8.19□□□□□ -1.1
SHMT2-214ENST00000554604 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.18□□□□□ -1.1
SHMT2-214ENST00000554604 REG3AQ06141 175 aa8.18□□□□□ -1.1
SHMT2-214ENST00000554604 MEIG1Q5JSS6 88 aa8.18□□□□□ -1.1
SHMT2-214ENST00000554604 CD164L2Q6UWJ8 174 aa8.18□□□□□ -1.1
SHMT2-214ENST00000554604 C5orf38Q86SI9 138 aa8.18□□□□□ -1.1
SHMT2-214ENST00000554604 LINC00269Q8N2A0 174 aa8.18□□□□□ -1.1
SHMT2-214ENST00000554604 C1orf43Q9BWL3 253 aa8.18□□□□□ -1.1
SHMT2-214ENST00000554604 ERG28Q9UKR5 140 aa8.18□□□□□ -1.1
SHMT2-214ENST00000554604 XCL1P47992 114 aa8.17□□□□□ -1.1
SHMT2-214ENST00000554604 LINC00308Q8TCZ7 52 aa8.17□□□□□ -1.1
SHMT2-214ENST00000554604 ABCA13Q86UQ4 5058 aa8.17□□□□□ -1.1
SHMT2-214ENST00000554604 CLPSL2Q6UWE3 100 aa8.16□□□□□ -1.1
SHMT2-214ENST00000554604 Q8IZM0 81 aa8.16□□□□□ -1.1
SHMT2-214ENST00000554604 CHCHD10Q8WYQ3 142 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms