RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 IGLV1-51P01701 117 aa10.16□□□□□ -0.78
SFSWAP-210ENST00000541286 SOSTDC1Q6X4U4 206 aa10.16□□□□□ -0.78
SFSWAP-210ENST00000541286 LINC00643Q86TS7 51 aa10.15□□□□□ -0.78
SFSWAP-210ENST00000541286 FAM240AA0A1B0GVK7 77 aa10.15□□□□□ -0.78
SFSWAP-210ENST00000541286 J3KT08 172 aa10.15□□□□□ -0.78
SFSWAP-210ENST00000541286 RPL36AP83881 106 aaKnown RBP10.15□□□□□ -0.78
SFSWAP-210ENST00000541286 LINC00308Q8TCZ7 52 aa10.15□□□□□ -0.78
SFSWAP-210ENST00000541286 RPL36ALQ969Q0 106 aaKnown RBP10.15□□□□□ -0.78
SFSWAP-210ENST00000541286 LINC00526Q96FQ7 95 aa10.15□□□□□ -0.78
SFSWAP-210ENST00000541286 HRCT1Q6UXD1 115 aa10.14□□□□□ -0.79
SFSWAP-210ENST00000541286 LOC100131303A0A0U1RQF7 123 aa10.14□□□□□ -0.79
SFSWAP-210ENST00000541286 UBE2L6O14933 153 aa10.14□□□□□ -0.79
SFSWAP-210ENST00000541286 SLPIP03973 132 aa10.14□□□□□ -0.79
SFSWAP-210ENST00000541286 PRKDCP78527 4128 aaKnown RBP10.14□□□□□ -0.79
SFSWAP-210ENST00000541286 COX7CP15954 63 aa10.13□□□□□ -0.79
SFSWAP-210ENST00000541286 LINC00242Q5T6M2 205 aa10.13□□□□□ -0.79
SFSWAP-210ENST00000541286 C1orf158Q8N1D5 194 aa10.13□□□□□ -0.79
SFSWAP-210ENST00000541286 SPANXDQ9BXN6 97 aa10.13□□□□□ -0.79
SFSWAP-210ENST00000541286 SPANXCQ9NY87 97 aa10.13□□□□□ -0.79
SFSWAP-210ENST00000541286 HIST1H4AP62805 103 aaKnown RBP10.13□□□□□ -0.79
SFSWAP-210ENST00000541286 C11orf68Q9H3H3 251 aaKnown RBP10.12□□□□□ -0.79
SFSWAP-210ENST00000541286 COX7A2LO14548 114 aa10.12□□□□□ -0.79
SFSWAP-210ENST00000541286 TRACP01848 142 aa10.11□□□□□ -0.79
SFSWAP-210ENST00000541286 DEFB121Q5J5C9 76 aa10.11□□□□□ -0.79
SFSWAP-210ENST00000541286 OXTP01178 125 aa10.11□□□□□ -0.79
SFSWAP-210ENST00000541286 C2orf48Q96LS8 159 aa10.11□□□□□ -0.79
SFSWAP-210ENST00000541286 C22orf24Q9Y442 160 aa10.11□□□□□ -0.79
SFSWAP-210ENST00000541286 NTM-AS1Q6ZSK4 140 aa10.1□□□□□ -0.79
SFSWAP-210ENST00000541286 DNAH3Q8TD57 4116 aa10.1□□□□□ -0.79
SFSWAP-210ENST00000541286 K7EQD1 137 aa10.09□□□□□ -0.79
SFSWAP-210ENST00000541286 NCR3O14931 201 aa10.09□□□□□ -0.79
SFSWAP-210ENST00000541286 C19orf73Q9NVV2 129 aa10.09□□□□□ -0.79
SFSWAP-210ENST00000541286 TRGV4A0A0C4DH28 118 aa10.09□□□□□ -0.79
SFSWAP-210ENST00000541286 NDUFA1O15239 70 aa10.09□□□□□ -0.79
SFSWAP-210ENST00000541286 DNAL4O96015 105 aa10.09□□□□□ -0.79
SFSWAP-210ENST00000541286 TENM2Q9NT68 2774 aa10.08□□□□□ -0.8
SFSWAP-210ENST00000541286 A0A087WYN8 130 aa10.08□□□□□ -0.8
SFSWAP-210ENST00000541286 SMIM1B2RUZ4 78 aa10.08□□□□□ -0.8
SFSWAP-210ENST00000541286 ACYP1P07311 99 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 BEAN1Q3B7T3 259 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 LINC00846Q9NV44 126 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 DEFB130BP0DP73 79 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 DEFB130AP0DP74 79 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 DEFB4AO15263 64 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 PFN2P35080 140 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 MRAPQ8TCY5 172 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 IMUPQ9GZP8 106 aa10.07□□□□□ -0.8
SFSWAP-210ENST00000541286 CSMD3Q7Z407 3707 aa10.06□□□□□ -0.8
SFSWAP-210ENST00000541286 C9orf66Q5T8R8 295 aa10.06□□□□□ -0.8
SFSWAP-210ENST00000541286 A0A096LPF7 62 aa10.06□□□□□ -0.8
SFSWAP-210ENST00000541286 MALP21145 153 aa10.06□□□□□ -0.8
SFSWAP-210ENST00000541286 LINC00158P58513 81 aa10.06□□□□□ -0.8
SFSWAP-210ENST00000541286 DPH3Q96FX2 82 aa10.06□□□□□ -0.8
SFSWAP-210ENST00000541286 C5orf38Q86SI9 138 aa10.05□□□□□ -0.8
SFSWAP-210ENST00000541286 TMEM243Q9BU79 118 aa10.05□□□□□ -0.8
SFSWAP-210ENST00000541286 FBN3Q75N90 2809 aa10.05□□□□□ -0.8
SFSWAP-210ENST00000541286 CLPSL2Q6UWE3 100 aa10.05□□□□□ -0.8
SFSWAP-210ENST00000541286 OR13C6PQ8NH95 151 aa10.05□□□□□ -0.8
SFSWAP-210ENST00000541286 LINC01600Q96MT4 127 aa10.05□□□□□ -0.8
SFSWAP-210ENST00000541286 RETNQ9HD89 108 aa10.04□□□□□ -0.8
SFSWAP-210ENST00000541286 CDC42SE2Q9NRR3 84 aa10.04□□□□□ -0.8
SFSWAP-210ENST00000541286 TRAV23DV6A0A075B6W5 121 aa10.04□□□□□ -0.8
SFSWAP-210ENST00000541286 GIG44P09565 113 aaPredicted RBP10.03□□□□□ -0.8
SFSWAP-210ENST00000541286 MIR7-3HGQ8N6C7 128 aa10.03□□□□□ -0.8
SFSWAP-210ENST00000541286 A8MTW9 85 aa10.03□□□□□ -0.8
SFSWAP-210ENST00000541286 ATOX1O00244 68 aa10.02□□□□□ -0.81
SFSWAP-210ENST00000541286 LECT2O14960 151 aa10.02□□□□□ -0.81
SFSWAP-210ENST00000541286 CRYGAP11844 174 aa10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 RPL18AQ02543 176 aaKnown RBP10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 LINC01561Q8N1V8 128 aa10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 LINC00337Q8N6G1 96 aa10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 IGHV4-30-4P0DP06 118 aa10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 IGLV4-60A0A075B6I1 120 aa10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 IGLV5-39A0A0G2JS06 123 aa10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 USP17L23D6RBM5 183 aa10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 DEFB135Q30KP9 77 aa10.01□□□□□ -0.81
SFSWAP-210ENST00000541286 IGLV5-45A0A087WSX0 123 aa10□□□□□ -0.81
SFSWAP-210ENST00000541286 TIMM17BO60830 172 aa10□□□□□ -0.81
SFSWAP-210ENST00000541286 F5H768 121 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 CRPP02741 224 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 WIPF1O43516 503 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 CXCL5P42830 114 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 FHL2Q14192 279 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 TRBV10-1A0A0K0K1A3 114 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 PAX4O43316 350 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 INAFM2P0DMQ5 153 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 SMIM11BQ8TCY0 68 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 SND1-IT1Q9HBX3 110 aa9.99□□□□□ -0.81
SFSWAP-210ENST00000541286 FAM19A1Q7Z5A9 133 aa9.98□□□□□ -0.81
SFSWAP-210ENST00000541286 HUWE1Q7Z6Z7 4374 aaKnown RBP9.98□□□□□ -0.81
SFSWAP-210ENST00000541286 XCL1P47992 114 aa9.98□□□□□ -0.81
SFSWAP-210ENST00000541286 COX7B2Q8TF08 81 aa9.98□□□□□ -0.81
SFSWAP-210ENST00000541286 C20orf197Q8N268 126 aa9.97□□□□□ -0.81
SFSWAP-210ENST00000541286 SERP2Q8N6R1 65 aa9.97□□□□□ -0.81
SFSWAP-210ENST00000541286 PRR3P79522 188 aaKnown RBP9.96□□□□□ -0.81
SFSWAP-210ENST00000541286 COPS9Q8WXC6 57 aa9.96□□□□□ -0.82
SFSWAP-210ENST00000541286 LYSTQ99698 3801 aa9.96□□□□□ -0.82
SFSWAP-210ENST00000541286 C6orf226Q5I0X4 101 aa9.95□□□□□ -0.82
SFSWAP-210ENST00000541286 IGKV2-28A0A075B6P5 120 aa9.95□□□□□ -0.82
SFSWAP-210ENST00000541286 IGKV2D-28P01615 120 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms