RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	S100A7L2	Q5SY68	101 aa		0.23	□□□□□ -2.37
CD44-238	ENST00000534296	NPVF	Q9HCQ7	196 aa		0.23	□□□□□ -2.37
CD44-238	ENST00000534296	ZNF831	Q5JPB2	1677 aa		0.23	□□□□□ -2.37
CD44-238	ENST00000534296	QRICH2	Q9H0J4	1663 aa		0.23	□□□□□ -2.37
CD44-238	ENST00000534296	EPRS	P07814	1512 aa	Known RBP	0.23	□□□□□ -2.37
CD44-238	ENST00000534296	PXDN	Q92626	1479 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	MLH3	Q9UHC1	1453 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	PRDM2	Q13029	1718 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	CLPSL1	A2RUU4	121 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	PIN1P1	O15428	100 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	RPS25	P62851	125 aa	Known RBP	0.22	□□□□□ -2.37
CD44-238	ENST00000534296	ZNF818P	Q6ZRF7	136 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	BAGE3	Q86Y29	109 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	AQP10	Q96PS8	301 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	TMEM191A	Q9H0A3	160 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296		U3KQA8	63 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	TTC37	Q6PGP7	1564 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	DNMBP	Q6XZF7	1577 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	DOCK2	Q92608	1830 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	ERVK-7	P63135	1459 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	COL14A1	Q05707	1796 aa	Known RBP	0.22	□□□□□ -2.37
CD44-238	ENST00000534296	VPS13B	Q7Z7G8	4022 aa		0.22	□□□□□ -2.37
CD44-238	ENST00000534296	TRAV1-2	A0A0B4J238	106 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	TRBV10-3	A0A0K0K1G6	114 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	FAM25A	B3EWG3	89 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	FAM25C	B3EWG5	89 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	FAM25G	B3EWG6	89 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	NDUFA2	O43678	99 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	C10orf82	Q8WW14	230 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296		Q96NJ1	140 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	PDCD10	Q9BUL8	212 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	DNAH17	Q9UFH2	4485 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	ADGRL2	O95490	1459 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	C1orf167	Q5SNV9	1468 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	TEX14	Q8IWB6	1497 aa		0.21	□□□□□ -2.38
CD44-238	ENST00000534296	PI4KA	P42356	2102 aa		0.2	□□□□□ -2.38
CD44-238	ENST00000534296	IBTK	Q9P2D0	1353 aa	Predicted RBP	0.2	□□□□□ -2.38
CD44-238	ENST00000534296	SPINK8	P0C7L1	97 aa		0.2	□□□□□ -2.38
CD44-238	ENST00000534296	UBE2D1	P51668	147 aa		0.2	□□□□□ -2.38
CD44-238	ENST00000534296	S100A12	P80511	92 aa		0.2	□□□□□ -2.38
CD44-238	ENST00000534296	CCDC58	Q4VC31	144 aa		0.2	□□□□□ -2.38
CD44-238	ENST00000534296		R4GMQ9	66 aa		0.2	□□□□□ -2.38
CD44-238	ENST00000534296	KIF21A	Q7Z4S6	1674 aa		0.2	□□□□□ -2.38
CD44-238	ENST00000534296	PLXNB2	O15031	1838 aa		0.2	□□□□□ -2.38
CD44-238	ENST00000534296	VPS13D	Q5THJ4	4388 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	MAP3K1	Q13233	1512 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	IFT172	Q9UG01	1749 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	ANKRD26	Q9UPS8	1709 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	CFTR	P13569	1480 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	MBD5	Q9P267	1494 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	ARPC4	P59998	168 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	CCL8	P80075	99 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	LINC00312	Q9Y6C7	94 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	DNAH11	Q96DT5	4516 aa		0.19	□□□□□ -2.38
CD44-238	ENST00000534296	SMG6	Q86US8	1419 aa	Known RBP	0.19	□□□□□ -2.38
CD44-238	ENST00000534296	PKD1L3	Q7Z443	1732 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	NALCN	Q8IZF0	1738 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	ZNF815P	A8K554	130 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	SSBP3-AS1	Q7Z2R9	100 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	SMIM4	Q8WVI0	70 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	DPH3	Q96FX2	82 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	TSC22D3	Q99576	134 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	WFDC6	Q9BQY6	131 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	DNAH2	Q9P225	4427 aa		0.18	□□□□□ -2.38
CD44-238	ENST00000534296	LRRC9	Q6ZRR7	1453 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296		A0A0G2JMZ2	1700 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296	C10orf142	B7Z368	130 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296	ZNF609	O15014	1411 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296	PPP1R17	O96001	155 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296	CFAP126	Q5VTH2	177 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296	C12orf73	Q69YU5	71 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296	PRO0255	Q9UI72	69 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296	C3	P01024	1663 aa		0.17	□□□□□ -2.38
CD44-238	ENST00000534296	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	0.17	□□□□□ -2.38
CD44-238	ENST00000534296	ABCA6	Q8N139	1617 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	FLG	P20930	4061 aa	Predicted RBP	0.16	□□□□□ -2.38
CD44-238	ENST00000534296	MAST1	Q9Y2H9	1570 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	TRAV13-2	A0A0B4J235	113 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	TRAV22	A0A0B4J277	110 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	CTXND1	A0A1B0GTU2	59 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	HIST1H1D	P16402	221 aa	Known RBP	0.16	□□□□□ -2.38
CD44-238	ENST00000534296	SELENOW	P63302	87 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	C10orf128	Q5T292	105 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296		Q5VSD8	79 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	ARL11	Q969Q4	196 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	CNFN	Q9BYD5	112 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	SPRR2G	Q9BYE4	73 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	SCN3B	Q9NY72	215 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	SPCS1	Q9Y6A9	102 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	PLCH1	Q4KWH8	1693 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	ZNF518A	Q6AHZ1	1483 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	ARAP2	Q8WZ64	1704 aa		0.16	□□□□□ -2.38
CD44-238	ENST00000534296	RGPD8	O14715	1765 aa	Predicted RBP	0.15	□□□□□ -2.39
CD44-238	ENST00000534296	RGPD5	Q99666	1765 aa		0.15	□□□□□ -2.39
CD44-238	ENST00000534296		K7EP13	123 aa		0.15	□□□□□ -2.39
CD44-238	ENST00000534296		M0R3E3	92 aa		0.15	□□□□□ -2.39
CD44-238	ENST00000534296	HMGN1	P05114	100 aa		0.15	□□□□□ -2.39
CD44-238	ENST00000534296		Q5VV11	94 aa		0.15	□□□□□ -2.39
CD44-238	ENST00000534296	LY75	O60449	1722 aa		0.15	□□□□□ -2.39
CD44-238	ENST00000534296	IFT140	Q96RY7	1462 aa		0.15	□□□□□ -2.39

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