RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 UNQ6190/PRO20217Q6UXQ8 127 aa9.11□□□□□ -0.95
NUP54-216ENST00000514901 SPACA4Q8TDM5 124 aa9.1□□□□□ -0.95
NUP54-216ENST00000514901 F8VRH5 84 aa9.09□□□□□ -0.95
NUP54-216ENST00000514901 FAM229AH3BQW9 127 aa9.09□□□□□ -0.95
NUP54-216ENST00000514901 CHTF8P0CG12 524 aa9.09□□□□□ -0.95
NUP54-216ENST00000514901 ZNF22P17026 224 aaPredicted RBP9.09□□□□□ -0.95
NUP54-216ENST00000514901 C10orf25Q5T742 122 aa9.09□□□□□ -0.95
NUP54-216ENST00000514901 COX7B2Q8TF08 81 aa9.09□□□□□ -0.95
NUP54-216ENST00000514901 A0A096LNI7 61 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 IGKV2-24A0A0C4DH68 120 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 C11orf86A6NJI1 115 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 EPM2AB3EWF7 344 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 PANO1I0J062 215 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 SMR3BP02814 79 aaPredicted RBP9.08□□□□□ -0.96
NUP54-216ENST00000514901 SPINK8P0C7L1 97 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 TLX1NBP0CAT3 122 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 FABP4P15090 132 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 PTTG1IPP53801 180 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 MAJINQ3KP22 176 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 COA6Q5JTJ3 125 aaKnown RBP9.08□□□□□ -0.96
NUP54-216ENST00000514901 TMEM170BQ5T4T1 132 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 C2orf82Q6UX34 121 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 C6orf48Q9UBA6 75 aa9.08□□□□□ -0.96
NUP54-216ENST00000514901 FAT1Q14517 4588 aa9.07□□□□□ -0.96
NUP54-216ENST00000514901 A0A087WYN8 130 aa9.07□□□□□ -0.96
NUP54-216ENST00000514901 IGLV5-39A0A0G2JS06 123 aa9.07□□□□□ -0.96
NUP54-216ENST00000514901 GAGE2BQ13066 116 aa9.07□□□□□ -0.96
NUP54-216ENST00000514901 PLAC8Q9NZF1 115 aa9.07□□□□□ -0.96
NUP54-216ENST00000514901 RPL18AQ02543 176 aaKnown RBP9.06□□□□□ -0.96
NUP54-216ENST00000514901 MAP1LC3CQ9BXW4 147 aa9.06□□□□□ -0.96
NUP54-216ENST00000514901 VPS13BQ7Z7G8 4022 aa9.06□□□□□ -0.96
NUP54-216ENST00000514901 H0Y8G0 127 aa9.05□□□□□ -0.96
NUP54-216ENST00000514901 ODF1Q14990 250 aa9.05□□□□□ -0.96
NUP54-216ENST00000514901 LINC00528Q8N1L1 170 aa9.05□□□□□ -0.96
NUP54-216ENST00000514901 STPG4Q8N801 248 aa9.05□□□□□ -0.96
NUP54-216ENST00000514901 NDUFC2-KCTD14E9PQ53 114 aa9.04□□□□□ -0.96
NUP54-216ENST00000514901 Q5VSD8 79 aa9.04□□□□□ -0.96
NUP54-216ENST00000514901 KRTAP17-1Q9BYP8 105 aa9.04□□□□□ -0.96
NUP54-216ENST00000514901 PLA2G1BP04054 148 aaKnown RBP9.03□□□□□ -0.96
NUP54-216ENST00000514901 PLNP26678 52 aa9.03□□□□□ -0.96
NUP54-216ENST00000514901 SFTA2Q6UW10 78 aa9.03□□□□□ -0.96
NUP54-216ENST00000514901 TMEM223A0PJW6 202 aa9.02□□□□□ -0.97
NUP54-216ENST00000514901 Q6ZRP5 223 aa9.02□□□□□ -0.97
NUP54-216ENST00000514901 DPM2O94777 84 aa9.01□□□□□ -0.97
NUP54-216ENST00000514901 GAGE2EQ4V326 116 aa9.01□□□□□ -0.97
NUP54-216ENST00000514901 C9orf116Q5BN46 136 aaPredicted RBP9.01□□□□□ -0.97
NUP54-216ENST00000514901 GAGE2DQ9UEU5 116 aa9.01□□□□□ -0.97
NUP54-216ENST00000514901 SYS1-DBNDD2H3BUS1 97 aa9□□□□□ -0.97
NUP54-216ENST00000514901 C7orf33Q8WU49 177 aa9□□□□□ -0.97
NUP54-216ENST00000514901 KRTAP4-5Q9BYR2 181 aa9□□□□□ -0.97
NUP54-216ENST00000514901 IGKCP01834 107 aa8.99□□□□□ -0.97
NUP54-216ENST00000514901 SRRM2Q9UQ35 2752 aaKnown RBP8.99□□□□□ -0.97
NUP54-216ENST00000514901 HERVK_113P61574 105 aa8.98□□□□□ -0.97
NUP54-216ENST00000514901 PET117Q6UWS5 81 aa8.98□□□□□ -0.97
NUP54-216ENST00000514901 A0A1W2PNN7 141 aa8.97□□□□□ -0.97
NUP54-216ENST00000514901 S100A6P06703 90 aa8.96□□□□□ -0.98
NUP54-216ENST00000514901 RPL37AP61513 92 aaKnown RBP8.96□□□□□ -0.98
NUP54-216ENST00000514901 COX17Q14061 63 aa8.96□□□□□ -0.98
NUP54-216ENST00000514901 LINC01545Q5VT33 79 aa8.96□□□□□ -0.98
NUP54-216ENST00000514901 PLEKHB2Q96CS7 222 aa8.96□□□□□ -0.98
NUP54-216ENST00000514901 ZNF625Q96I27 306 aaPredicted RBP8.96□□□□□ -0.98
NUP54-216ENST00000514901 PMCHL2Q9BQD1 86 aa8.96□□□□□ -0.98
NUP54-216ENST00000514901 LEPROTO15243 131 aa8.94□□□□□ -0.98
NUP54-216ENST00000514901 C3orf79P0CE67 100 aa8.94□□□□□ -0.98
NUP54-216ENST00000514901 C9orf129Q5T035 196 aaKnown RBP8.94□□□□□ -0.98
NUP54-216ENST00000514901 ERG28Q9UKR5 140 aa8.94□□□□□ -0.98
NUP54-216ENST00000514901 C20orf202A1L168 122 aa8.93□□□□□ -0.98
NUP54-216ENST00000514901 LINC00587B1AMM8 73 aa8.93□□□□□ -0.98
NUP54-216ENST00000514901 INAFM2P0DMQ5 153 aa8.93□□□□□ -0.98
NUP54-216ENST00000514901 S100A2P29034 98 aa8.93□□□□□ -0.98
NUP54-216ENST00000514901 AKR1D1P51857 326 aa8.93□□□□□ -0.98
NUP54-216ENST00000514901 KRTDAPP60985 99 aa8.93□□□□□ -0.98
NUP54-216ENST00000514901 HERV-K104P63124 156 aa8.93□□□□□ -0.98
NUP54-216ENST00000514901 MYMXA0A1B0GTQ4 84 aa8.92□□□□□ -0.98
NUP54-216ENST00000514901 FAM168BA1KXE4 195 aa8.92□□□□□ -0.98
NUP54-216ENST00000514901 PFN2P35080 140 aa8.92□□□□□ -0.98
NUP54-216ENST00000514901 XAGE1AQ9HD64 81 aa8.92□□□□□ -0.98
NUP54-216ENST00000514901 NDUFA12Q9UI09 145 aa8.92□□□□□ -0.98
NUP54-216ENST00000514901 NMUP48645 174 aa8.91□□□□□ -0.98
NUP54-216ENST00000514901 KRTAP10-4P60372 401 aaPredicted RBP8.91□□□□□ -0.98
NUP54-216ENST00000514901 FAM19A5Q7Z5A7 132 aaPredicted RBP8.91□□□□□ -0.98
NUP54-216ENST00000514901 HIST3H2BBQ8N257 126 aa8.91□□□□□ -0.98
NUP54-216ENST00000514901 J3QQQ9 107 aa8.9□□□□□ -0.98
NUP54-216ENST00000514901 PLA2G2DQ9UNK4 145 aa8.9□□□□□ -0.98
NUP54-216ENST00000514901 E9PLD3 99 aa8.89□□□□□ -0.99
NUP54-216ENST00000514901 M0QXV9 152 aa8.89□□□□□ -0.99
NUP54-216ENST00000514901 LGALS3P17931 250 aaKnown RBP8.89□□□□□ -0.99
NUP54-216ENST00000514901 LINC00158P58513 81 aa8.89□□□□□ -0.99
NUP54-216ENST00000514901 LBHQ53QV2 105 aaPredicted RBP8.89□□□□□ -0.99
NUP54-216ENST00000514901 PHF5AQ7RTV0 110 aaKnown RBP8.89□□□□□ -0.99
NUP54-216ENST00000514901 HIST1H2BLQ99880 126 aa8.89□□□□□ -0.99
NUP54-216ENST00000514901 TP73-AS1Q9UF72 201 aa8.89□□□□□ -0.99
NUP54-216ENST00000514901 ABCA13Q86UQ4 5058 aa8.89□□□□□ -0.99
NUP54-216ENST00000514901 FLG2Q5D862 2391 aaPredicted RBP8.88□□□□□ -0.99
NUP54-216ENST00000514901 MEIG1Q5JSS6 88 aa8.88□□□□□ -0.99
NUP54-216ENST00000514901 KRTAP7-1Q8IUC3 87 aa8.88□□□□□ -0.99
NUP54-216ENST00000514901 TSPEAR-AS2P59090 65 aa8.87□□□□□ -0.99
NUP54-216ENST00000514901 PRR3P79522 188 aaKnown RBP8.87□□□□□ -0.99
NUP54-216ENST00000514901 SERTAD4-AS1Q5TG53 156 aa8.87□□□□□ -0.99
NUP54-216ENST00000514901 SND1-IT1Q9HBX3 110 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms