RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 CDKN2A-AS1Q9UH64 79 aa13.18□□□□□ -0.3
USP53-208ENST00000514305 PLNP26678 52 aa13.17□□□□□ -0.3
USP53-208ENST00000514305 AKR1D1P51857 326 aa13.17□□□□□ -0.3
USP53-208ENST00000514305 SPAG11BQ08648 103 aa13.16□□□□□ -0.3
USP53-208ENST00000514305 HIGD2BQ4VC39 106 aa13.16□□□□□ -0.3
USP53-208ENST00000514305 TMEM170BQ5T4T1 132 aa13.16□□□□□ -0.3
USP53-208ENST00000514305 PET117Q6UWS5 81 aa13.16□□□□□ -0.3
USP53-208ENST00000514305 MRPL35Q9NZE8 188 aaKnown RBP13.16□□□□□ -0.3
USP53-208ENST00000514305 PKIGQ9Y2B9 76 aa13.16□□□□□ -0.3
USP53-208ENST00000514305 IGLV4-69A0A075B6H9 119 aa13.15□□□□□ -0.3
USP53-208ENST00000514305 C20orf202A1L168 122 aa13.15□□□□□ -0.3
USP53-208ENST00000514305 SYS1-DBNDD2H3BUS1 97 aa13.15□□□□□ -0.3
USP53-208ENST00000514305 ODF1Q14990 250 aa13.15□□□□□ -0.3
USP53-208ENST00000514305 HIST3H2BBQ8N257 126 aa13.15□□□□□ -0.3
USP53-208ENST00000514305 C2orf48Q96LS8 159 aa13.15□□□□□ -0.3
USP53-208ENST00000514305 DPM2O94777 84 aa13.14□□□□□ -0.31
USP53-208ENST00000514305 SNRPEP62304 92 aaKnown RBP13.14□□□□□ -0.31
USP53-208ENST00000514305 CNBPP62633 177 aaKnown RBP13.14□□□□□ -0.31
USP53-208ENST00000514305 Q5VSD8 79 aa13.14□□□□□ -0.31
USP53-208ENST00000514305 INAFM2P0DMQ5 153 aa13.13□□□□□ -0.31
USP53-208ENST00000514305 KRTDAPP60985 99 aa13.13□□□□□ -0.31
USP53-208ENST00000514305 C6orf226Q5I0X4 101 aa13.13□□□□□ -0.31
USP53-208ENST00000514305 C5orf52A6NGY3 159 aa13.12□□□□□ -0.31
USP53-208ENST00000514305 C11orf86A6NJI1 115 aa13.12□□□□□ -0.31
USP53-208ENST00000514305 ZNF22P17026 224 aaPredicted RBP13.12□□□□□ -0.31
USP53-208ENST00000514305 CAMK2N2Q96S95 79 aa13.12□□□□□ -0.31
USP53-208ENST00000514305 KRTAP9-9Q9BYP9 154 aa13.12□□□□□ -0.31
USP53-208ENST00000514305 KRTAP9-4Q9BYQ2 154 aa13.12□□□□□ -0.31
USP53-208ENST00000514305 IGKCP01834 107 aa13.11□□□□□ -0.31
USP53-208ENST00000514305 C3orf79P0CE67 100 aa13.11□□□□□ -0.31
USP53-208ENST00000514305 CXCL5P42830 114 aa13.11□□□□□ -0.31
USP53-208ENST00000514305 Q8IZM0 81 aa13.11□□□□□ -0.31
USP53-208ENST00000514305 TOMM7Q9P0U1 55 aa13.11□□□□□ -0.31
USP53-208ENST00000514305 NDUFA1O15239 70 aa13.1□□□□□ -0.31
USP53-208ENST00000514305 CKS1BP61024 79 aa13.1□□□□□ -0.31
USP53-208ENST00000514305 HERVK_113P61574 105 aa13.1□□□□□ -0.31
USP53-208ENST00000514305 SYCNQ0VAF6 134 aa13.1□□□□□ -0.31
USP53-208ENST00000514305 HIST1H2BLQ99880 126 aa13.1□□□□□ -0.31
USP53-208ENST00000514305 SMIM1B2RUZ4 78 aa13.09□□□□□ -0.31
USP53-208ENST00000514305 SMR3BP02814 79 aaPredicted RBP13.09□□□□□ -0.31
USP53-208ENST00000514305 SPINK8P0C7L1 97 aa13.09□□□□□ -0.31
USP53-208ENST00000514305 CARD19Q96LW7 228 aa13.09□□□□□ -0.31
USP53-208ENST00000514305 C9orf163Q8N9P6 203 aa13.08□□□□□ -0.32
USP53-208ENST00000514305 LINC01545Q5VT33 79 aa13.07□□□□□ -0.32
USP53-208ENST00000514305 SFTA2Q6UW10 78 aa13.07□□□□□ -0.32
USP53-208ENST00000514305 COX7B2Q8TF08 81 aa13.07□□□□□ -0.32
USP53-208ENST00000514305 TMEM223A0PJW6 202 aa13.05□□□□□ -0.32
USP53-208ENST00000514305 HAMPP81172 84 aa13.05□□□□□ -0.32
USP53-208ENST00000514305 KIAA0087Q14695 138 aa13.05□□□□□ -0.32
USP53-208ENST00000514305 RNF151Q2KHN1 245 aa13.05□□□□□ -0.32
USP53-208ENST00000514305 LINC00526Q96FQ7 95 aa13.05□□□□□ -0.32
USP53-208ENST00000514305 IGLV5-39A0A0G2JS06 123 aa13.04□□□□□ -0.32
USP53-208ENST00000514305 PMCHL2Q9BQD1 86 aa13.04□□□□□ -0.32
USP53-208ENST00000514305 TMA7Q9Y2S6 64 aaKnown RBP13.04□□□□□ -0.32
USP53-208ENST00000514305 TRBV30A0A0K0K1B3 111 aa13.03□□□□□ -0.32
USP53-208ENST00000514305 SLPIP03973 132 aa13.02□□□□□ -0.33
USP53-208ENST00000514305 Q6ZRU5 148 aa13.02□□□□□ -0.33
USP53-208ENST00000514305 VPS13BQ7Z7G8 4022 aa13.02□□□□□ -0.33
USP53-208ENST00000514305 PLEKHB2Q96CS7 222 aa13.01□□□□□ -0.33
USP53-208ENST00000514305 FAT1Q14517 4588 aa12.99□□□□□ -0.33
USP53-208ENST00000514305 UNQ6190/PRO20217Q6UXQ8 127 aa12.99□□□□□ -0.33
USP53-208ENST00000514305 LINC00474Q9P2X8 69 aa12.99□□□□□ -0.33
USP53-208ENST00000514305 DMBT1Q9UGM3 2413 aaPredicted RBP12.99□□□□□ -0.33
USP53-208ENST00000514305 LOC107984640A0A0U1RRK4 108 aa12.98□□□□□ -0.33
USP53-208ENST00000514305 LEPROTO15243 131 aa12.98□□□□□ -0.33
USP53-208ENST00000514305 SRRM2Q9UQ35 2752 aaKnown RBP12.97□□□□□ -0.33
USP53-208ENST00000514305 C2orf82Q6UX34 121 aa12.97□□□□□ -0.33
USP53-208ENST00000514305 FAM30AQ9NZY2 134 aa12.97□□□□□ -0.33
USP53-208ENST00000514305 LINC00587B1AMM8 73 aa12.96□□□□□ -0.33
USP53-208ENST00000514305 HSBP1L1C9JCN9 74 aa12.95□□□□□ -0.34
USP53-208ENST00000514305 E9PLD3 99 aa12.95□□□□□ -0.34
USP53-208ENST00000514305 SCGB1D1O95968 90 aa12.95□□□□□ -0.34
USP53-208ENST00000514305 LGALS3P17931 250 aaKnown RBP12.95□□□□□ -0.34
USP53-208ENST00000514305 SDIM1Q6ZPB5 146 aa12.95□□□□□ -0.34
USP53-208ENST00000514305 MYMXA0A1B0GTQ4 84 aa12.94□□□□□ -0.34
USP53-208ENST00000514305 TLX1NBP0CAT3 122 aa12.94□□□□□ -0.34
USP53-208ENST00000514305 NMUP48645 174 aa12.94□□□□□ -0.34
USP53-208ENST00000514305 HERV-K104P63124 156 aa12.94□□□□□ -0.34
USP53-208ENST00000514305 DPH3Q96FX2 82 aa12.94□□□□□ -0.34
USP53-208ENST00000514305 C6orf48Q9UBA6 75 aa12.94□□□□□ -0.34
USP53-208ENST00000514305 J3QQQ9 107 aa12.93□□□□□ -0.34
USP53-208ENST00000514305 LINC01620Q4KN68 170 aa12.93□□□□□ -0.34
USP53-208ENST00000514305 C10orf25Q5T742 122 aa12.93□□□□□ -0.34
USP53-208ENST00000514305 PLA2G1BP04054 148 aaKnown RBP12.92□□□□□ -0.34
USP53-208ENST00000514305 HERC1Q15751 4861 aa12.92□□□□□ -0.34
USP53-208ENST00000514305 Q6ZSA8 131 aa12.92□□□□□ -0.34
USP53-208ENST00000514305 NDUFA12Q9UI09 145 aa12.92□□□□□ -0.34
USP53-208ENST00000514305 FLG2Q5D862 2391 aaPredicted RBP12.92□□□□□ -0.34
USP53-208ENST00000514305 NDUFC2-KCTD14E9PQ53 114 aa12.91□□□□□ -0.34
USP53-208ENST00000514305 RPL18AQ02543 176 aaKnown RBP12.91□□□□□ -0.34
USP53-208ENST00000514305 COX17Q14061 63 aa12.91□□□□□ -0.34
USP53-208ENST00000514305 GAGE2BQ13066 116 aa12.89□□□□□ -0.35
USP53-208ENST00000514305 STPG4Q8N801 248 aa12.89□□□□□ -0.35
USP53-208ENST00000514305 MYCBP2O75592 4640 aa12.88□□□□□ -0.35
USP53-208ENST00000514305 ZNF625Q96I27 306 aaPredicted RBP12.88□□□□□ -0.35
USP53-208ENST00000514305 IGKV2-24A0A0C4DH68 120 aa12.87□□□□□ -0.35
USP53-208ENST00000514305 PTTG1IPP53801 180 aa12.87□□□□□ -0.35
USP53-208ENST00000514305 ATOH7Q8N100 152 aa12.87□□□□□ -0.35
USP53-208ENST00000514305 ERG28Q9UKR5 140 aa12.87□□□□□ -0.35
USP53-208ENST00000514305 DNAH8Q96JB1 4490 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 147.3 ms