RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PKIGQ9Y2B9 76 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 DMBT1Q9UGM3 2413 aaPredicted RBP2.19□□□□□ -2.06
NUP54-212ENST00000513248 TRAV13-1A0A0B4J241 112 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 IGHV1-58A0A0C4DH39 117 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 IGKV2-24A0A0C4DH68 120 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 TCAPO15273 167 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 CCL25O15444 150 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 NDUFS6O75380 124 aaKnown RBP2.19□□□□□ -2.06
NUP54-212ENST00000513248 APOMO95445 188 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 HBBP68871 147 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 MRPL51Q4U2R6 128 aaKnown RBP2.19□□□□□ -2.06
NUP54-212ENST00000513248 MTURNQ8N3F0 131 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 ZNF664Q8N3J9 261 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 C9orf163Q8N9P6 203 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 CIRBP-AS1Q8TBR5 109 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 SMDT1Q9H4I9 107 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 V9GYV3 84 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 RNF213Q63HN8 5207 aa2.19□□□□□ -2.06
NUP54-212ENST00000513248 TRBV6-5A0A0K0K1A5 114 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 TRBV27A0A0K0K1C4 114 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 LOC389332A0A1B0GUA5 103 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 LINC00959A0A1B0GUT2 108 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 SMIM27A0A1W2PRY6 76 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 LINC00862A6NCI5 91 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 C1orf196B1AJZ1 125 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 C9JQL5 133 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 D6R8Y8 96 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 COX7A2LO14548 114 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 MT-ND4LP03901 98 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 MAJINQ3KP22 176 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 RNASE13Q5GAN3 156 aaKnown RBP2.18□□□□□ -2.06
NUP54-212ENST00000513248 FAM104BQ5XKR9 115 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 Q6ZN92 141 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 TMEM136Q6ZRR5 245 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 Q6ZSA8 131 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 CARD19Q96LW7 228 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 C20orf78Q9BR46 151 aa2.18□□□□□ -2.06
NUP54-212ENST00000513248 PPBPP02775 128 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 ESDP10768 282 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 S100PP25815 95 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 IFI27P40305 119 aaPredicted RBP2.17□□□□□ -2.06
NUP54-212ENST00000513248 POLR2KP53803 58 aaKnown RBP2.17□□□□□ -2.06
NUP54-212ENST00000513248 CNBPP62633 177 aaKnown RBP2.17□□□□□ -2.06
NUP54-212ENST00000513248 COX6A2Q02221 97 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 RPL18AQ02543 176 aaKnown RBP2.17□□□□□ -2.06
NUP54-212ENST00000513248 SYCNQ0VAF6 134 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 SDIM1Q6ZPB5 146 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 Q6ZUT4 128 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 ATP5L2Q7Z4Y8 100 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 C5orf38Q86SI9 138 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 MRPL52Q86TS9 123 aaKnown RBP2.17□□□□□ -2.06
NUP54-212ENST00000513248 ORMDL3Q8N138 153 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 C15orf56Q8N910 161 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 LINC00526Q96FQ7 95 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 PRELID3AQ96N28 172 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 CAMK2N2Q96S95 79 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 C2orf88Q9BSF0 95 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 SMIM2Q9BVW6 85 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 MAP1LC3AQ9H492 121 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 CDC42SE2Q9NRR3 84 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 LINC00474Q9P2X8 69 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 UBE2D4Q9Y2X8 147 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 DNAH11Q96DT5 4516 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 MUC2Q02817 5179 aa2.17□□□□□ -2.06
NUP54-212ENST00000513248 HSPG2P98160 4391 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 IGLV4-69A0A075B6H9 119 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 GVQW2A0A096LPI5 108 aaPredicted RBP2.16□□□□□ -2.06
NUP54-212ENST00000513248 TGIF2-C20orf24A0A0A6YYL0 155 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 LOC107984640A0A0U1RRK4 108 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 SPRR5A0A1B0GTR4 108 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 NPYP01303 97 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 G0S2P27469 103 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 RPL39P62891 51 aaKnown RBP2.16□□□□□ -2.06
NUP54-212ENST00000513248 SPAG11BQ08648 103 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 KRTAP26-1Q6PEX3 210 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 PP632Q6XCG6 107 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 TEX43Q6ZNM6 134 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 ORAOV1Q8WV07 137 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 SPANXA1Q9NS26 97 aa2.16□□□□□ -2.06
NUP54-212ENST00000513248 FLG2Q5D862 2391 aaPredicted RBP2.16□□□□□ -2.06
NUP54-212ENST00000513248 HMCN2Q8NDA2 5059 aa2.15□□□□□ -2.06
NUP54-212ENST00000513248 PKHD1P08F94 4074 aa2.15□□□□□ -2.06
NUP54-212ENST00000513248 TRBV24-1A0A075B6N3 115 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 A0A096LNI7 61 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 A0A1B0GXF2 115 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 NDUFA1O15239 70 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 OXTP01178 125 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 ORMDL2Q53FV1 153 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 CLLU1Q5K131 121 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 Q6ZRU5 148 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 COMMD7Q86VX2 200 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 SPACA4Q8TDM5 124 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 TMEM141Q96I45 108 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 PACRGQ96M98 296 aaPredicted RBP2.15□□□□□ -2.07
NUP54-212ENST00000513248 IMMP2LQ96T52 175 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 TIMM21Q9BVV7 248 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 VCX2Q9H322 139 aa2.15□□□□□ -2.07
NUP54-212ENST00000513248 GEMIN7Q9H840 131 aaKnown RBP2.15□□□□□ -2.07
NUP54-212ENST00000513248 NXT2Q9NPJ8 142 aaKnown RBP2.15□□□□□ -2.07
NUP54-212ENST00000513248 SMCO4Q9NRQ5 59 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms