RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 NDUFA12Q9UI09 145 aa10.51□□□□□ -0.73
PRPF40A-212ENST00000545856 DLEU1O43261 78 aa10.5□□□□□ -0.73
PRPF40A-212ENST00000545856 SPATA45Q537H7 98 aa10.5□□□□□ -0.73
PRPF40A-212ENST00000545856 ZNF625Q96I27 306 aaPredicted RBP10.5□□□□□ -0.73
PRPF40A-212ENST00000545856 CAMK2N2Q96S95 79 aa10.5□□□□□ -0.73
PRPF40A-212ENST00000545856 SYCNQ0VAF6 134 aa10.49□□□□□ -0.73
PRPF40A-212ENST00000545856 HIGD2BQ4VC39 106 aa10.49□□□□□ -0.73
PRPF40A-212ENST00000545856 PAM16Q9Y3D7 125 aa10.49□□□□□ -0.73
PRPF40A-212ENST00000545856 FAT2Q9NYQ8 4349 aa10.48□□□□□ -0.73
PRPF40A-212ENST00000545856 IGKV2D-26A0A0A0MRZ7 120 aa10.48□□□□□ -0.73
PRPF40A-212ENST00000545856 COX17Q14061 63 aa10.48□□□□□ -0.73
PRPF40A-212ENST00000545856 CDPF1Q6NVV7 123 aa10.48□□□□□ -0.73
PRPF40A-212ENST00000545856 COX8AP10176 69 aa10.47□□□□□ -0.73
PRPF40A-212ENST00000545856 GCSHP23434 173 aa10.47□□□□□ -0.73
PRPF40A-212ENST00000545856 WFDC2Q14508 124 aa10.47□□□□□ -0.73
PRPF40A-212ENST00000545856 MAJINQ3KP22 176 aa10.47□□□□□ -0.73
PRPF40A-212ENST00000545856 CARD19Q96LW7 228 aa10.47□□□□□ -0.73
PRPF40A-212ENST00000545856 ZNF815PA8K554 130 aa10.46□□□□□ -0.74
PRPF40A-212ENST00000545856 LECT2O14960 151 aa10.46□□□□□ -0.74
PRPF40A-212ENST00000545856 TSPEAR-AS2P59090 65 aa10.46□□□□□ -0.74
PRPF40A-212ENST00000545856 BOD1L2Q8IYS8 172 aa10.46□□□□□ -0.74
PRPF40A-212ENST00000545856 TIMM17BO60830 172 aa10.45□□□□□ -0.74
PRPF40A-212ENST00000545856 TNP2Q05952 138 aa10.45□□□□□ -0.74
PRPF40A-212ENST00000545856 HECTD4Q9Y4D8 3996 aa10.45□□□□□ -0.74
PRPF40A-212ENST00000545856 TLX1NBP0CAT3 122 aa10.44□□□□□ -0.74
PRPF40A-212ENST00000545856 CIRBPQ14011 172 aaKnown RBP10.44□□□□□ -0.74
PRPF40A-212ENST00000545856 C12orf57Q99622 126 aa10.44□□□□□ -0.74
PRPF40A-212ENST00000545856 PGPEP1Q9NXJ5 209 aa10.44□□□□□ -0.74
PRPF40A-212ENST00000545856 SLC25A34Q6PIV7 304 aa10.43□□□□□ -0.74
PRPF40A-212ENST00000545856 LINC00518Q8N0U6 118 aa10.43□□□□□ -0.74
PRPF40A-212ENST00000545856 C2orf82Q6UX34 121 aa10.42□□□□□ -0.74
PRPF40A-212ENST00000545856 Q6ZRU5 148 aa10.42□□□□□ -0.74
PRPF40A-212ENST00000545856 C9orf163Q8N9P6 203 aa10.42□□□□□ -0.74
PRPF40A-212ENST00000545856 DNAH11Q96DT5 4516 aa10.42□□□□□ -0.74
PRPF40A-212ENST00000545856 RYR3Q15413 4870 aa10.42□□□□□ -0.74
PRPF40A-212ENST00000545856 UNQ6190/PRO20217Q6UXQ8 127 aa10.41□□□□□ -0.74
PRPF40A-212ENST00000545856 SCGB1D4Q6XE38 83 aa10.41□□□□□ -0.74
PRPF40A-212ENST00000545856 Q6ZVH6 145 aa10.41□□□□□ -0.74
PRPF40A-212ENST00000545856 PCP2Q8IVA1 136 aa10.41□□□□□ -0.74
PRPF40A-212ENST00000545856 C6orf48Q9UBA6 75 aa10.41□□□□□ -0.74
PRPF40A-212ENST00000545856 ERG28Q9UKR5 140 aa10.41□□□□□ -0.74
PRPF40A-212ENST00000545856 PKD1P98161 4303 aa10.41□□□□□ -0.74
PRPF40A-212ENST00000545856 A0A0J9YXY3 114 aa10.4□□□□□ -0.74
PRPF40A-212ENST00000545856 TMEM238C9JI98 176 aa10.4□□□□□ -0.74
PRPF40A-212ENST00000545856 COPS9Q8WXC6 57 aa10.4□□□□□ -0.74
PRPF40A-212ENST00000545856 LINC00526Q96FQ7 95 aa10.4□□□□□ -0.74
PRPF40A-212ENST00000545856 UQCR10Q9UDW1 63 aa10.4□□□□□ -0.74
PRPF40A-212ENST00000545856 NDUFC2-KCTD14E9PQ53 114 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 SLPIP03973 132 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 MEIG1Q5JSS6 88 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 PPDPFQ9H3Y8 114 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 HIGD1BQ9P298 99 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 IGLV5-52A0A0A0MRZ9 124 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 LOC107984640A0A0U1RRK4 108 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 TSTD3H0UI37 97 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 C10orf25Q5T742 122 aa10.39□□□□□ -0.75
PRPF40A-212ENST00000545856 C14orf144Q96I85 54 aa10.37□□□□□ -0.75
PRPF40A-212ENST00000545856 SPANXB1Q9NS25 103 aaPredicted RBP10.37□□□□□ -0.75
PRPF40A-212ENST00000545856 LINC00474Q9P2X8 69 aa10.37□□□□□ -0.75
PRPF40A-212ENST00000545856 PTTG1IPP53801 180 aa10.36□□□□□ -0.75
PRPF40A-212ENST00000545856 TTTY13Q9BZ97 58 aa10.36□□□□□ -0.75
PRPF40A-212ENST00000545856 DNAH5Q8TE73 4624 aa10.35□□□□□ -0.75
PRPF40A-212ENST00000545856 MIEN1Q9BRT3 115 aa10.35□□□□□ -0.75
PRPF40A-212ENST00000545856 SPANXDQ9BXN6 97 aa10.35□□□□□ -0.75
PRPF40A-212ENST00000545856 SPANXCQ9NY87 97 aa10.35□□□□□ -0.75
PRPF40A-212ENST00000545856 LOC107984156A0A0G2JMH3 177 aa10.34□□□□□ -0.75
PRPF40A-212ENST00000545856 A0A1B0GVY2 172 aa10.34□□□□□ -0.75
PRPF40A-212ENST00000545856 IFITM1P13164 125 aa10.34□□□□□ -0.75
PRPF40A-212ENST00000545856 LINC00158P58513 81 aa10.34□□□□□ -0.75
PRPF40A-212ENST00000545856 ARL17AQ8IVW1 177 aa10.34□□□□□ -0.75
PRPF40A-212ENST00000545856 C16orf90A8MZG2 172 aa10.33□□□□□ -0.76
PRPF40A-212ENST00000545856 SMIM13P0DJ93 91 aa10.33□□□□□ -0.76
PRPF40A-212ENST00000545856 TAL2Q16559 108 aa10.33□□□□□ -0.76
PRPF40A-212ENST00000545856 LITAFQ99732 161 aa10.33□□□□□ -0.76
PRPF40A-212ENST00000545856 PFN2P35080 140 aa10.32□□□□□ -0.76
PRPF40A-212ENST00000545856 TP73-AS1Q9UF72 201 aa10.32□□□□□ -0.76
PRPF40A-212ENST00000545856 C9orf116Q5BN46 136 aaPredicted RBP10.31□□□□□ -0.76
PRPF40A-212ENST00000545856 SDIM1Q6ZPB5 146 aa10.31□□□□□ -0.76
PRPF40A-212ENST00000545856 RPL18AQ02543 176 aaKnown RBP10.3□□□□□ -0.76
PRPF40A-212ENST00000545856 Q6ZRP5 223 aa10.3□□□□□ -0.76
PRPF40A-212ENST00000545856 MIR7-3HGQ8N6C7 128 aa10.3□□□□□ -0.76
PRPF40A-212ENST00000545856 KRTAP10-2P60368 255 aa10.29□□□□□ -0.76
PRPF40A-212ENST00000545856 C2orf91Q6ZV80 131 aa10.29□□□□□ -0.76
PRPF40A-212ENST00000545856 HNRNPA3P51991 378 aaKnown RBP10.28□□□□□ -0.76
PRPF40A-212ENST00000545856 SRSF9Q13242 221 aaKnown RBP eCLIP10.28□□□□□ -0.76
PRPF40A-212ENST00000545856 SND1-IT1Q9HBX3 110 aa10.28□□□□□ -0.76
PRPF40A-212ENST00000545856 PLA2G2DQ9UNK4 145 aa10.28□□□□□ -0.76
PRPF40A-212ENST00000545856 DNAH8Q96JB1 4490 aa10.27□□□□□ -0.77
PRPF40A-212ENST00000545856 ADAMTSL4-AS1Q5T5F5 129 aa10.26□□□□□ -0.77
PRPF40A-212ENST00000545856 LCE2DQ5TA82 110 aaPredicted RBP10.26□□□□□ -0.77
PRPF40A-212ENST00000545856 LINC00308Q8TCZ7 52 aa10.26□□□□□ -0.77
PRPF40A-212ENST00000545856 PRO1933Q9H354 126 aa10.26□□□□□ -0.77
PRPF40A-212ENST00000545856 NDUFC2O95298 119 aa10.26□□□□□ -0.77
PRPF40A-212ENST00000545856 RPL24P83731 157 aaKnown RBP10.26□□□□□ -0.77
PRPF40A-212ENST00000545856 HSD52Q0P140 79 aa10.26□□□□□ -0.77
PRPF40A-212ENST00000545856 HIST1H4GQ99525 98 aa10.26□□□□□ -0.77
PRPF40A-212ENST00000545856 A0A096LNI7 61 aa10.25□□□□□ -0.77
PRPF40A-212ENST00000545856 A0A0U1RRA0 63 aa10.25□□□□□ -0.77
PRPF40A-212ENST00000545856 GAGE2BQ13066 116 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms