RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459		F8VRH5	84 aa		9.16	□□□□□ -0.94
LMNA-223	ENST00000515459	LINC00173	Q6ZV60	143 aa		9.16	□□□□□ -0.94
LMNA-223	ENST00000515459	LINC00304	Q8N9R0	145 aa		9.16	□□□□□ -0.94
LMNA-223	ENST00000515459	AMELX	Q99217	191 aa		9.16	□□□□□ -0.94
LMNA-223	ENST00000515459	VCX2	Q9H322	139 aa		9.16	□□□□□ -0.94
LMNA-223	ENST00000515459	CYSLTR1	Q9Y271	337 aa		9.16	□□□□□ -0.94
LMNA-223	ENST00000515459	RPL37AP8	A6NKH3	93 aa		9.15	□□□□□ -0.94
LMNA-223	ENST00000515459	C2orf66	Q6UXQ4	117 aa		9.15	□□□□□ -0.94
LMNA-223	ENST00000515459	FAM19A3	Q7Z5A8	133 aa		9.15	□□□□□ -0.94
LMNA-223	ENST00000515459	LINC00167	Q96N53	147 aa		9.15	□□□□□ -0.94
LMNA-223	ENST00000515459	LOC389332	A0A1B0GUA5	103 aa		9.14	□□□□□ -0.95
LMNA-223	ENST00000515459	PRSS47	A8MTI9	375 aa		9.14	□□□□□ -0.95
LMNA-223	ENST00000515459	FAM229B	Q4G0N7	80 aa		9.14	□□□□□ -0.95
LMNA-223	ENST00000515459	IGLV7-46	A0A075B6I9	117 aa		9.13	□□□□□ -0.95
LMNA-223	ENST00000515459	NPS	P0C0P6	89 aa		9.13	□□□□□ -0.95
LMNA-223	ENST00000515459	HERVK_113	P63121	156 aa		9.13	□□□□□ -0.95
LMNA-223	ENST00000515459	MAP1LC3A	Q9H492	121 aa		9.13	□□□□□ -0.95
LMNA-223	ENST00000515459	LAMTOR2	Q9Y2Q5	125 aa		9.13	□□□□□ -0.95
LMNA-223	ENST00000515459	CXCL5	P42830	114 aa		9.12	□□□□□ -0.95
LMNA-223	ENST00000515459	UBE2A	P49459	152 aa		9.12	□□□□□ -0.95
LMNA-223	ENST00000515459	SEC11A	P67812	179 aa		9.12	□□□□□ -0.95
LMNA-223	ENST00000515459	CDKN2A-AS1	Q9UH64	79 aa		9.12	□□□□□ -0.95
LMNA-223	ENST00000515459	MUC17	Q685J3	4493 aa		9.11	□□□□□ -0.95
LMNA-223	ENST00000515459	GAGE10	A6NGK3	116 aa		9.11	□□□□□ -0.95
LMNA-223	ENST00000515459		C9JQL5	133 aa		9.11	□□□□□ -0.95
LMNA-223	ENST00000515459	ATP5L2	Q7Z4Y8	100 aa		9.11	□□□□□ -0.95
LMNA-223	ENST00000515459	KRTAP13-1	Q8IUC0	172 aa		9.11	□□□□□ -0.95
LMNA-223	ENST00000515459	IGKV2D-26	A0A0A0MRZ7	120 aa		9.1	□□□□□ -0.95
LMNA-223	ENST00000515459	IGIP	A6NJ69	53 aa		9.1	□□□□□ -0.95
LMNA-223	ENST00000515459	CTAG1A	P78358	180 aa		9.1	□□□□□ -0.95
LMNA-223	ENST00000515459	ORMDL2	Q53FV1	153 aa		9.1	□□□□□ -0.95
LMNA-223	ENST00000515459		Q8N8P6	123 aa		9.1	□□□□□ -0.95
LMNA-223	ENST00000515459	GEMIN7	Q9H840	131 aa	Known RBP	9.1	□□□□□ -0.95
LMNA-223	ENST00000515459	IGLV5-37	A0A075B6J1	123 aa		9.08	□□□□□ -0.96
LMNA-223	ENST00000515459	PNRC1	Q12796	327 aa	Predicted RBP	9.08	□□□□□ -0.96
LMNA-223	ENST00000515459	PAPPA-AS1	Q5QFB9	102 aa		9.08	□□□□□ -0.96
LMNA-223	ENST00000515459	NKAPP1	Q8N9T2	125 aa		9.08	□□□□□ -0.96
LMNA-223	ENST00000515459		K7EMI3	77 aa		9.07	□□□□□ -0.96
LMNA-223	ENST00000515459	SRSF3	P84103	164 aa	Known RBP	9.07	□□□□□ -0.96
LMNA-223	ENST00000515459	PEA15	Q15121	130 aa		9.07	□□□□□ -0.96
LMNA-223	ENST00000515459	PPDPF	Q9H3Y8	114 aa		9.07	□□□□□ -0.96
LMNA-223	ENST00000515459	SMIM1	B2RUZ4	78 aa		9.05	□□□□□ -0.96
LMNA-223	ENST00000515459	COX7B2	Q8TF08	81 aa		9.05	□□□□□ -0.96
LMNA-223	ENST00000515459	IGKV2-28	A0A075B6P5	120 aa		9.04	□□□□□ -0.96
LMNA-223	ENST00000515459	IGKV2D-28	P01615	120 aa		9.04	□□□□□ -0.96
LMNA-223	ENST00000515459	G0S2	P27469	103 aa		9.04	□□□□□ -0.96
LMNA-223	ENST00000515459	RAB5B	P61020	215 aa		9.04	□□□□□ -0.96
LMNA-223	ENST00000515459	PRLH	P81277	87 aa		9.04	□□□□□ -0.96
LMNA-223	ENST00000515459	PDZD11	Q5EBL8	140 aa		9.04	□□□□□ -0.96
LMNA-223	ENST00000515459	TIMM17A	Q99595	171 aa		9.04	□□□□□ -0.96
LMNA-223	ENST00000515459	RAB14	P61106	215 aa		9.03	□□□□□ -0.96
LMNA-223	ENST00000515459	NXT2	Q9NPJ8	142 aa	Known RBP	9.03	□□□□□ -0.96
LMNA-223	ENST00000515459	SCO1	O75880	301 aa		9.01	□□□□□ -0.97
LMNA-223	ENST00000515459	FAM19A1	Q7Z5A9	133 aa		9.01	□□□□□ -0.97
LMNA-223	ENST00000515459	TINCR	A0A1B0GVN0	87 aa		9	□□□□□ -0.97
LMNA-223	ENST00000515459	C3orf22	Q8N5N4	141 aa		9	□□□□□ -0.97
LMNA-223	ENST00000515459	TOMM6	Q96B49	74 aa		9	□□□□□ -0.97
LMNA-223	ENST00000515459	IGLV5-45	A0A087WSX0	123 aa		8.99	□□□□□ -0.97
LMNA-223	ENST00000515459	LINC01547	P58512	204 aa	Predicted RBP	8.99	□□□□□ -0.97
LMNA-223	ENST00000515459	SPAG11A	Q6PDA7	123 aa		8.99	□□□□□ -0.97
LMNA-223	ENST00000515459	ERAS	Q7Z444	233 aa		8.99	□□□□□ -0.97
LMNA-223	ENST00000515459	TMEM126A	Q9H061	195 aa		8.99	□□□□□ -0.97
LMNA-223	ENST00000515459	LCE2D	Q5TA82	110 aa	Predicted RBP	8.98	□□□□□ -0.97
LMNA-223	ENST00000515459	FP248	Q71RG6	208 aa	Predicted RBP	8.98	□□□□□ -0.97
LMNA-223	ENST00000515459	LINC00337	Q8N6G1	96 aa		8.98	□□□□□ -0.97
LMNA-223	ENST00000515459	PLEKHB2	Q96CS7	222 aa		8.98	□□□□□ -0.97
LMNA-223	ENST00000515459	TMEM238	C9JI98	176 aa		8.97	□□□□□ -0.97
LMNA-223	ENST00000515459	ATP5L	O75964	103 aa		8.97	□□□□□ -0.97
LMNA-223	ENST00000515459	SPINK8	P0C7L1	97 aa		8.97	□□□□□ -0.97
LMNA-223	ENST00000515459	SCGB3A1	Q96QR1	104 aa		8.97	□□□□□ -0.97
LMNA-223	ENST00000515459	ASB16-AS1	Q495Z4	193 aa		8.96	□□□□□ -0.98
LMNA-223	ENST00000515459		M0R378	163 aa		8.95	□□□□□ -0.98
LMNA-223	ENST00000515459	PFN2	P35080	140 aa		8.95	□□□□□ -0.98
LMNA-223	ENST00000515459	CBLN2	Q8IUK8	224 aa		8.95	□□□□□ -0.98
LMNA-223	ENST00000515459	ANAPC16	Q96DE5	110 aa		8.95	□□□□□ -0.98
LMNA-223	ENST00000515459	GNB1L	Q9BYB4	327 aa		8.95	□□□□□ -0.98
LMNA-223	ENST00000515459	VPREB1	P12018	145 aa		8.94	□□□□□ -0.98
LMNA-223	ENST00000515459	ADCYAP1	P18509	176 aa		8.94	□□□□□ -0.98
LMNA-223	ENST00000515459	KRTAP13-3	Q3SY46	172 aa		8.94	□□□□□ -0.98
LMNA-223	ENST00000515459	C4orf48	Q5BLP8	95 aa		8.94	□□□□□ -0.98
LMNA-223	ENST00000515459	MT-ND4L	P03901	98 aa		8.93	□□□□□ -0.98
LMNA-223	ENST00000515459	RPL24	P83731	157 aa	Known RBP	8.93	□□□□□ -0.98
LMNA-223	ENST00000515459	CLLU1	Q5K131	121 aa		8.93	□□□□□ -0.98
LMNA-223	ENST00000515459	MRPL18	Q9H0U6	180 aa	Known RBP	8.93	□□□□□ -0.98
LMNA-223	ENST00000515459	CST9L	Q9H4G1	147 aa		8.93	□□□□□ -0.98
LMNA-223	ENST00000515459	LINC01549	A6NIU2	74 aa		8.92	□□□□□ -0.98
LMNA-223	ENST00000515459		H3BRM9	83 aa		8.92	□□□□□ -0.98
LMNA-223	ENST00000515459	HIGD2A	Q9BW72	106 aa		8.92	□□□□□ -0.98
LMNA-223	ENST00000515459	SND1-IT1	Q9HBX3	110 aa		8.92	□□□□□ -0.98
LMNA-223	ENST00000515459	CRCT1	Q9UGL9	99 aa		8.92	□□□□□ -0.98
LMNA-223	ENST00000515459	IFITM2	Q01629	132 aa		8.91	□□□□□ -0.98
LMNA-223	ENST00000515459	SPRR4	Q96PI1	79 aa		8.91	□□□□□ -0.98
LMNA-223	ENST00000515459	SEC61B	P60468	96 aa	Known RBP	8.9	□□□□□ -0.98
LMNA-223	ENST00000515459	PMVK	Q15126	192 aa		8.9	□□□□□ -0.98
LMNA-223	ENST00000515459	KRTAP4-1	Q9BYQ7	146 aa		8.9	□□□□□ -0.98
LMNA-223	ENST00000515459	COX17	Q14061	63 aa		8.89	□□□□□ -0.99
LMNA-223	ENST00000515459	KIAA1644	Q3SXP7	199 aa		8.89	□□□□□ -0.99
LMNA-223	ENST00000515459	ERG28	Q9UKR5	140 aa		8.89	□□□□□ -0.99
LMNA-223	ENST00000515459	ZNF706	Q9Y5V0	76 aa	Predicted RBP	8.88	□□□□□ -0.99
LMNA-223	ENST00000515459	IGLV5-39	A0A0G2JS06	123 aa		8.87	□□□□□ -0.99

Retrieved 100 of 20,778 RNA–protein pairs in 182.9 ms