RNA–Protein interactions for RNA: ENST00000546215.5

SCARB1-211, Transcript of scavenger receptor class B member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARB1, Length 1,597 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-211ENST00000546215 PANO1I0J062 215 aa13.29□□□□□ -0.28
SCARB1-211ENST00000546215 HAMPP81172 84 aa13.29□□□□□ -0.28
SCARB1-211ENST00000546215 IGLV5-39A0A0G2JS06 123 aa13.28□□□□□ -0.28
SCARB1-211ENST00000546215 C6orf48Q9UBA6 75 aa13.28□□□□□ -0.28
SCARB1-211ENST00000546215 COX7B2Q8TF08 81 aa13.28□□□□□ -0.28
SCARB1-211ENST00000546215 CHTF8P0CG12 524 aa13.27□□□□□ -0.29
SCARB1-211ENST00000546215 CKS1BP61024 79 aa13.27□□□□□ -0.29
SCARB1-211ENST00000546215 CIRBPQ14011 172 aaKnown RBP13.27□□□□□ -0.29
SCARB1-211ENST00000546215 A0A096LNI7 61 aa13.25□□□□□ -0.29
SCARB1-211ENST00000546215 TRBV30A0A0K0K1B3 111 aa13.25□□□□□ -0.29
SCARB1-211ENST00000546215 SYS1-DBNDD2H3BUS1 97 aa13.25□□□□□ -0.29
SCARB1-211ENST00000546215 SCXQ7RTU7 201 aa13.25□□□□□ -0.29
SCARB1-211ENST00000546215 PKIGQ9Y2B9 76 aa13.25□□□□□ -0.29
SCARB1-211ENST00000546215 LOC107984640A0A0U1RRK4 108 aa13.24□□□□□ -0.29
SCARB1-211ENST00000546215 TMEM223A0PJW6 202 aa13.24□□□□□ -0.29
SCARB1-211ENST00000546215 CXCL5P42830 114 aa13.24□□□□□ -0.29
SCARB1-211ENST00000546215 PMCHL2Q9BQD1 86 aa13.24□□□□□ -0.29
SCARB1-211ENST00000546215 FAT1Q14517 4588 aa13.24□□□□□ -0.29
SCARB1-211ENST00000546215 PLNP26678 52 aa13.24□□□□□ -0.29
SCARB1-211ENST00000546215 CIRBP-AS1Q8TBR5 109 aa13.24□□□□□ -0.29
SCARB1-211ENST00000546215 SPACA4Q8TDM5 124 aa13.24□□□□□ -0.29
SCARB1-211ENST00000546215 IGKV2-24A0A0C4DH68 120 aa13.23□□□□□ -0.29
SCARB1-211ENST00000546215 DPM2O94777 84 aa13.22□□□□□ -0.29
SCARB1-211ENST00000546215 S100A6P06703 90 aa13.22□□□□□ -0.29
SCARB1-211ENST00000546215 TLX1NBP0CAT3 122 aa13.22□□□□□ -0.29
SCARB1-211ENST00000546215 C3orf79P0CE67 100 aa13.22□□□□□ -0.29
SCARB1-211ENST00000546215 C9orf116Q5BN46 136 aaPredicted RBP13.22□□□□□ -0.29
SCARB1-211ENST00000546215 HIST3H2BBQ8N257 126 aa13.22□□□□□ -0.29
SCARB1-211ENST00000546215 KRTAP17-1Q9BYP8 105 aa13.22□□□□□ -0.29
SCARB1-211ENST00000546215 PTTG1IPP53801 180 aa13.21□□□□□ -0.29
SCARB1-211ENST00000546215 IGKCP01834 107 aa13.2□□□□□ -0.3
SCARB1-211ENST00000546215 PET117Q6UWS5 81 aa13.2□□□□□ -0.3
SCARB1-211ENST00000546215 RPL18AQ02543 176 aaKnown RBP13.2□□□□□ -0.3
SCARB1-211ENST00000546215 GAGE2BQ13066 116 aa13.2□□□□□ -0.3
SCARB1-211ENST00000546215 MAJINQ3KP22 176 aa13.2□□□□□ -0.3
SCARB1-211ENST00000546215 LINC01545Q5VT33 79 aa13.2□□□□□ -0.3
SCARB1-211ENST00000546215 LINC00474Q9P2X8 69 aa13.2□□□□□ -0.3
SCARB1-211ENST00000546215 A0A087WYN8 130 aa13.19□□□□□ -0.3
SCARB1-211ENST00000546215 Q6ZRP5 223 aa13.19□□□□□ -0.3
SCARB1-211ENST00000546215 DPH3Q96FX2 82 aa13.19□□□□□ -0.3
SCARB1-211ENST00000546215 SMR3BP02814 79 aaPredicted RBP13.18□□□□□ -0.3
SCARB1-211ENST00000546215 KRTDAPP60985 99 aa13.18□□□□□ -0.3
SCARB1-211ENST00000546215 HIST1H2BLQ99880 126 aa13.17□□□□□ -0.3
SCARB1-211ENST00000546215 NDUFC2-KCTD14E9PQ53 114 aa13.16□□□□□ -0.3
SCARB1-211ENST00000546215 S100A2P29034 98 aa13.16□□□□□ -0.3
SCARB1-211ENST00000546215 SNRPEP62304 92 aaKnown RBP13.16□□□□□ -0.3
SCARB1-211ENST00000546215 PLAC8Q9NZF1 115 aa13.15□□□□□ -0.3
SCARB1-211ENST00000546215 Q8N1X5 172 aa13.15□□□□□ -0.3
SCARB1-211ENST00000546215 STPG4Q8N801 248 aa13.15□□□□□ -0.3
SCARB1-211ENST00000546215 C5orf52A6NGY3 159 aa13.14□□□□□ -0.31
SCARB1-211ENST00000546215 ZNF625Q96I27 306 aaPredicted RBP13.14□□□□□ -0.31
SCARB1-211ENST00000546215 VPS13BQ7Z7G8 4022 aa13.13□□□□□ -0.31
SCARB1-211ENST00000546215 GAGE2EQ4V326 116 aa13.13□□□□□ -0.31
SCARB1-211ENST00000546215 GAGE2DQ9UEU5 116 aa13.13□□□□□ -0.31
SCARB1-211ENST00000546215 SFTA2Q6UW10 78 aa13.12□□□□□ -0.31
SCARB1-211ENST00000546215 EPM2AB3EWF7 344 aa13.11□□□□□ -0.31
SCARB1-211ENST00000546215 LEPROTO15243 131 aa13.11□□□□□ -0.31
SCARB1-211ENST00000546215 HERVK_113P61574 105 aa13.11□□□□□ -0.31
SCARB1-211ENST00000546215 A0A1W2PNN7 141 aa13.1□□□□□ -0.31
SCARB1-211ENST00000546215 TSPEAR-AS2P59090 65 aa13.1□□□□□ -0.31
SCARB1-211ENST00000546215 PLEKHB2Q96CS7 222 aa13.09□□□□□ -0.31
SCARB1-211ENST00000546215 C9orf129Q5T035 196 aaKnown RBP13.08□□□□□ -0.32
SCARB1-211ENST00000546215 LINC00528Q8N1L1 170 aa13.08□□□□□ -0.32
SCARB1-211ENST00000546215 C20orf202A1L168 122 aa13.07□□□□□ -0.32
SCARB1-211ENST00000546215 ERG28Q9UKR5 140 aa13.07□□□□□ -0.32
SCARB1-211ENST00000546215 E9PLD3 99 aa13.07□□□□□ -0.32
SCARB1-211ENST00000546215 J3QQQ9 107 aa13.07□□□□□ -0.32
SCARB1-211ENST00000546215 KRTAP4-5Q9BYR2 181 aa13.07□□□□□ -0.32
SCARB1-211ENST00000546215 NDUFA12Q9UI09 145 aa13.07□□□□□ -0.32
SCARB1-211ENST00000546215 FAM168BA1KXE4 195 aa13.06□□□□□ -0.32
SCARB1-211ENST00000546215 PFN2P35080 140 aa13.06□□□□□ -0.32
SCARB1-211ENST00000546215 COX17Q14061 63 aa13.06□□□□□ -0.32
SCARB1-211ENST00000546215 Q5VSD8 79 aa13.06□□□□□ -0.32
SCARB1-211ENST00000546215 FAM229AH3BQW9 127 aa13.05□□□□□ -0.32
SCARB1-211ENST00000546215 XAGE1AQ9HD64 81 aa13.05□□□□□ -0.32
SCARB1-211ENST00000546215 MYMXA0A1B0GTQ4 84 aa13.03□□□□□ -0.32
SCARB1-211ENST00000546215 HERV-K104P63124 156 aa13.03□□□□□ -0.32
SCARB1-211ENST00000546215 KRTAP7-1Q8IUC3 87 aa13.03□□□□□ -0.32
SCARB1-211ENST00000546215 SRRM2Q9UQ35 2752 aaKnown RBP13.03□□□□□ -0.32
SCARB1-211ENST00000546215 LGALS3P17931 250 aaKnown RBP13.02□□□□□ -0.33
SCARB1-211ENST00000546215 AKR1D1P51857 326 aa13.02□□□□□ -0.33
SCARB1-211ENST00000546215 ATOH7Q8N100 152 aa13.02□□□□□ -0.33
SCARB1-211ENST00000546215 ABCA13Q86UQ4 5058 aa13.01□□□□□ -0.33
SCARB1-211ENST00000546215 NMUP48645 174 aa13.01□□□□□ -0.33
SCARB1-211ENST00000546215 FAM19A5Q7Z5A7 132 aaPredicted RBP13□□□□□ -0.33
SCARB1-211ENST00000546215 IGKV2D-26A0A0A0MRZ7 120 aa12.98□□□□□ -0.33
SCARB1-211ENST00000546215 SMIM13P0DJ93 91 aa12.98□□□□□ -0.33
SCARB1-211ENST00000546215 LINC00158P58513 81 aa12.98□□□□□ -0.33
SCARB1-211ENST00000546215 SERTAD4-AS1Q5TG53 156 aa12.98□□□□□ -0.33
SCARB1-211ENST00000546215 C7orf33Q8WU49 177 aa12.98□□□□□ -0.33
SCARB1-211ENST00000546215 A0A0U1RRA0 63 aa12.98□□□□□ -0.33
SCARB1-211ENST00000546215 KRTAP10-4P60372 401 aaPredicted RBP12.98□□□□□ -0.33
SCARB1-211ENST00000546215 MEIG1Q5JSS6 88 aa12.98□□□□□ -0.33
SCARB1-211ENST00000546215 PHF5AQ7RTV0 110 aaKnown RBP12.98□□□□□ -0.33
SCARB1-211ENST00000546215 SND1-IT1Q9HBX3 110 aa12.98□□□□□ -0.33
SCARB1-211ENST00000546215 LINC00587B1AMM8 73 aa12.97□□□□□ -0.33
SCARB1-211ENST00000546215 PLA2G1BP04054 148 aaKnown RBP12.97□□□□□ -0.33
SCARB1-211ENST00000546215 TMA7Q9Y2S6 64 aaKnown RBP12.97□□□□□ -0.33
SCARB1-211ENST00000546215 ANKRD39Q53RE8 183 aa12.96□□□□□ -0.33
SCARB1-211ENST00000546215 RPL37AP61513 92 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms