RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SYCNQ0VAF6 134 aa11.11□□□□□ -0.63
LIG1-204ENST00000542460 C6orf226Q5I0X4 101 aa11.11□□□□□ -0.63
LIG1-204ENST00000542460 CAMK2N2Q96S95 79 aa11.11□□□□□ -0.63
LIG1-204ENST00000542460 PRO1933Q9H354 126 aa11.11□□□□□ -0.63
LIG1-204ENST00000542460 KIAA1109Q2LD37 5005 aa11.11□□□□□ -0.63
LIG1-204ENST00000542460 IGLV5-39A0A0G2JS06 123 aa11.1□□□□□ -0.63
LIG1-204ENST00000542460 GCSHP23434 173 aa11.1□□□□□ -0.63
LIG1-204ENST00000542460 C9orf163Q8N9P6 203 aa11.1□□□□□ -0.63
LIG1-204ENST00000542460 TMEM223A0PJW6 202 aa11.09□□□□□ -0.63
LIG1-204ENST00000542460 CARD19Q96LW7 228 aa11.09□□□□□ -0.63
LIG1-204ENST00000542460 C20orf202A1L168 122 aa11.09□□□□□ -0.63
LIG1-204ENST00000542460 LINC00587B1AMM8 73 aa11.09□□□□□ -0.63
LIG1-204ENST00000542460 NDUFA1O15239 70 aa11.09□□□□□ -0.63
LIG1-204ENST00000542460 COX7B2Q8TF08 81 aa11.09□□□□□ -0.63
LIG1-204ENST00000542460 CKS1BP61024 79 aa11.08□□□□□ -0.64
LIG1-204ENST00000542460 Q6ZRU5 148 aa11.08□□□□□ -0.64
LIG1-204ENST00000542460 LINC01620Q4KN68 170 aa11.07□□□□□ -0.64
LIG1-204ENST00000542460 CXCL5P42830 114 aa11.06□□□□□ -0.64
LIG1-204ENST00000542460 C2orf82Q6UX34 121 aa11.06□□□□□ -0.64
LIG1-204ENST00000542460 UNQ6190/PRO20217Q6UXQ8 127 aa11.06□□□□□ -0.64
LIG1-204ENST00000542460 VAMP8Q9BV40 100 aa11.06□□□□□ -0.64
LIG1-204ENST00000542460 DYNC1H1Q14204 4646 aaKnown RBP11.06□□□□□ -0.64
LIG1-204ENST00000542460 RNF151Q2KHN1 245 aa11.05□□□□□ -0.64
LIG1-204ENST00000542460 KRTAP10-1P60331 282 aa11.04□□□□□ -0.64
LIG1-204ENST00000542460 HERVK_113P61574 105 aa11.04□□□□□ -0.64
LIG1-204ENST00000542460 C10orf25Q5T742 122 aa11.04□□□□□ -0.64
LIG1-204ENST00000542460 TRBV30A0A0K0K1B3 111 aa11.04□□□□□ -0.64
LIG1-204ENST00000542460 DDTP30046 118 aa11.04□□□□□ -0.64
LIG1-204ENST00000542460 SDIM1Q6ZPB5 146 aa11.04□□□□□ -0.64
LIG1-204ENST00000542460 DNAH5Q8TE73 4624 aa11.03□□□□□ -0.64
LIG1-204ENST00000542460 C6orf48Q9UBA6 75 aa11.03□□□□□ -0.64
LIG1-204ENST00000542460 PKIGQ9Y2B9 76 aa11.03□□□□□ -0.64
LIG1-204ENST00000542460 PAM16Q9Y3D7 125 aa11.03□□□□□ -0.64
LIG1-204ENST00000542460 CTAG1AP78358 180 aa11.01□□□□□ -0.65
LIG1-204ENST00000542460 LEPROTO15243 131 aa11□□□□□ -0.65
LIG1-204ENST00000542460 SFTA2Q6UW10 78 aa11□□□□□ -0.65
LIG1-204ENST00000542460 PLEKHB2Q96CS7 222 aa11□□□□□ -0.65
LIG1-204ENST00000542460 LOC107984640A0A0U1RRK4 108 aa10.99□□□□□ -0.65
LIG1-204ENST00000542460 ATOH7Q8N100 152 aa10.99□□□□□ -0.65
LIG1-204ENST00000542460 STPG4Q8N801 248 aa10.99□□□□□ -0.65
LIG1-204ENST00000542460 E9PLD3 99 aa10.99□□□□□ -0.65
LIG1-204ENST00000542460 SPATA45Q537H7 98 aa10.99□□□□□ -0.65
LIG1-204ENST00000542460 J3QQQ9 107 aa10.97□□□□□ -0.65
LIG1-204ENST00000542460 TLX1NBP0CAT3 122 aa10.97□□□□□ -0.65
LIG1-204ENST00000542460 C9orf116Q5BN46 136 aaPredicted RBP10.97□□□□□ -0.65
LIG1-204ENST00000542460 ZNF625Q96I27 306 aaPredicted RBP10.97□□□□□ -0.65
LIG1-204ENST00000542460 Q6ZSA8 131 aa10.96□□□□□ -0.65
LIG1-204ENST00000542460 FAM30AQ9NZY2 134 aa10.96□□□□□ -0.65
LIG1-204ENST00000542460 RYR1P21817 5038 aa10.96□□□□□ -0.66
LIG1-204ENST00000542460 PCLOQ9Y6V0 5065 aa10.96□□□□□ -0.66
LIG1-204ENST00000542460 LGALS3P17931 250 aaKnown RBP10.95□□□□□ -0.66
LIG1-204ENST00000542460 TSPEAR-AS2P59090 65 aa10.95□□□□□ -0.66
LIG1-204ENST00000542460 RPL18AQ02543 176 aaKnown RBP10.95□□□□□ -0.66
LIG1-204ENST00000542460 NDUFA12Q9UI09 145 aa10.95□□□□□ -0.66
LIG1-204ENST00000542460 LRP1BQ9NZR2 4599 aa10.95□□□□□ -0.66
LIG1-204ENST00000542460 A0A096LNI7 61 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 NDUFC2-KCTD14E9PQ53 114 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 LINC00474Q9P2X8 69 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 IGKV2-24A0A0C4DH68 120 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 MYMXA0A1B0GTQ4 84 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 NMUP48645 174 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 PTTG1IPP53801 180 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 HERV-K104P63124 156 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 GAGE2BQ13066 116 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 LBHQ53QV2 105 aaPredicted RBP10.94□□□□□ -0.66
LIG1-204ENST00000542460 Q6ZRP5 223 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 KRTAP17-1Q9BYP8 105 aa10.94□□□□□ -0.66
LIG1-204ENST00000542460 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.94□□□□□ -0.66
LIG1-204ENST00000542460 CHTF8P0CG12 524 aa10.93□□□□□ -0.66
LIG1-204ENST00000542460 CIRBPQ14011 172 aaKnown RBP10.93□□□□□ -0.66
LIG1-204ENST00000542460 MIEN1Q9BRT3 115 aa10.93□□□□□ -0.66
LIG1-204ENST00000542460 HSBP1L1C9JCN9 74 aa10.92□□□□□ -0.66
LIG1-204ENST00000542460 PANO1I0J062 215 aa10.92□□□□□ -0.66
LIG1-204ENST00000542460 COX17Q14061 63 aa10.92□□□□□ -0.66
LIG1-204ENST00000542460 MAJINQ3KP22 176 aa10.92□□□□□ -0.66
LIG1-204ENST00000542460 DPH3Q96FX2 82 aa10.92□□□□□ -0.66
LIG1-204ENST00000542460 C14orf144Q96I85 54 aa10.92□□□□□ -0.66
LIG1-204ENST00000542460 ERG28Q9UKR5 140 aa10.92□□□□□ -0.66
LIG1-204ENST00000542460 IGKV2D-26A0A0A0MRZ7 120 aa10.91□□□□□ -0.66
LIG1-204ENST00000542460 CDK2AP2O75956 126 aa10.91□□□□□ -0.66
LIG1-204ENST00000542460 ANKRD39Q53RE8 183 aa10.91□□□□□ -0.66
LIG1-204ENST00000542460 SPACA4Q8TDM5 124 aa10.91□□□□□ -0.66
LIG1-204ENST00000542460 PFN2P35080 140 aa10.9□□□□□ -0.66
LIG1-204ENST00000542460 GAGE2EQ4V326 116 aa10.9□□□□□ -0.66
LIG1-204ENST00000542460 UQCR10Q9UDW1 63 aa10.9□□□□□ -0.66
LIG1-204ENST00000542460 GAGE2DQ9UEU5 116 aa10.9□□□□□ -0.66
LIG1-204ENST00000542460 XGP55808 180 aa10.89□□□□□ -0.67
LIG1-204ENST00000542460 MEIG1Q5JSS6 88 aa10.88□□□□□ -0.67
LIG1-204ENST00000542460 DNAH8Q96JB1 4490 aa10.87□□□□□ -0.67
LIG1-204ENST00000542460 LINC00158P58513 81 aa10.87□□□□□ -0.67
LIG1-204ENST00000542460 SCXQ7RTU7 201 aa10.87□□□□□ -0.67
LIG1-204ENST00000542460 CIRBP-AS1Q8TBR5 109 aa10.87□□□□□ -0.67
LIG1-204ENST00000542460 A0A087WYN8 130 aa10.86□□□□□ -0.67
LIG1-204ENST00000542460 HNRNPA3P51991 378 aaKnown RBP10.86□□□□□ -0.67
LIG1-204ENST00000542460 ZNF815PA8K554 130 aa10.85□□□□□ -0.67
LIG1-204ENST00000542460 SMIM13P0DJ93 91 aa10.85□□□□□ -0.67
LIG1-204ENST00000542460 HAMPP81172 84 aa10.85□□□□□ -0.67
LIG1-204ENST00000542460 TTTY13Q9BZ97 58 aa10.85□□□□□ -0.67
LIG1-204ENST00000542460 XAGE1AQ9HD64 81 aa10.85□□□□□ -0.67
LIG1-204ENST00000542460 ABCA13Q86UQ4 5058 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms