RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 TRAV7A0A075B6U4 112 aa7.79□□□□□ -1.16
CLIP1-209ENST00000537178 F8P00451 2351 aa7.79□□□□□ -1.16
CLIP1-209ENST00000537178 LAMA5O15230 3695 aa7.79□□□□□ -1.16
CLIP1-209ENST00000537178 XGP55808 180 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 FAM30AQ9NZY2 134 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 DSCAMO60469 2012 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 HCFC1P51610 2035 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 C10orf99Q6UWK7 81 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 CCDC179H3BU77 68 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 C10orf25Q5T742 122 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 Q6Q795 121 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 PRORYQ9H606 182 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 JMJD1CQ15652 2540 aa7.78□□□□□ -1.16
CLIP1-209ENST00000537178 CYSRT1A8MQ03 144 aa7.77□□□□□ -1.16
CLIP1-209ENST00000537178 LINC00208Q96KT6 92 aa7.77□□□□□ -1.16
CLIP1-209ENST00000537178 WFDC10AQ9H1F0 79 aa7.77□□□□□ -1.16
CLIP1-209ENST00000537178 ZNF462Q96JM2 2506 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 LOC100131303A0A0U1RQF7 123 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 M0R2N4 97 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 RPL28P46779 137 aaKnown RBP7.77□□□□□ -1.17
CLIP1-209ENST00000537178 LINC01006Q8NI28 216 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 CELA1Q9UNI1 258 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 EGFEM1PQ0D2K5 195 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 POM121L12Q8N7R1 296 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 ZNF702PQ9H963 129 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 CDC42SE2Q9NRR3 84 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 BOD1L1Q8NFC6 3051 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 ZZEF1O43149 2961 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 Q6ZS46 218 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 C22orf34Q6ZV56 151 aa7.77□□□□□ -1.17
CLIP1-209ENST00000537178 C11orf21Q9P2W6 132 aa7.76□□□□□ -1.17
CLIP1-209ENST00000537178 CHCHD7Q9BUK0 85 aa7.76□□□□□ -1.17
CLIP1-209ENST00000537178 Q8N6K4 173 aa7.75□□□□□ -1.17
CLIP1-209ENST00000537178 PRR9Q5T870 116 aa7.75□□□□□ -1.17
CLIP1-209ENST00000537178 C1orf137Q5JT78 98 aa7.75□□□□□ -1.17
CLIP1-209ENST00000537178 TLN2Q9Y4G6 2542 aa7.75□□□□□ -1.17
CLIP1-209ENST00000537178 PMAIP1Q13794 54 aa7.75□□□□□ -1.17
CLIP1-209ENST00000537178 C11orf71Q6IPW1 123 aa7.75□□□□□ -1.17
CLIP1-209ENST00000537178 MUC4Q99102 2169 aa7.75□□□□□ -1.17
CLIP1-209ENST00000537178 TRBV7-6A0A0J9YX20 115 aa7.74□□□□□ -1.17
CLIP1-209ENST00000537178 CNFNQ9BYD5 112 aa7.74□□□□□ -1.17
CLIP1-209ENST00000537178 NCOR2Q9Y618 2525 aa7.74□□□□□ -1.17
CLIP1-209ENST00000537178 ESRGQ1W209 222 aa7.74□□□□□ -1.17
CLIP1-209ENST00000537178 LY6G6CO95867 125 aa7.74□□□□□ -1.17
CLIP1-209ENST00000537178 LINC00242Q5T6M2 205 aa7.73□□□□□ -1.17
CLIP1-209ENST00000537178 M0QXV9 152 aa7.73□□□□□ -1.17
CLIP1-209ENST00000537178 CSMD1Q96PZ7 3565 aa7.73□□□□□ -1.17
CLIP1-209ENST00000537178 IGIPA6NJ69 53 aa7.73□□□□□ -1.17
CLIP1-209ENST00000537178 IGLV1-40P01703 118 aa7.73□□□□□ -1.17
CLIP1-209ENST00000537178 UNQ6190/PRO20217Q6UXQ8 127 aa7.73□□□□□ -1.17
CLIP1-209ENST00000537178 ARHGAP32A7KAX9 2087 aa7.72□□□□□ -1.17
CLIP1-209ENST00000537178 ZFYVE26Q68DK2 2539 aa7.72□□□□□ -1.17
CLIP1-209ENST00000537178 LY6G6DO95868 133 aa7.72□□□□□ -1.17
CLIP1-209ENST00000537178 PRYO14603 147 aa7.72□□□□□ -1.17
CLIP1-209ENST00000537178 Q8N814 137 aa7.71□□□□□ -1.17
CLIP1-209ENST00000537178 DMXL1Q9Y485 3027 aa7.71□□□□□ -1.17
CLIP1-209ENST00000537178 LINC00694P0DN24 101 aa7.71□□□□□ -1.18
CLIP1-209ENST00000537178 TRBV10-3A0A0K0K1G6 114 aa7.71□□□□□ -1.18
CLIP1-209ENST00000537178 SOSTDC1Q6X4U4 206 aa7.7□□□□□ -1.18
CLIP1-209ENST00000537178 SMIM1B2RUZ4 78 aa7.7□□□□□ -1.18
CLIP1-209ENST00000537178 LINC01547P58512 204 aaPredicted RBP7.7□□□□□ -1.18
CLIP1-209ENST00000537178 NANOS2P60321 138 aaKnown RBP7.7□□□□□ -1.18
CLIP1-209ENST00000537178 PRRC2CQ9Y520 2896 aaKnown RBP7.69□□□□□ -1.18
CLIP1-209ENST00000537178 TRBV7-7A0A0K0K1E9 115 aa7.69□□□□□ -1.18
CLIP1-209ENST00000537178 REG3GQ6UW15 175 aa7.69□□□□□ -1.18
CLIP1-209ENST00000537178 GAS8-AS1O95177 125 aa7.69□□□□□ -1.18
CLIP1-209ENST00000537178 CIRBP-AS1Q8TBR5 109 aa7.69□□□□□ -1.18
CLIP1-209ENST00000537178 ZFHX3Q15911 3703 aa7.69□□□□□ -1.18
CLIP1-209ENST00000537178 Q8N3U1 123 aa7.68□□□□□ -1.18
CLIP1-209ENST00000537178 FN1P02751 2386 aaKnown RBP7.68□□□□□ -1.18
CLIP1-209ENST00000537178 DCHS2Q6V1P9 2916 aa7.68□□□□□ -1.18
CLIP1-209ENST00000537178 IGHV6-1A0A0B4J1U7 121 aa7.68□□□□□ -1.18
CLIP1-209ENST00000537178 PRM2P04554 102 aa7.68□□□□□ -1.18
CLIP1-209ENST00000537178 C6orf223Q8N319 242 aa7.68□□□□□ -1.18
CLIP1-209ENST00000537178 RETNQ9HD89 108 aa7.68□□□□□ -1.18
CLIP1-209ENST00000537178 C18orf65Q6ZTR6 163 aa7.67□□□□□ -1.18
CLIP1-209ENST00000537178 A0A087WVE0 104 aa7.67□□□□□ -1.18
CLIP1-209ENST00000537178 ZNF843Q8N446 348 aa7.67□□□□□ -1.18
CLIP1-209ENST00000537178 TANC2Q9HCD6 1990 aa7.67□□□□□ -1.18
CLIP1-209ENST00000537178 NUPR2A6NF83 97 aa7.67□□□□□ -1.18
CLIP1-209ENST00000537178 ODF3L2Q3SX64 289 aa7.67□□□□□ -1.18
CLIP1-209ENST00000537178 URB1-AS1Q96HZ7 61 aa7.67□□□□□ -1.18
CLIP1-209ENST00000537178 X6R8D5 127 aa7.66□□□□□ -1.18
CLIP1-209ENST00000537178 IGF2RP11717 2491 aa7.66□□□□□ -1.18
CLIP1-209ENST00000537178 PIEZO2Q9H5I5 2752 aa7.66□□□□□ -1.18
CLIP1-209ENST00000537178 ABCA12Q86UK0 2595 aa7.66□□□□□ -1.18
CLIP1-209ENST00000537178 F8WDY8 70 aa7.65□□□□□ -1.18
CLIP1-209ENST00000537178 OXLD1Q5BKU9 147 aa7.65□□□□□ -1.18
CLIP1-209ENST00000537178 C9orf116Q5BN46 136 aaPredicted RBP7.65□□□□□ -1.18
CLIP1-209ENST00000537178 CSDC2Q9Y534 153 aaKnown RBP7.65□□□□□ -1.18
CLIP1-209ENST00000537178 PCOTHQ58A44 107 aa7.65□□□□□ -1.19
CLIP1-209ENST00000537178 A0A087WSZ3 146 aa7.64□□□□□ -1.19
CLIP1-209ENST00000537178 LINC00575Q6W349 94 aa7.64□□□□□ -1.19
CLIP1-209ENST00000537178 Q9BRP9 147 aa7.64□□□□□ -1.19
CLIP1-209ENST00000537178 TLN1Q9Y490 2541 aaKnown RBP7.63□□□□□ -1.19
CLIP1-209ENST00000537178 H0Y9P7 68 aa7.63□□□□□ -1.19
CLIP1-209ENST00000537178 A0A087WYN8 130 aa7.63□□□□□ -1.19
CLIP1-209ENST00000537178 SPINK1P00995 79 aa7.63□□□□□ -1.19
CLIP1-209ENST00000537178 FSHBP01225 129 aa7.63□□□□□ -1.19
CLIP1-209ENST00000537178 USP9XQ93008 2570 aaPredicted RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms