RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SPATA8Q6RVD6 105 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 SMIM5Q71RC9 77 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 DEFB107AQ8IZN7 70 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 FDCSPQ8NFU4 85 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 TMEM263Q8WUH6 116 aaKnown RBP0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 ZCCHC13Q8WW36 166 aaKnown RBP0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 PLAC4Q8WY50 150 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 LINC00472Q9H8W2 130 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 PROK2Q9HC23 129 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 PRXQ9BXM0 1461 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 ABCC6O95255 1503 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 ZMYM4Q5VZL5 1548 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 DIP2AQ14689 1571 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 LRP6O75581 1613 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 CROCC2H7BZ55 1655 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 KIF1AQ12756 1690 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 PREX1Q8TCU6 1659 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 ALS2Q96Q42 1657 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 POLR1AO95602 1720 aaPredicted RBP0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 QSER1Q2KHR3 1735 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 TIAM2Q8IVF5 1701 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 BCORQ6W2J9 1755 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 PAPPA2Q9BXP8 1791 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 DLG5Q8TDM6 1919 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 HEATR5BQ9P2D3 2071 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 ZGRF1Q86YA3 2104 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 BRWD1Q9NSI6 2320 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 GPR179Q6PRD1 2367 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 KMT2BQ9UMN6 2715 aaPredicted RBP0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 FBN1P35555 2871 aaKnown RBP0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 SDK2Q58EX2 2172 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 MED12Q93074 2177 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 NUMA1Q14980 2115 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 KIAA2026Q5HYC2 2103 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 MPDZO75970 2070 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 MDC1Q14676 2089 aaKnown RBP0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 PCDH15Q96QU1 1955 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 ZNF236Q9UL36 1845 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 COL14A1Q05707 1796 aaKnown RBP0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 LY75O60449 1722 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 RICTORQ6R327 1708 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 NRAPQ86VF7 1730 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 FMN2Q9NZ56 1722 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 MROH2AA6NES4 1674 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 C3P01024 1663 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 ITSN2Q9NZM3 1697 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 LAMC1P11047 1609 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 ADCY10Q96PN6 1610 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 SSC5DA1L4H1 1573 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 ERCC6L2Q5T890 1561 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 UGGT1Q9NYU2 1555 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 TULP4Q9NRJ4 1543 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 FANCD2Q9BXW9 1451 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 GVQW2A0A096LPI5 108 aaPredicted RBP0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 TRAV21A0A0B4J279 112 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 A0A0D9SFI3 127 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 LCE6AA0A183 80 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 A0A1B0GU69 56 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 G3V318 75 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 H3BVH4 76 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 K7EIL1 84 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 LY6G6CO95867 125 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 C3orf79P0CE67 100 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 S100A3P33764 101 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 RPL38P63173 70 aaKnown RBP0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 ATXN8Q156A1 80 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 NREPQ16612 68 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 C10orf113Q5VZT2 155 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 Q6ZRX8 168 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 GNG13Q9P2W3 67 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 HILPDAQ9Y5L2 63 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 CUL9Q8IWT3 2517 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 HEATR1Q9H583 2144 aaKnown RBP0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 ANKRD36A6QL64 1941 aa0.25□□□□□ -2.37
RNU4-54P-201ENST00000516428 ZNF831Q5JPB2 1677 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 NESP48681 1621 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 ABCA5Q8WWZ7 1642 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 NRXN3Q9Y4C0 1643 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 BIVM-ERCC5R4GMW8 1640 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 GLI2P10070 1586 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 NWD1Q149M9 1564 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 PRRC2BQ5JSZ5 2229 aaKnown RBP0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 ARFGEF3Q5TH69 2177 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 ALPK2Q86TB3 2170 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 BAZ2BQ9UIF8 2168 aaKnown RBP0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 SHANK1Q9Y566 2161 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 FXYD6-FXYD2A0A087WZ82 144 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 LINC00959A0A1B0GUT2 108 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 SNRNP200O75643 2136 aaKnown RBP0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 ANGP03950 147 aaKnown RBP0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 PRB1P04280 392 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 IFI6P09912 130 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 COX7BP24311 80 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 PI4KAP42356 2102 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 SPINK7P58062 85 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 HAMPP81172 84 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 DEFB112Q30KQ8 113 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 KRTAP13-1Q8IUC0 172 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 UBE2DNLQ8IWF7 75 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 WFDC9Q8NEX5 89 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 173.9 ms