RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ATP5L2Q7Z4Y8 100 aa9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 FAM19A3Q7Z5A8 133 aa9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 MRPL55Q7Z7F7 128 aaKnown RBP9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 Q8N8P6 123 aa9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 ALKBH7Q9BT30 221 aaPredicted RBP9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 MAP1LC3AQ9H492 121 aa9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 A0A1B0GVG6 124 aa9.02□□□□□ -0.97
CLSTN3-213ENST00000541953 TYMSOSQ8TAI1 123 aa9.02□□□□□ -0.97
CLSTN3-213ENST00000541953 LINC00167Q96N53 147 aa9.02□□□□□ -0.97
CLSTN3-213ENST00000541953 GAGE10A6NGK3 116 aa9.01□□□□□ -0.97
CLSTN3-213ENST00000541953 PEA15Q15121 130 aa9.01□□□□□ -0.97
CLSTN3-213ENST00000541953 KRTAP13-1Q8IUC0 172 aa9.01□□□□□ -0.97
CLSTN3-213ENST00000541953 VCX2Q9H322 139 aa9.01□□□□□ -0.97
CLSTN3-213ENST00000541953 TP73-AS1Q9UF72 201 aa9.01□□□□□ -0.97
CLSTN3-213ENST00000541953 A0A0U1RQV1 116 aa9□□□□□ -0.97
CLSTN3-213ENST00000541953 SCO1O75880 301 aa9□□□□□ -0.97
CLSTN3-213ENST00000541953 LBHQ53QV2 105 aaPredicted RBP9□□□□□ -0.97
CLSTN3-213ENST00000541953 F8VRH5 84 aa8.99□□□□□ -0.97
CLSTN3-213ENST00000541953 CRYGAP11844 174 aa8.99□□□□□ -0.97
CLSTN3-213ENST00000541953 RPL28P46779 137 aaKnown RBP8.99□□□□□ -0.97
CLSTN3-213ENST00000541953 LAMTOR2Q9Y2Q5 125 aa8.99□□□□□ -0.97
CLSTN3-213ENST00000541953 SMIM1B2RUZ4 78 aa8.98□□□□□ -0.97
CLSTN3-213ENST00000541953 HERVK_113P63121 156 aa8.97□□□□□ -0.97
CLSTN3-213ENST00000541953 ADCYAP1P18509 176 aa8.96□□□□□ -0.98
CLSTN3-213ENST00000541953 ORMDL2Q53FV1 153 aa8.96□□□□□ -0.98
CLSTN3-213ENST00000541953 KRTAP9-6A0A140TA67 174 aa8.94□□□□□ -0.98
CLSTN3-213ENST00000541953 NPSP0C0P6 89 aa8.94□□□□□ -0.98
CLSTN3-213ENST00000541953 GEMIN7Q9H840 131 aaKnown RBP8.94□□□□□ -0.98
CLSTN3-213ENST00000541953 IGLV5-37A0A075B6J1 123 aa8.93□□□□□ -0.98
CLSTN3-213ENST00000541953 RAB5BP61020 215 aa8.93□□□□□ -0.98
CLSTN3-213ENST00000541953 PNRC1Q12796 327 aaPredicted RBP8.93□□□□□ -0.98
CLSTN3-213ENST00000541953 COX7B2Q8TF08 81 aa8.93□□□□□ -0.98
CLSTN3-213ENST00000541953 TOMM6Q96B49 74 aa8.93□□□□□ -0.98
CLSTN3-213ENST00000541953 TIMM17AQ99595 171 aa8.93□□□□□ -0.98
CLSTN3-213ENST00000541953 IGKV2-28A0A075B6P5 120 aa8.92□□□□□ -0.98
CLSTN3-213ENST00000541953 IGKV2D-28P01615 120 aa8.92□□□□□ -0.98
CLSTN3-213ENST00000541953 SPINK8P0C7L1 97 aa8.92□□□□□ -0.98
CLSTN3-213ENST00000541953 CXCL5P42830 114 aa8.92□□□□□ -0.98
CLSTN3-213ENST00000541953 PRLHP81277 87 aa8.92□□□□□ -0.98
CLSTN3-213ENST00000541953 KIAA1644Q3SXP7 199 aa8.92□□□□□ -0.98
CLSTN3-213ENST00000541953 LINC00304Q8N9R0 145 aa8.92□□□□□ -0.98
CLSTN3-213ENST00000541953 IGLV5-45A0A087WSX0 123 aa8.91□□□□□ -0.98
CLSTN3-213ENST00000541953 UBE2AP49459 152 aa8.91□□□□□ -0.98
CLSTN3-213ENST00000541953 K7EMI3 77 aa8.9□□□□□ -0.98
CLSTN3-213ENST00000541953 SEC11AP67812 179 aa8.9□□□□□ -0.98
CLSTN3-213ENST00000541953 TPRXLQ17RH7 258 aa8.9□□□□□ -0.98
CLSTN3-213ENST00000541953 PDZD11Q5EBL8 140 aa8.9□□□□□ -0.98
CLSTN3-213ENST00000541953 Q8NDZ9 215 aa8.9□□□□□ -0.98
CLSTN3-213ENST00000541953 NXT2Q9NPJ8 142 aaKnown RBP8.9□□□□□ -0.98
CLSTN3-213ENST00000541953 TINCRA0A1B0GVN0 87 aa8.89□□□□□ -0.99
CLSTN3-213ENST00000541953 TMEM238C9JI98 176 aa8.89□□□□□ -0.99
CLSTN3-213ENST00000541953 FAM229BQ4G0N7 80 aa8.89□□□□□ -0.99
CLSTN3-213ENST00000541953 C3orf22Q8N5N4 141 aa8.89□□□□□ -0.99
CLSTN3-213ENST00000541953 IGLV7-46A0A075B6I9 117 aa8.88□□□□□ -0.99
CLSTN3-213ENST00000541953 ERASQ7Z444 233 aa8.88□□□□□ -0.99
CLSTN3-213ENST00000541953 NKAPP1Q8N9T2 125 aa8.88□□□□□ -0.99
CLSTN3-213ENST00000541953 SCGB3A1Q96QR1 104 aa8.88□□□□□ -0.99
CLSTN3-213ENST00000541953 CDIP1Q9H305 208 aa8.88□□□□□ -0.99
CLSTN3-213ENST00000541953 PAPPA-AS1Q5QFB9 102 aa8.87□□□□□ -0.99
CLSTN3-213ENST00000541953 ANAPC16Q96DE5 110 aa8.87□□□□□ -0.99
CLSTN3-213ENST00000541953 MT-ND4LP03901 98 aa8.86□□□□□ -0.99
CLSTN3-213ENST00000541953 VPREB1P12018 145 aa8.86□□□□□ -0.99
CLSTN3-213ENST00000541953 CST9LQ9H4G1 147 aa8.86□□□□□ -0.99
CLSTN3-213ENST00000541953 TMEM126AQ9H061 195 aa8.85□□□□□ -0.99
CLSTN3-213ENST00000541953 IGKV2D-26A0A0A0MRZ7 120 aa8.84□□□□□ -0.99
CLSTN3-213ENST00000541953 M0R378 163 aa8.84□□□□□ -0.99
CLSTN3-213ENST00000541953 PFN2P35080 140 aa8.84□□□□□ -0.99
CLSTN3-213ENST00000541953 FAM19A1Q7Z5A9 133 aa8.84□□□□□ -0.99
CLSTN3-213ENST00000541953 LINC01546A6NGU7 62 aa8.82□□□□□ -1
CLSTN3-213ENST00000541953 PLEKHB2Q96CS7 222 aa8.82□□□□□ -1
CLSTN3-213ENST00000541953 PPDPFQ9H3Y8 114 aa8.82□□□□□ -1
CLSTN3-213ENST00000541953 SND1-IT1Q9HBX3 110 aa8.82□□□□□ -1
CLSTN3-213ENST00000541953 IGLV5-39A0A0G2JS06 123 aa8.81□□□□□ -1
CLSTN3-213ENST00000541953 KRTAP4-1Q9BYQ7 146 aa8.81□□□□□ -1
CLSTN3-213ENST00000541953 PMVKQ15126 192 aa8.8□□□□□ -1
CLSTN3-213ENST00000541953 ATP5LO75964 103 aa8.79□□□□□ -1
CLSTN3-213ENST00000541953 G0S2P27469 103 aa8.79□□□□□ -1
CLSTN3-213ENST00000541953 ZNF625Q96I27 306 aaPredicted RBP8.79□□□□□ -1
CLSTN3-213ENST00000541953 A0A096LNJ9 63 aa8.78□□□□□ -1
CLSTN3-213ENST00000541953 IGLC3P0DOY3 106 aa8.78□□□□□ -1
CLSTN3-213ENST00000541953 ZNF22P17026 224 aaPredicted RBP8.78□□□□□ -1
CLSTN3-213ENST00000541953 RAB14P61106 215 aa8.78□□□□□ -1
CLSTN3-213ENST00000541953 ERG28Q9UKR5 140 aa8.78□□□□□ -1
CLSTN3-213ENST00000541953 CBLN2Q8IUK8 224 aa8.77□□□□□ -1.01
CLSTN3-213ENST00000541953 HIGD2AQ9BW72 106 aa8.77□□□□□ -1.01
CLSTN3-213ENST00000541953 MRPL18Q9H0U6 180 aaKnown RBP8.76□□□□□ -1.01
CLSTN3-213ENST00000541953 H3BRM9 83 aa8.75□□□□□ -1.01
CLSTN3-213ENST00000541953 KRTAP13-3Q3SY46 172 aa8.75□□□□□ -1.01
CLSTN3-213ENST00000541953 DAND5Q8N907 189 aa8.75□□□□□ -1.01
CLSTN3-213ENST00000541953 URB1-AS1Q96HZ7 61 aa8.75□□□□□ -1.01
CLSTN3-213ENST00000541953 SPRR4Q96PI1 79 aa8.75□□□□□ -1.01
CLSTN3-213ENST00000541953 FA2HQ7L5A8 372 aa8.72□□□□□ -1.01
CLSTN3-213ENST00000541953 GNB1LQ9BYB4 327 aa8.72□□□□□ -1.01
CLSTN3-213ENST00000541953 FSIP2Q5CZC0 6907 aa8.71□□□□□ -1.02
CLSTN3-213ENST00000541953 C11orf86A6NJI1 115 aa8.71□□□□□ -1.02
CLSTN3-213ENST00000541953 NDUFA6P56556 154 aa8.71□□□□□ -1.02
CLSTN3-213ENST00000541953 CTAG1AP78358 180 aa8.71□□□□□ -1.02
CLSTN3-213ENST00000541953 RPL24P83731 157 aaKnown RBP8.71□□□□□ -1.02
CLSTN3-213ENST00000541953 PMCHL1Q16048 86 aa8.71□□□□□ -1.02
CLSTN3-213ENST00000541953 Q8NBF4 154 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 1959.6 ms