RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 FAM19A3Q7Z5A8 133 aa8.18□□□□□ -1.1
CLSTN3-208ENST00000538933 C5orf38Q86SI9 138 aa8.18□□□□□ -1.1
CLSTN3-208ENST00000538933 Q8N814 137 aa8.18□□□□□ -1.1
CLSTN3-208ENST00000538933 APOMO95445 188 aa8.17□□□□□ -1.1
CLSTN3-208ENST00000538933 HERVK_113P61574 105 aa8.17□□□□□ -1.1
CLSTN3-208ENST00000538933 COX6A2Q02221 97 aa8.17□□□□□ -1.1
CLSTN3-208ENST00000538933 HSBP1L1C9JCN9 74 aa8.16□□□□□ -1.1
CLSTN3-208ENST00000538933 MT1HL1P0DM35 61 aa8.16□□□□□ -1.1
CLSTN3-208ENST00000538933 CDKN2A-AS1Q9UH64 79 aa8.16□□□□□ -1.1
CLSTN3-208ENST00000538933 IGHV3OR16-9A0A0B4J2B5 98 aa8.15□□□□□ -1.1
CLSTN3-208ENST00000538933 ZNF22P17026 224 aaPredicted RBP8.15□□□□□ -1.1
CLSTN3-208ENST00000538933 FOXI1Q12951 378 aa8.15□□□□□ -1.1
CLSTN3-208ENST00000538933 CFAP161Q6P656 301 aa8.15□□□□□ -1.1
CLSTN3-208ENST00000538933 A0A087WZ39 114 aa8.14□□□□□ -1.11
CLSTN3-208ENST00000538933 SPINK8P0C7L1 97 aa8.14□□□□□ -1.11
CLSTN3-208ENST00000538933 ATOH7Q8N100 152 aa8.14□□□□□ -1.11
CLSTN3-208ENST00000538933 IGHV3-64A0A075B6Q5 118 aa8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 IGLV5-45A0A087WSX0 123 aa8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 IGHV1-58A0A0C4DH39 117 aa8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 PRSS2P07478 247 aa8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 JOSD1Q15040 202 aaPredicted RBP8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 SCXQ7RTU7 201 aa8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 LINC01561Q8N1V8 128 aa8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 ORAOV1Q8WV07 137 aa8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 TOMM7Q9P0U1 55 aa8.13□□□□□ -1.11
CLSTN3-208ENST00000538933 C14orf177Q52M58 125 aa8.12□□□□□ -1.11
CLSTN3-208ENST00000538933 KRTAP26-1Q6PEX3 210 aa8.12□□□□□ -1.11
CLSTN3-208ENST00000538933 TMEM223A0PJW6 202 aa8.11□□□□□ -1.11
CLSTN3-208ENST00000538933 USP17L23D6RBM5 183 aa8.11□□□□□ -1.11
CLSTN3-208ENST00000538933 ZNF561-AS1K7EIQ3 104 aa8.11□□□□□ -1.11
CLSTN3-208ENST00000538933 LECT2O14960 151 aa8.11□□□□□ -1.11
CLSTN3-208ENST00000538933 LOC105371267A0A1B0GV96 52 aa8.1□□□□□ -1.11
CLSTN3-208ENST00000538933 SMIM1B2RUZ4 78 aa8.1□□□□□ -1.11
CLSTN3-208ENST00000538933 HNRNPA3P51991 378 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-208ENST00000538933 SPAG11BQ08648 103 aa8.1□□□□□ -1.11
CLSTN3-208ENST00000538933 WFDC2Q14508 124 aa8.1□□□□□ -1.11
CLSTN3-208ENST00000538933 HIGD2BQ4VC39 106 aa8.1□□□□□ -1.11
CLSTN3-208ENST00000538933 hDV102S1A0JD36 115 aa8.09□□□□□ -1.11
CLSTN3-208ENST00000538933 PYY3Q5JQD4 70 aa8.09□□□□□ -1.11
CLSTN3-208ENST00000538933 STPG4Q8N801 248 aa8.09□□□□□ -1.11
CLSTN3-208ENST00000538933 COX7B2Q8TF08 81 aa8.09□□□□□ -1.11
CLSTN3-208ENST00000538933 PLEKHB2Q96CS7 222 aa8.09□□□□□ -1.11
CLSTN3-208ENST00000538933 VAMP8Q9BV40 100 aa8.09□□□□□ -1.11
CLSTN3-208ENST00000538933 LGALS3P17931 250 aaKnown RBP8.08□□□□□ -1.12
CLSTN3-208ENST00000538933 CKS1BP61024 79 aa8.08□□□□□ -1.12
CLSTN3-208ENST00000538933 S100A12P80511 92 aa8.08□□□□□ -1.12
CLSTN3-208ENST00000538933 C6orf226Q5I0X4 101 aa8.08□□□□□ -1.12
CLSTN3-208ENST00000538933 LEPROTO15243 131 aa8.07□□□□□ -1.12
CLSTN3-208ENST00000538933 NMUP48645 174 aa8.07□□□□□ -1.12
CLSTN3-208ENST00000538933 LINC01620Q4KN68 170 aa8.07□□□□□ -1.12
CLSTN3-208ENST00000538933 Q8IZM0 81 aa8.07□□□□□ -1.12
CLSTN3-208ENST00000538933 C15orf56Q8N910 161 aa8.07□□□□□ -1.12
CLSTN3-208ENST00000538933 CIRBP-AS1Q8TBR5 109 aa8.07□□□□□ -1.12
CLSTN3-208ENST00000538933 GVQW2A0A096LPI5 108 aaPredicted RBP8.06□□□□□ -1.12
CLSTN3-208ENST00000538933 E9PLD3 99 aa8.06□□□□□ -1.12
CLSTN3-208ENST00000538933 CXCL5P42830 114 aa8.06□□□□□ -1.12
CLSTN3-208ENST00000538933 CAMK2N2Q96S95 79 aa8.06□□□□□ -1.12
CLSTN3-208ENST00000538933 PAM16Q9Y3D7 125 aa8.06□□□□□ -1.12
CLSTN3-208ENST00000538933 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.05□□□□□ -1.12
CLSTN3-208ENST00000538933 IGLV5-39A0A0G2JS06 123 aa8.05□□□□□ -1.12
CLSTN3-208ENST00000538933 J3QQQ9 107 aa8.05□□□□□ -1.12
CLSTN3-208ENST00000538933 NDUFA1O15239 70 aa8.05□□□□□ -1.12
CLSTN3-208ENST00000538933 SMIM6P0DI80 62 aa8.05□□□□□ -1.12
CLSTN3-208ENST00000538933 MAJINQ3KP22 176 aa8.05□□□□□ -1.12
CLSTN3-208ENST00000538933 LINC00526Q96FQ7 95 aa8.05□□□□□ -1.12
CLSTN3-208ENST00000538933 KRTAP9-2Q9BYQ4 174 aa8.05□□□□□ -1.12
CLSTN3-208ENST00000538933 SPATA45Q537H7 98 aa8.04□□□□□ -1.12
CLSTN3-208ENST00000538933 ANKRD39Q53RE8 183 aa8.04□□□□□ -1.12
CLSTN3-208ENST00000538933 SFTA2Q6UW10 78 aa8.04□□□□□ -1.12
CLSTN3-208ENST00000538933 C2orf48Q96LS8 159 aa8.04□□□□□ -1.12
CLSTN3-208ENST00000538933 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.03□□□□□ -1.12
CLSTN3-208ENST00000538933 MYMXA0A1B0GTQ4 84 aa8.03□□□□□ -1.12
CLSTN3-208ENST00000538933 F8WDY8 70 aa8.03□□□□□ -1.12
CLSTN3-208ENST00000538933 SYCNQ0VAF6 134 aa8.03□□□□□ -1.12
CLSTN3-208ENST00000538933 NDUFA12Q9UI09 145 aa8.03□□□□□ -1.12
CLSTN3-208ENST00000538933 C2orf82Q6UX34 121 aa8.02□□□□□ -1.13
CLSTN3-208ENST00000538933 CARD19Q96LW7 228 aa8.02□□□□□ -1.13
CLSTN3-208ENST00000538933 IGKV2D-26A0A0A0MRZ7 120 aa8.01□□□□□ -1.13
CLSTN3-208ENST00000538933 ZNF815PA8K554 130 aa8.01□□□□□ -1.13
CLSTN3-208ENST00000538933 TSPEAR-AS2P59090 65 aa8.01□□□□□ -1.13
CLSTN3-208ENST00000538933 KIAA0087Q14695 138 aa8.01□□□□□ -1.13
CLSTN3-208ENST00000538933 MEIG1Q5JSS6 88 aa8.01□□□□□ -1.13
CLSTN3-208ENST00000538933 RPL37AP61513 92 aaKnown RBP8□□□□□ -1.13
CLSTN3-208ENST00000538933 HERV-K104P63124 156 aa8□□□□□ -1.13
CLSTN3-208ENST00000538933 UNQ6190/PRO20217Q6UXQ8 127 aa8□□□□□ -1.13
CLSTN3-208ENST00000538933 ZNF625Q96I27 306 aaPredicted RBP8□□□□□ -1.13
CLSTN3-208ENST00000538933 SCGB1D4Q6XE38 83 aa7.99□□□□□ -1.13
CLSTN3-208ENST00000538933 Q6ZRU5 148 aa7.99□□□□□ -1.13
CLSTN3-208ENST00000538933 FAT4Q6V0I7 4981 aa7.99□□□□□ -1.13
CLSTN3-208ENST00000538933 TRBV30A0A0K0K1B3 111 aa7.98□□□□□ -1.13
CLSTN3-208ENST00000538933 LINC00587B1AMM8 73 aa7.98□□□□□ -1.13
CLSTN3-208ENST00000538933 CIRBPQ14011 172 aaKnown RBP7.98□□□□□ -1.13
CLSTN3-208ENST00000538933 PCP2Q8IVA1 136 aa7.98□□□□□ -1.13
CLSTN3-208ENST00000538933 C12orf57Q99622 126 aa7.98□□□□□ -1.13
CLSTN3-208ENST00000538933 TTTY13Q9BZ97 58 aa7.98□□□□□ -1.13
CLSTN3-208ENST00000538933 PKIGQ9Y2B9 76 aa7.98□□□□□ -1.13
CLSTN3-208ENST00000538933 LPAP08519 4548 aa7.98□□□□□ -1.13
CLSTN3-208ENST00000538933 COX8AP10176 69 aa7.97□□□□□ -1.13
CLSTN3-208ENST00000538933 CNBPP62633 177 aaKnown RBP7.97□□□□□ -1.13
CLSTN3-208ENST00000538933 C14orf144Q96I85 54 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms