RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CHTOPQ9Y3Y2 248 aaKnown RBP9.77□□□□□ -0.85
CPSF1-208ENST00000532560 C9orf118A6NHY6 69 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 LINC01620Q4KN68 170 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 RNASE13Q5GAN3 156 aaKnown RBP9.76□□□□□ -0.85
CPSF1-208ENST00000532560 CD164L2Q6UWJ8 174 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 GTF2H5Q6ZYL4 71 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 PCP2Q8IVA1 136 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 Q8N1X5 172 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 TIMM17AQ99595 171 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 FAM30AQ9NZY2 134 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 TP73-AS1Q9UF72 201 aa9.76□□□□□ -0.85
CPSF1-208ENST00000532560 FAM104AQ969W3 186 aa9.75□□□□□ -0.85
CPSF1-208ENST00000532560 PYGO1Q9Y3Y4 419 aa9.75□□□□□ -0.85
CPSF1-208ENST00000532560 GVQW2A0A096LPI5 108 aaPredicted RBP9.74□□□□□ -0.85
CPSF1-208ENST00000532560 C9orf163Q8N9P6 203 aa9.74□□□□□ -0.85
CPSF1-208ENST00000532560 CHAC1Q9BUX1 264 aa9.74□□□□□ -0.85
CPSF1-208ENST00000532560 ABCA13Q86UQ4 5058 aa9.73□□□□□ -0.85
CPSF1-208ENST00000532560 TRAV13-1A0A0B4J241 112 aa9.73□□□□□ -0.85
CPSF1-208ENST00000532560 E9PLD3 99 aa9.73□□□□□ -0.85
CPSF1-208ENST00000532560 SMIM13P0DJ93 91 aa9.73□□□□□ -0.85
CPSF1-208ENST00000532560 HERVK_113P61574 105 aa9.73□□□□□ -0.85
CPSF1-208ENST00000532560 OPRPNQ99935 248 aaPredicted RBP9.73□□□□□ -0.85
CPSF1-208ENST00000532560 IGKV2D-26A0A0A0MRZ7 120 aa9.72□□□□□ -0.85
CPSF1-208ENST00000532560 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.72□□□□□ -0.85
CPSF1-208ENST00000532560 HAMPP81172 84 aa9.72□□□□□ -0.85
CPSF1-208ENST00000532560 IGLV4-3A0A075B6K6 122 aa9.71□□□□□ -0.86
CPSF1-208ENST00000532560 IGHV1-58A0A0C4DH39 117 aa9.71□□□□□ -0.86
CPSF1-208ENST00000532560 SLPIP03973 132 aa9.71□□□□□ -0.86
CPSF1-208ENST00000532560 PMVKQ15126 192 aa9.71□□□□□ -0.86
CPSF1-208ENST00000532560 HIGD2BQ4VC39 106 aa9.71□□□□□ -0.86
CPSF1-208ENST00000532560 CEND1Q8N111 149 aa9.71□□□□□ -0.86
CPSF1-208ENST00000532560 KRTAP4-5Q9BYR2 181 aa9.71□□□□□ -0.86
CPSF1-208ENST00000532560 CBY1Q9Y3M2 126 aa9.71□□□□□ -0.86
CPSF1-208ENST00000532560 DNAH8Q96JB1 4490 aa9.7□□□□□ -0.86
CPSF1-208ENST00000532560 MYMXA0A1B0GTQ4 84 aa9.7□□□□□ -0.86
CPSF1-208ENST00000532560 GAGE10A6NGK3 116 aa9.7□□□□□ -0.86
CPSF1-208ENST00000532560 IGIPA6NJ69 53 aa9.7□□□□□ -0.86
CPSF1-208ENST00000532560 COX7A2LO14548 114 aa9.7□□□□□ -0.86
CPSF1-208ENST00000532560 Q6ZVH6 145 aa9.7□□□□□ -0.86
CPSF1-208ENST00000532560 SCXQ7RTU7 201 aa9.69□□□□□ -0.86
CPSF1-208ENST00000532560 K7EP34 96 aa9.68□□□□□ -0.86
CPSF1-208ENST00000532560 MALP21145 153 aa9.68□□□□□ -0.86
CPSF1-208ENST00000532560 SDIM1Q6ZPB5 146 aa9.68□□□□□ -0.86
CPSF1-208ENST00000532560 IGHV3-64A0A075B6Q5 118 aa9.67□□□□□ -0.86
CPSF1-208ENST00000532560 A0A1W2PPM0 123 aa9.67□□□□□ -0.86
CPSF1-208ENST00000532560 C11orf86A6NJI1 115 aa9.67□□□□□ -0.86
CPSF1-208ENST00000532560 EPM2AB3EWF7 344 aa9.67□□□□□ -0.86
CPSF1-208ENST00000532560 FABP2P12104 132 aa9.67□□□□□ -0.86
CPSF1-208ENST00000532560 CST9LQ9H4G1 147 aa9.67□□□□□ -0.86
CPSF1-208ENST00000532560 IGHV3OR16-9A0A0B4J2B5 98 aa9.66□□□□□ -0.86
CPSF1-208ENST00000532560 TMEM238LA0A1B0GVL6 79 aa9.66□□□□□ -0.86
CPSF1-208ENST00000532560 A6NJY4 79 aa9.66□□□□□ -0.86
CPSF1-208ENST00000532560 SMR3BP02814 79 aaPredicted RBP9.66□□□□□ -0.86
CPSF1-208ENST00000532560 Q5VSD8 79 aa9.66□□□□□ -0.86
CPSF1-208ENST00000532560 C5orf38Q86SI9 138 aa9.66□□□□□ -0.86
CPSF1-208ENST00000532560 AMELXQ99217 191 aa9.66□□□□□ -0.86
CPSF1-208ENST00000532560 A0A1B0GWB2 263 aa9.65□□□□□ -0.86
CPSF1-208ENST00000532560 H3BUT2 72 aa9.65□□□□□ -0.86
CPSF1-208ENST00000532560 ZNF561-AS1K7EIQ3 104 aa9.65□□□□□ -0.86
CPSF1-208ENST00000532560 APOMO95445 188 aa9.65□□□□□ -0.86
CPSF1-208ENST00000532560 HIST1H4GQ99525 98 aa9.65□□□□□ -0.86
CPSF1-208ENST00000532560 UBE2D1P51668 147 aa9.64□□□□□ -0.87
CPSF1-208ENST00000532560 FXYD2P54710 66 aa9.64□□□□□ -0.87
CPSF1-208ENST00000532560 CIRBPQ14011 172 aaKnown RBP9.64□□□□□ -0.87
CPSF1-208ENST00000532560 LINC00242Q5T6M2 205 aa9.64□□□□□ -0.87
CPSF1-208ENST00000532560 CIRBP-AS1Q8TBR5 109 aa9.64□□□□□ -0.87
CPSF1-208ENST00000532560 LINC00526Q96FQ7 95 aa9.64□□□□□ -0.87
CPSF1-208ENST00000532560 CARD19Q96LW7 228 aa9.64□□□□□ -0.87
CPSF1-208ENST00000532560 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.64□□□□□ -0.87
CPSF1-208ENST00000532560 IGLV4-69A0A075B6H9 119 aa9.63□□□□□ -0.87
CPSF1-208ENST00000532560 K7ERU9 68 aa9.63□□□□□ -0.87
CPSF1-208ENST00000532560 VCX2Q9H322 139 aa9.63□□□□□ -0.87
CPSF1-208ENST00000532560 FAM229AH3BQW9 127 aa9.62□□□□□ -0.87
CPSF1-208ENST00000532560 PANO1I0J062 215 aa9.62□□□□□ -0.87
CPSF1-208ENST00000532560 SYCNQ0VAF6 134 aa9.62□□□□□ -0.87
CPSF1-208ENST00000532560 PKIGQ9Y2B9 76 aa9.62□□□□□ -0.87
CPSF1-208ENST00000532560 SPCS1Q9Y6A9 102 aa9.62□□□□□ -0.87
CPSF1-208ENST00000532560 A0A087WZ39 114 aa9.61□□□□□ -0.87
CPSF1-208ENST00000532560 ZNF815PA8K554 130 aa9.61□□□□□ -0.87
CPSF1-208ENST00000532560 SPAG11BQ08648 103 aa9.61□□□□□ -0.87
CPSF1-208ENST00000532560 FAM19A3Q7Z5A8 133 aa9.61□□□□□ -0.87
CPSF1-208ENST00000532560 LINC00528Q8N1L1 170 aa9.61□□□□□ -0.87
CPSF1-208ENST00000532560 C2orf48Q96LS8 159 aa9.61□□□□□ -0.87
CPSF1-208ENST00000532560 TTTY13Q9BZ97 58 aa9.61□□□□□ -0.87
CPSF1-208ENST00000532560 SPANXB1Q9NS25 103 aaPredicted RBP9.61□□□□□ -0.87
CPSF1-208ENST00000532560 NHP2Q9NX24 153 aaKnown RBP9.61□□□□□ -0.87
CPSF1-208ENST00000532560 COX6A2Q02221 97 aa9.6□□□□□ -0.87
CPSF1-208ENST00000532560 SCGB1D4Q6XE38 83 aa9.6□□□□□ -0.87
CPSF1-208ENST00000532560 SPACA4Q8TDM5 124 aa9.6□□□□□ -0.87
CPSF1-208ENST00000532560 RAB37Q96AX2 223 aa9.6□□□□□ -0.87
CPSF1-208ENST00000532560 F8WDY8 70 aa9.59□□□□□ -0.87
CPSF1-208ENST00000532560 CHTF8P0CG12 524 aa9.59□□□□□ -0.87
CPSF1-208ENST00000532560 OCIAD2Q56VL3 154 aa9.59□□□□□ -0.87
CPSF1-208ENST00000532560 LINC01561Q8N1V8 128 aa9.59□□□□□ -0.87
CPSF1-208ENST00000532560 PLEKHB2Q96CS7 222 aa9.59□□□□□ -0.87
CPSF1-208ENST00000532560 CAMK2N2Q96S95 79 aa9.59□□□□□ -0.87
CPSF1-208ENST00000532560 VPS13BQ7Z7G8 4022 aa9.59□□□□□ -0.87
CPSF1-208ENST00000532560 FAT1Q14517 4588 aa9.58□□□□□ -0.88
CPSF1-208ENST00000532560 LEPROTO15243 131 aa9.58□□□□□ -0.88
CPSF1-208ENST00000532560 LYRM7Q5U5X0 104 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms