RNA–Protein interactions for RNA: ENST00000515710.1

TRIO-223, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 3

Gene TRIO, Length 1,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-223	ENST00000515710	FOXI1	Q12951	378 aa		13.63	□□□□□ -0.23
TRIO-223	ENST00000515710	CIRBP	Q14011	172 aa	Known RBP	13.63	□□□□□ -0.23
TRIO-223	ENST00000515710	LITAF	Q99732	161 aa		13.63	□□□□□ -0.23
TRIO-223	ENST00000515710	TOMM7	Q9P0U1	55 aa		13.63	□□□□□ -0.23
TRIO-223	ENST00000515710	TSPAN13	O95857	204 aa		13.62	□□□□□ -0.23
TRIO-223	ENST00000515710	CCL18	P55774	89 aa		13.62	□□□□□ -0.23
TRIO-223	ENST00000515710	SPANXD	Q9BXN6	97 aa		13.62	□□□□□ -0.23
TRIO-223	ENST00000515710	SPANXC	Q9NY87	97 aa		13.62	□□□□□ -0.23
TRIO-223	ENST00000515710	DNAH9	Q9NYC9	4486 aa		13.62	□□□□□ -0.23
TRIO-223	ENST00000515710	SFTA2	Q6UW10	78 aa		13.62	□□□□□ -0.23
TRIO-223	ENST00000515710	UBE2W	Q96B02	151 aa		13.62	□□□□□ -0.23
TRIO-223	ENST00000515710	CDIP1	Q9H305	208 aa		13.62	□□□□□ -0.23
TRIO-223	ENST00000515710	APOM	O95445	188 aa		13.61	□□□□□ -0.23
TRIO-223	ENST00000515710	MIA	Q16674	131 aa		13.61	□□□□□ -0.23
TRIO-223	ENST00000515710	LINC00588	Q9Y4M8	146 aa		13.6	□□□□□ -0.23
TRIO-223	ENST00000515710	DNAH10OS	P0CZ25	163 aa		13.6	□□□□□ -0.23
TRIO-223	ENST00000515710		Q8IZM0	81 aa		13.6	□□□□□ -0.23
TRIO-223	ENST00000515710	MAL	P21145	153 aa		13.59	□□□□□ -0.23
TRIO-223	ENST00000515710	LYRM7	Q5U5X0	104 aa		13.59	□□□□□ -0.23
TRIO-223	ENST00000515710	PRSS2	P07478	247 aa		13.58	□□□□□ -0.23
TRIO-223	ENST00000515710	C6orf226	Q5I0X4	101 aa		13.58	□□□□□ -0.23
TRIO-223	ENST00000515710	ADAMTSL4-AS1	Q5T5F5	129 aa		13.58	□□□□□ -0.23
TRIO-223	ENST00000515710	MUSTN1	Q8IVN3	82 aa		13.58	□□□□□ -0.23
TRIO-223	ENST00000515710	MEIG1	Q5JSS6	88 aa		13.57	□□□□□ -0.24
TRIO-223	ENST00000515710	IFITM1	P13164	125 aa		13.56	□□□□□ -0.24
TRIO-223	ENST00000515710	UPK3B	Q9BT76	320 aa		13.56	□□□□□ -0.24
TRIO-223	ENST00000515710		M0QXV9	152 aa		13.55	□□□□□ -0.24
TRIO-223	ENST00000515710	PPDPFL	Q8WWR9	84 aa		13.55	□□□□□ -0.24
TRIO-223	ENST00000515710	ERG28	Q9UKR5	140 aa		13.55	□□□□□ -0.24
TRIO-223	ENST00000515710	SMCP	P49901	116 aa	Predicted RBP	13.54	□□□□□ -0.24
TRIO-223	ENST00000515710	KLK5	Q9Y337	293 aa	Predicted RBP	13.54	□□□□□ -0.24
TRIO-223	ENST00000515710	CXCL5	P42830	114 aa		13.53	□□□□□ -0.24
TRIO-223	ENST00000515710	KIAA0087	Q14695	138 aa		13.53	□□□□□ -0.24
TRIO-223	ENST00000515710		A4D1N5	150 aa		13.52	□□□□□ -0.24
TRIO-223	ENST00000515710	CFAP161	Q6P656	301 aa		13.52	□□□□□ -0.24
TRIO-223	ENST00000515710	COPS9	Q8WXC6	57 aa		13.52	□□□□□ -0.24
TRIO-223	ENST00000515710	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	13.52	□□□□□ -0.25
TRIO-223	ENST00000515710	TEN1	Q86WV5	123 aa		13.52	□□□□□ -0.25
TRIO-223	ENST00000515710	APLN	Q9ULZ1	77 aa		13.52	□□□□□ -0.25
TRIO-223	ENST00000515710	TRBV20-1	A0A075B6N2	111 aa		13.51	□□□□□ -0.25
TRIO-223	ENST00000515710	IBA57-AS1	B1ANH7	110 aa		13.51	□□□□□ -0.25
TRIO-223	ENST00000515710	KRTAP26-1	Q6PEX3	210 aa		13.51	□□□□□ -0.25
TRIO-223	ENST00000515710	C1orf43	Q9BWL3	253 aa		13.51	□□□□□ -0.25
TRIO-223	ENST00000515710	PGPEP1	Q9NXJ5	209 aa		13.51	□□□□□ -0.25
TRIO-223	ENST00000515710	NUPR2	A6NF83	97 aa		13.5	□□□□□ -0.25
TRIO-223	ENST00000515710	CFC1B	P0CG36	223 aa		13.5	□□□□□ -0.25
TRIO-223	ENST00000515710	CFC1	P0CG37	223 aa		13.5	□□□□□ -0.25
TRIO-223	ENST00000515710		A0A0U1RRA0	63 aa		13.49	□□□□□ -0.25
TRIO-223	ENST00000515710	DAND5	Q8N907	189 aa		13.49	□□□□□ -0.25
TRIO-223	ENST00000515710	LINC00308	Q8TCZ7	52 aa		13.49	□□□□□ -0.25
TRIO-223	ENST00000515710	PPDPF	Q9H3Y8	114 aa		13.49	□□□□□ -0.25
TRIO-223	ENST00000515710	DNHD1	Q96M86	4753 aa		13.48	□□□□□ -0.25
TRIO-223	ENST00000515710	MT-ATP8	P03928	68 aa		13.48	□□□□□ -0.25
TRIO-223	ENST00000515710	XG	P55808	180 aa		13.48	□□□□□ -0.25
TRIO-223	ENST00000515710		A0A0B4J2C4	111 aa		13.47	□□□□□ -0.25
TRIO-223	ENST00000515710	NPC2	P61916	151 aa		13.47	□□□□□ -0.25
TRIO-223	ENST00000515710	SPAG11B	Q08648	103 aa		13.47	□□□□□ -0.25
TRIO-223	ENST00000515710	LINC00158	P58513	81 aa		13.47	□□□□□ -0.25
TRIO-223	ENST00000515710	C2orf82	Q6UX34	121 aa		13.46	□□□□□ -0.25
TRIO-223	ENST00000515710	CARD19	Q96LW7	228 aa		13.46	□□□□□ -0.25
TRIO-223	ENST00000515710	LINC01600	Q96MT4	127 aa		13.46	□□□□□ -0.25
TRIO-223	ENST00000515710	IGKV2D-24	A0A075B6R9	120 aa		13.45	□□□□□ -0.26
TRIO-223	ENST00000515710	PRO1854	Q9UHT4	67 aa		13.45	□□□□□ -0.26
TRIO-223	ENST00000515710	MIR7-3HG	Q8N6C7	128 aa		13.44	□□□□□ -0.26
TRIO-223	ENST00000515710	COX17	Q14061	63 aa		13.43	□□□□□ -0.26
TRIO-223	ENST00000515710	UBE2DNL	Q8IWF7	75 aa		13.43	□□□□□ -0.26
TRIO-223	ENST00000515710	RMI2	Q96E14	147 aa		13.43	□□□□□ -0.26
TRIO-223	ENST00000515710	EIF4EBP3	O60516	100 aa	Predicted RBP	13.42	□□□□□ -0.26
TRIO-223	ENST00000515710	PFN2	P35080	140 aa		13.42	□□□□□ -0.26
TRIO-223	ENST00000515710	SOSTDC1	Q6X4U4	206 aa		13.42	□□□□□ -0.26
TRIO-223	ENST00000515710		Q9HAA7	133 aa		13.42	□□□□□ -0.26
TRIO-223	ENST00000515710	NTN5	Q8WTR8	489 aa	Predicted RBP	13.41	□□□□□ -0.26
TRIO-223	ENST00000515710		Q6Q795	121 aa		13.41	□□□□□ -0.26
TRIO-223	ENST00000515710	PSMB2	P49721	201 aa		13.4	□□□□□ -0.26
TRIO-223	ENST00000515710	C6orf223	Q8N319	242 aa		13.4	□□□□□ -0.26
TRIO-223	ENST00000515710	ANAPC13	Q9BS18	74 aa		13.4	□□□□□ -0.26
TRIO-223	ENST00000515710	COL7A1	Q02388	2944 aa		13.4	□□□□□ -0.26
TRIO-223	ENST00000515710	ZNF561-AS1	K7EIQ3	104 aa		13.39	□□□□□ -0.27
TRIO-223	ENST00000515710	UNQ6190/PRO20217	Q6UXQ8	127 aa		13.38	□□□□□ -0.27
TRIO-223	ENST00000515710	GVQW2	A0A096LPI5	108 aa	Predicted RBP	13.37	□□□□□ -0.27
TRIO-223	ENST00000515710	C15orf56	Q8N910	161 aa		13.37	□□□□□ -0.27
TRIO-223	ENST00000515710	MUC7	Q8TAX7	377 aa		13.37	□□□□□ -0.27
TRIO-223	ENST00000515710		F8WDY8	70 aa		13.37	□□□□□ -0.27
TRIO-223	ENST00000515710	LINC00526	Q96FQ7	95 aa		13.37	□□□□□ -0.27
TRIO-223	ENST00000515710	LOC107984156	A0A0G2JMH3	177 aa		13.36	□□□□□ -0.27
TRIO-223	ENST00000515710	TCL1B	O95988	128 aa		13.36	□□□□□ -0.27
TRIO-223	ENST00000515710	ARL17A	Q8IVW1	177 aa		13.36	□□□□□ -0.27
TRIO-223	ENST00000515710	C2orf48	Q96LS8	159 aa		13.36	□□□□□ -0.27
TRIO-223	ENST00000515710	HIGD2B	Q4VC39	106 aa		13.35	□□□□□ -0.27
TRIO-223	ENST00000515710	C10orf25	Q5T742	122 aa		13.35	□□□□□ -0.27
TRIO-223	ENST00000515710	DYNC2H1	Q8NCM8	4307 aa	Known RBP	13.34	□□□□□ -0.27
TRIO-223	ENST00000515710	ANKRD29	Q8N6D5	301 aa		13.34	□□□□□ -0.27
TRIO-223	ENST00000515710	SND1-IT1	Q9HBX3	110 aa		13.34	□□□□□ -0.27
TRIO-223	ENST00000515710	CAMK2N2	Q96S95	79 aa		13.33	□□□□□ -0.28
TRIO-223	ENST00000515710	STAB2	Q8WWQ8	2551 aa		13.33	□□□□□ -0.28
TRIO-223	ENST00000515710	TRBV30	A0A0K0K1B3	111 aa		13.33	□□□□□ -0.28
TRIO-223	ENST00000515710	C9orf116	Q5BN46	136 aa	Predicted RBP	13.33	□□□□□ -0.28
TRIO-223	ENST00000515710	SCGB1C2	P0DMR2	95 aa		13.31	□□□□□ -0.28
TRIO-223	ENST00000515710		Q1RN00	199 aa		13.31	□□□□□ -0.28
TRIO-223	ENST00000515710	C6orf48	Q9UBA6	75 aa		13.31	□□□□□ -0.28

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