RNA–Protein interactions for RNA: ENST00000520580.5

SREK1-208, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 2

Gene SREK1, Length 2,369 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-208	ENST00000520580	MRPL57	Q9BQC6	102 aa	Known RBP	1.5	□□□□□ -2.17
SREK1-208	ENST00000520580	TRAV2	A0A0B4J234	112 aa		1.5	□□□□□ -2.17
SREK1-208	ENST00000520580	IGHV3-30	P01768	117 aa		1.5	□□□□□ -2.17
SREK1-208	ENST00000520580	IGHV3-30-5	P0DP03	117 aa		1.5	□□□□□ -2.17
SREK1-208	ENST00000520580		Q6AWC8	147 aa		1.5	□□□□□ -2.17
SREK1-208	ENST00000520580	COA4	Q9NYJ1	87 aa		1.5	□□□□□ -2.17
SREK1-208	ENST00000520580	TNF	P01375	233 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	KRTAP12-3	P60328	96 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	SVBP	Q8N300	66 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	PSME4	Q14997	1843 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	GOLGA4	Q13439	2230 aa	Known RBP	1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	ASCC3	Q8N3C0	2202 aa	Known RBP	1.49	□□□□□ -2.17
SREK1-208	ENST00000520580		A0A1B0GUL6	1792 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	RYR3	Q15413	4870 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	DCHS2	Q6V1P9	2916 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	ACAN	P16112	2415 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	TRAV12-3	A0A0B4J271	114 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	IGKV2-29	A2NJV5	120 aa	Predicted RBP	1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	TMEM218	A2RU14	115 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	HIGD1C	A8MV81	97 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	IGKV2D-40	P01614	121 aa	Predicted RBP	1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	NPC2	P61916	151 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	LCE3A	Q5TA76	89 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	RPRM	Q9NS64	109 aa		1.49	□□□□□ -2.17
SREK1-208	ENST00000520580	MUC22	E2RYF6	1773 aa	Predicted RBP	1.48	□□□□□ -2.17
SREK1-208	ENST00000520580	ARAP2	Q8WZ64	1704 aa		1.48	□□□□□ -2.17
SREK1-208	ENST00000520580	CBLN1	P23435	193 aa		1.48	□□□□□ -2.17
SREK1-208	ENST00000520580		Q86TA4	180 aa		1.48	□□□□□ -2.17
SREK1-208	ENST00000520580	C22orf24	Q9Y442	160 aa		1.48	□□□□□ -2.17
SREK1-208	ENST00000520580	CUBN	O60494	3623 aa		1.48	□□□□□ -2.17
SREK1-208	ENST00000520580	IER3IP1	Q9Y5U9	82 aa		1.48	□□□□□ -2.17
SREK1-208	ENST00000520580	TSC2	P49815	1807 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	IFNA17	P01571	189 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	IFITM1	P13164	125 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	HSD52	Q0P140	79 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580		Q8N8P6	123 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	1.47	□□□□□ -2.17	2e-6	■■■■□ 24
SREK1-208	ENST00000520580	BIRC6	Q9NR09	4857 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	UBR4	Q5T4S7	5183 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	KMT2C	Q8NEZ4	4911 aa	Known RBP	1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	MEGF8	Q7Z7M0	2845 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	SPINK8	P0C7L1	97 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	S100A10	P60903	97 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	NCMAP	Q5T1S8	102 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	SBSPON	Q8IVN8	264 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	ANKRD36C	Q5JPF3	1778 aa		1.47	□□□□□ -2.17
SREK1-208	ENST00000520580	PCLO	Q9Y6V0	5065 aa		1.46	□□□□□ -2.18
SREK1-208	ENST00000520580	CYP2G1P	Q6ZSU1	146 aa		1.46	□□□□□ -2.18
SREK1-208	ENST00000520580	LINC00526	Q96FQ7	95 aa		1.46	□□□□□ -2.18
SREK1-208	ENST00000520580	VWF	P04275	2813 aa		1.46	□□□□□ -2.18
SREK1-208	ENST00000520580	RYR1	P21817	5038 aa		1.46	□□□□□ -2.18
SREK1-208	ENST00000520580	FXYD1	O00168	92 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	FXYD3	Q14802	87 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	LINC00208	Q96KT6	92 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	CYSTM1	Q9H1C7	97 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	MED12	Q93074	2177 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	EPPK1	P58107	5090 aa	Known RBP	1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	WNK1	Q9H4A3	2382 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	VPS13C	Q709C8	3753 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	NBDY	A0A0U1RRE5	68 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	TACC2	O95359	2948 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	PATJ	Q8NI35	1801 aa		1.45	□□□□□ -2.18
SREK1-208	ENST00000520580	MGAM2	Q2M2H8	2515 aa		1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	C20orf197	Q8N268	126 aa		1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	CRCT1	Q9UGL9	99 aa		1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	MAP1A	P78559	2803 aa	Predicted RBP	1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	PRRC2C	Q9Y520	2896 aa	Known RBP	1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	HCG22	E2RYF7	251 aa		1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	C12orf73	Q69YU5	71 aa		1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	C8orf59	Q8N0T1	100 aa	Predicted RBP	1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	SMR3A	Q99954	134 aa		1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	BSN	Q9UPA5	3926 aa		1.44	□□□□□ -2.18
SREK1-208	ENST00000520580	NCR3	O14931	201 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	SNCA	P37840	140 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580		Q6ZQY7	126 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	CCL19	Q99731	98 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	HYDIN	Q4G0P3	5121 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	KNTC1	P50748	2209 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	ABCA1	O95477	2261 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	TRAV30	A0A087WSZ9	112 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	PIGBOS1	A0A0B4J2F0	54 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	FAM24A	A6NFZ4	105 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	S100A8	P05109	93 aa		1.43	□□□□□ -2.18
SREK1-208	ENST00000520580	MXRA5	Q9NR99	2828 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	FLG2	Q5D862	2391 aa	Predicted RBP	1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	ZNF469	Q96JG9	3925 aa	Predicted RBP	1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	TRAV13-2	A0A0B4J235	113 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	ZNF56	Q15929	161 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	XAF1	Q6GPH4	301 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	DEFB119	Q8N690	84 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	AMELY	Q99218	206 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	DLG5	Q8TDM6	1919 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	DOCK2	Q92608	1830 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	TRBV10-3	A0A0K0K1G6	114 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580		A0A1W2PPM0	123 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	LYNX1	P0DP58	116 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	EFNA4	P52798	201 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	NDUFA11	Q86Y39	141 aa		1.42	□□□□□ -2.18
SREK1-208	ENST00000520580	DOCK1	Q14185	1865 aa		1.42	□□□□□ -2.18

Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms