RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SPAG11AQ6PDA7 123 aa3.55□□□□□ -1.84
CD44-236ENST00000533222 CDKN2A-AS1Q9UH64 79 aa3.55□□□□□ -1.84
CD44-236ENST00000533222 KIAA0100Q14667 2235 aaKnown RBP3.55□□□□□ -1.84
CD44-236ENST00000533222 DNAJC13O75165 2243 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 IGLV4-60A0A075B6I1 120 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 IGHV3-74A0A0B4J1X5 117 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 IGHV3-66A0A0C4DH42 116 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 MRPL33O75394 65 aaKnown RBP3.54□□□□□ -1.84
CD44-236ENST00000533222 IGLV1-47P01700 117 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 COX17Q14061 63 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 CASC10Q5T4H9 136 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 C9orf163Q8N9P6 203 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 GAFA1Q96PS6 74 aa3.54□□□□□ -1.84
CD44-236ENST00000533222 IGLV10-54A0A075B6I4 117 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 CLPSL1A2RUU4 121 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 IGLV1-44P01699 117 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 CCL18P55774 89 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 RNASE13Q5GAN3 156 aaKnown RBP3.53□□□□□ -1.84
CD44-236ENST00000533222 C1orf137Q5JT78 98 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 CXCL17Q6UXB2 119 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 KRTAP7-1Q8IUC3 87 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 RTTNQ86VV8 2226 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 CR1P17927 2039 aa3.53□□□□□ -1.84
CD44-236ENST00000533222 F5P12259 2224 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 RP1P56715 2156 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 IGLV11-55A0A075B6I3 123 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 TRGV4A0A0C4DH28 118 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 IGHV3-64DA0A0J9YX35 117 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 HIGD2BQ4VC39 106 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 CSNK1G2-AS1Q8NCQ2 148 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 FDCSPQ8NFU4 85 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 SPRR4Q96PI1 79 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 TTTY12Q9BZ98 90 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 SDK2Q58EX2 2172 aa3.52□□□□□ -1.85
CD44-236ENST00000533222 A0A096LNT2 108 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 K7ERS5 55 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 MIR22HGQ0VDD5 57 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 CCL14Q16627 93 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 REG3GQ6UW15 175 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 COA5Q86WW8 74 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 CAMK2N2Q96S95 79 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 CHCHD7Q9BUK0 85 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 DPM3Q9P2X0 92 aa3.51□□□□□ -1.85
CD44-236ENST00000533222 UQCR11O14957 56 aa3.5□□□□□ -1.85
CD44-236ENST00000533222 CHTF8P0CG12 524 aa3.5□□□□□ -1.85
CD44-236ENST00000533222 LINC00158P58513 81 aa3.5□□□□□ -1.85
CD44-236ENST00000533222 PRR34Q9NV39 138 aa3.5□□□□□ -1.85
CD44-236ENST00000533222 IGLV1-50A0A075B6I6 118 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 DEFB131BA0A096LNP1 70 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 KRTAP4-16G5E9R7 235 aaPredicted RBP3.49□□□□□ -1.85
CD44-236ENST00000533222 CD52P31358 61 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 SPINK7P58062 85 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 PRR4Q16378 134 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 LINC00612Q8N6U2 182 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 LINC01006Q8NI28 216 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 DMAC1Q96GE9 116 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 CCL26Q9Y258 94 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 NAV3Q8IVL0 2385 aa3.49□□□□□ -1.85
CD44-236ENST00000533222 COX7A1P24310 79 aa3.48□□□□□ -1.85
CD44-236ENST00000533222 C10orf55Q5SWW7 151 aa3.48□□□□□ -1.85
CD44-236ENST00000533222 CSAG1Q6PB30 78 aa3.48□□□□□ -1.85
CD44-236ENST00000533222 Q6ZQY7 126 aa3.48□□□□□ -1.85
CD44-236ENST00000533222 Q6ZR54 194 aa3.48□□□□□ -1.85
CD44-236ENST00000533222 SVILO95425 2214 aa3.48□□□□□ -1.85
CD44-236ENST00000533222 PRRC2BQ5JSZ5 2229 aaKnown RBP3.48□□□□□ -1.85
CD44-236ENST00000533222 IGHV1-46P01743 117 aa3.47□□□□□ -1.85
CD44-236ENST00000533222 KRTAP10-6P60371 365 aaPredicted RBP3.47□□□□□ -1.85
CD44-236ENST00000533222 KRTAP25-1Q3LHN0 102 aa3.47□□□□□ -1.85
CD44-236ENST00000533222 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
CD44-236ENST00000533222 LEAP2Q969E1 77 aa3.47□□□□□ -1.85
CD44-236ENST00000533222 IGLV5-48A0A075B6I7 105 aa3.46□□□□□ -1.86
CD44-236ENST00000533222 IGHV1-8P0DP01 117 aa3.46□□□□□ -1.86
CD44-236ENST00000533222 EGFEM1PQ0D2K5 195 aa3.46□□□□□ -1.86
CD44-236ENST00000533222 DEFB112Q30KQ8 113 aa3.46□□□□□ -1.86
CD44-236ENST00000533222 KRTAP26-1Q6PEX3 210 aa3.46□□□□□ -1.86
CD44-236ENST00000533222 LYPD2Q6UXB3 125 aa3.46□□□□□ -1.86
CD44-236ENST00000533222 DEC1Q9P2X7 70 aa3.46□□□□□ -1.86
CD44-236ENST00000533222 FAM215AQ9Y5M1 114 aa3.46□□□□□ -1.86
CD44-236ENST00000533222 LINC00959A0A1B0GUT2 108 aa3.45□□□□□ -1.86
CD44-236ENST00000533222 PRB4P10163 310 aaPredicted RBP3.45□□□□□ -1.86
CD44-236ENST00000533222 REG3AQ06141 175 aa3.45□□□□□ -1.86
CD44-236ENST00000533222 DEFB110Q30KQ9 67 aa3.45□□□□□ -1.86
CD44-236ENST00000533222 LINC00483Q53H64 154 aa3.45□□□□□ -1.86
CD44-236ENST00000533222 PRR9Q5T870 116 aa3.45□□□□□ -1.86
CD44-236ENST00000533222 KMT2BQ9UMN6 2715 aaPredicted RBP3.45□□□□□ -1.86
CD44-236ENST00000533222 SEC16AO15027 2179 aa3.45□□□□□ -1.86
CD44-236ENST00000533222 ZNF318Q5VUA4 2279 aa3.45□□□□□ -1.86
CD44-236ENST00000533222 CNTRLQ7Z7A1 2325 aa3.44□□□□□ -1.86
CD44-236ENST00000533222 IGKV2D-24A0A075B6R9 120 aa3.44□□□□□ -1.86
CD44-236ENST00000533222 M0R2N4 97 aa3.44□□□□□ -1.86
CD44-236ENST00000533222 IGLV6-57P01721 117 aa3.44□□□□□ -1.86
CD44-236ENST00000533222 ADM2Q7Z4H4 148 aa3.44□□□□□ -1.86
CD44-236ENST00000533222 Q8IZM0 81 aa3.44□□□□□ -1.86
CD44-236ENST00000533222 PTPRQQ9UMZ3 2332 aa3.43□□□□□ -1.86
CD44-236ENST00000533222 COX6A2Q02221 97 aa3.43□□□□□ -1.86
CD44-236ENST00000533222 C20orf166-AS1Q96NR2 134 aa3.43□□□□□ -1.86
CD44-236ENST00000533222 C8orf17Q9NRJ1 99 aa3.43□□□□□ -1.86
CD44-236ENST00000533222 KAAG1Q9UBP8 84 aa3.43□□□□□ -1.86
CD44-236ENST00000533222 CYSRT1A8MQ03 144 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 226.7 ms