RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 SPACA4Q8TDM5 124 aa14.33□□□□□ -0.12
BRF1-216ENST00000550208 C6orf48Q9UBA6 75 aa14.33□□□□□ -0.12
BRF1-216ENST00000550208 CHTOPQ9Y3Y2 248 aaKnown RBP14.33□□□□□ -0.12
BRF1-216ENST00000550208 FAT1Q14517 4588 aa14.32□□□□□ -0.12
BRF1-216ENST00000550208 TRAV12-1A0A0B4J245 112 aa14.32□□□□□ -0.12
BRF1-216ENST00000550208 LOC107984640A0A0U1RRK4 108 aa14.32□□□□□ -0.12
BRF1-216ENST00000550208 FABP4P15090 132 aa14.32□□□□□ -0.12
BRF1-216ENST00000550208 ZNF22P17026 224 aaPredicted RBP14.32□□□□□ -0.12
BRF1-216ENST00000550208 MAJINQ3KP22 176 aa14.32□□□□□ -0.12
BRF1-216ENST00000550208 Q8IZM0 81 aa14.32□□□□□ -0.12
BRF1-216ENST00000550208 C11orf86A6NJI1 115 aa14.31□□□□□ -0.12
BRF1-216ENST00000550208 GAGE2BQ13066 116 aa14.31□□□□□ -0.12
BRF1-216ENST00000550208 A0A087WYN8 130 aa14.3□□□□□ -0.12
BRF1-216ENST00000550208 H3BRM9 83 aa14.3□□□□□ -0.12
BRF1-216ENST00000550208 PKIGQ9Y2B9 76 aa14.3□□□□□ -0.12
BRF1-216ENST00000550208 EPM2AB3EWF7 344 aa14.29□□□□□ -0.12
BRF1-216ENST00000550208 PTTG1IPP53801 180 aa14.28□□□□□ -0.12
BRF1-216ENST00000550208 CKS1BP61024 79 aa14.28□□□□□ -0.12
BRF1-216ENST00000550208 Q5VSD8 79 aa14.28□□□□□ -0.12
BRF1-216ENST00000550208 COX7B2Q8TF08 81 aa14.28□□□□□ -0.12
BRF1-216ENST00000550208 FAM229AH3BQW9 127 aa14.27□□□□□ -0.13
BRF1-216ENST00000550208 LINC00528Q8N1L1 170 aa14.27□□□□□ -0.13
BRF1-216ENST00000550208 HSPB8Q9UJY1 196 aa14.27□□□□□ -0.13
BRF1-216ENST00000550208 TRBV30A0A0K0K1B3 111 aa14.26□□□□□ -0.13
BRF1-216ENST00000550208 H0Y8G0 127 aa14.26□□□□□ -0.13
BRF1-216ENST00000550208 RPL18AQ02543 176 aaKnown RBP14.26□□□□□ -0.13
BRF1-216ENST00000550208 C9orf116Q5BN46 136 aaPredicted RBP14.26□□□□□ -0.13
BRF1-216ENST00000550208 TMEM170BQ5T4T1 132 aa14.26□□□□□ -0.13
BRF1-216ENST00000550208 PLAC8Q9NZF1 115 aa14.26□□□□□ -0.13
BRF1-216ENST00000550208 LINC00474Q9P2X8 69 aa14.26□□□□□ -0.13
BRF1-216ENST00000550208 F8VRH5 84 aa14.25□□□□□ -0.13
BRF1-216ENST00000550208 STPG4Q8N801 248 aa14.25□□□□□ -0.13
BRF1-216ENST00000550208 IGLV5-39A0A0G2JS06 123 aa14.24□□□□□ -0.13
BRF1-216ENST00000550208 TLX1NBP0CAT3 122 aa14.24□□□□□ -0.13
BRF1-216ENST00000550208 ODF1Q14990 250 aa14.23□□□□□ -0.13
BRF1-216ENST00000550208 Q6ZRP5 223 aa14.23□□□□□ -0.13
BRF1-216ENST00000550208 COA6Q5JTJ3 125 aaKnown RBP14.22□□□□□ -0.13
BRF1-216ENST00000550208 ABCA13Q86UQ4 5058 aa14.22□□□□□ -0.13
BRF1-216ENST00000550208 CXCL5P42830 114 aa14.21□□□□□ -0.13
BRF1-216ENST00000550208 A0A1W2PNN7 141 aa14.2□□□□□ -0.14
BRF1-216ENST00000550208 GAGE2EQ4V326 116 aa14.2□□□□□ -0.14
BRF1-216ENST00000550208 GAGE2DQ9UEU5 116 aa14.2□□□□□ -0.14
BRF1-216ENST00000550208 TMEM223A0PJW6 202 aa14.19□□□□□ -0.14
BRF1-216ENST00000550208 NDUFC2-KCTD14E9PQ53 114 aa14.18□□□□□ -0.14
BRF1-216ENST00000550208 MAP1LC3CQ9BXW4 147 aa14.18□□□□□ -0.14
BRF1-216ENST00000550208 VPS13BQ7Z7G8 4022 aa14.18□□□□□ -0.14
BRF1-216ENST00000550208 PMCHL2Q9BQD1 86 aa14.17□□□□□ -0.14
BRF1-216ENST00000550208 PLA2G1BP04054 148 aaKnown RBP14.16□□□□□ -0.14
BRF1-216ENST00000550208 KRTAP10-4P60372 401 aaPredicted RBP14.13□□□□□ -0.15
BRF1-216ENST00000550208 PCLOQ9Y6V0 5065 aa14.13□□□□□ -0.15
BRF1-216ENST00000550208 FAM168BA1KXE4 195 aa14.12□□□□□ -0.15
BRF1-216ENST00000550208 SYS1-DBNDD2H3BUS1 97 aa14.12□□□□□ -0.15
BRF1-216ENST00000550208 DPM2O94777 84 aa14.12□□□□□ -0.15
BRF1-216ENST00000550208 RPL37AP61513 92 aaKnown RBP14.12□□□□□ -0.15
BRF1-216ENST00000550208 C9orf129Q5T035 196 aaKnown RBP14.12□□□□□ -0.15
BRF1-216ENST00000550208 INAFM2P0DMQ5 153 aa14.11□□□□□ -0.15
BRF1-216ENST00000550208 PLNP26678 52 aa14.11□□□□□ -0.15
BRF1-216ENST00000550208 IGKCP01834 107 aa14.1□□□□□ -0.15
BRF1-216ENST00000550208 SRRM2Q9UQ35 2752 aaKnown RBP14.1□□□□□ -0.15
BRF1-216ENST00000550208 C7orf33Q8WU49 177 aa14.09□□□□□ -0.15
BRF1-216ENST00000550208 ZNF625Q96I27 306 aaPredicted RBP14.09□□□□□ -0.15
BRF1-216ENST00000550208 KRTAP7-1Q8IUC3 87 aa14.08□□□□□ -0.16
BRF1-216ENST00000550208 XAGE1AQ9HD64 81 aa14.08□□□□□ -0.16
BRF1-216ENST00000550208 C3orf79P0CE67 100 aa14.07□□□□□ -0.16
BRF1-216ENST00000550208 PET117Q6UWS5 81 aa14.07□□□□□ -0.16
BRF1-216ENST00000550208 PHF5AQ7RTV0 110 aaKnown RBP14.07□□□□□ -0.16
BRF1-216ENST00000550208 PFN2P35080 140 aa14.06□□□□□ -0.16
BRF1-216ENST00000550208 FAM19A5Q7Z5A7 132 aaPredicted RBP14.06□□□□□ -0.16
BRF1-216ENST00000550208 LINC01545Q5VT33 79 aa14.05□□□□□ -0.16
BRF1-216ENST00000550208 ERG28Q9UKR5 140 aa14.05□□□□□ -0.16
BRF1-216ENST00000550208 KRTDAPP60985 99 aa14.04□□□□□ -0.16
BRF1-216ENST00000550208 LEPROTO15243 131 aa14.03□□□□□ -0.16
BRF1-216ENST00000550208 SFTA2Q6UW10 78 aa14.03□□□□□ -0.16
BRF1-216ENST00000550208 HIST3H2BBQ8N257 126 aa14.03□□□□□ -0.16
BRF1-216ENST00000550208 TSPEAR-AS2P59090 65 aa14.02□□□□□ -0.17
BRF1-216ENST00000550208 HERVK_113P61574 105 aa14.02□□□□□ -0.17
BRF1-216ENST00000550208 SERTAD4-AS1Q5TG53 156 aa14.02□□□□□ -0.17
BRF1-216ENST00000550208 PLEKHB2Q96CS7 222 aa14.01□□□□□ -0.17
BRF1-216ENST00000550208 COX17Q14061 63 aa14□□□□□ -0.17
BRF1-216ENST00000550208 NDUFA12Q9UI09 145 aa14□□□□□ -0.17
BRF1-216ENST00000550208 S100A6P06703 90 aa13.99□□□□□ -0.17
BRF1-216ENST00000550208 HNRNPA3P51991 378 aaKnown RBP13.99□□□□□ -0.17
BRF1-216ENST00000550208 J3QQQ9 107 aa13.98□□□□□ -0.17
BRF1-216ENST00000550208 SNRPEP62304 92 aaKnown RBP13.98□□□□□ -0.17
BRF1-216ENST00000550208 A0A0U1RRA0 63 aa13.97□□□□□ -0.17
BRF1-216ENST00000550208 MYMXA0A1B0GTQ4 84 aa13.97□□□□□ -0.17
BRF1-216ENST00000550208 M0QXV9 152 aa13.97□□□□□ -0.17
BRF1-216ENST00000550208 LINC00158P58513 81 aa13.97□□□□□ -0.17
BRF1-216ENST00000550208 PRR3P79522 188 aaKnown RBP13.97□□□□□ -0.17
BRF1-216ENST00000550208 C22orf24Q9Y442 160 aa13.97□□□□□ -0.17
BRF1-216ENST00000550208 S100A2P29034 98 aa13.96□□□□□ -0.17
BRF1-216ENST00000550208 HERV-K104P63124 156 aa13.96□□□□□ -0.17
BRF1-216ENST00000550208 KRTAP11-1Q8IUC1 163 aa13.96□□□□□ -0.17
BRF1-216ENST00000550208 HIST1H2BLQ99880 126 aa13.96□□□□□ -0.17
BRF1-216ENST00000550208 SND1-IT1Q9HBX3 110 aa13.96□□□□□ -0.17
BRF1-216ENST00000550208 SMIM13P0DJ93 91 aa13.95□□□□□ -0.18
BRF1-216ENST00000550208 C5orf52A6NGY3 159 aa13.94□□□□□ -0.18
BRF1-216ENST00000550208 E9PLD3 99 aa13.94□□□□□ -0.18
BRF1-216ENST00000550208 LGALS3P17931 250 aaKnown RBP13.94□□□□□ -0.18
BRF1-216ENST00000550208 MEIG1Q5JSS6 88 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms