RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 Q8IZM0 81 aa12.43□□□□□ -0.42
CCHCR1-228ENST00000509552 SMIM11BQ8TCY0 68 aa12.43□□□□□ -0.42
CCHCR1-228ENST00000509552 FN1P02751 2386 aaKnown RBP12.42□□□□□ -0.42
CCHCR1-228ENST00000509552 TTC32Q5I0X7 151 aa12.42□□□□□ -0.42
CCHCR1-228ENST00000509552 CLPSL2Q6UWE3 100 aa12.42□□□□□ -0.42
CCHCR1-228ENST00000509552 LINC01561Q8N1V8 128 aa12.42□□□□□ -0.42
CCHCR1-228ENST00000509552 FASNP49327 2511 aaKnown RBP12.42□□□□□ -0.42
CCHCR1-228ENST00000509552 DEFB135Q30KP9 77 aa12.42□□□□□ -0.42
CCHCR1-228ENST00000509552 APOC4P55056 127 aa12.41□□□□□ -0.42
CCHCR1-228ENST00000509552 H0YGX0 51 aa12.4□□□□□ -0.42
CCHCR1-228ENST00000509552 DNAL4O96015 105 aa12.4□□□□□ -0.42
CCHCR1-228ENST00000509552 GCN1Q92616 2671 aaKnown RBP12.4□□□□□ -0.42
CCHCR1-228ENST00000509552 Q9HAA7 133 aa12.39□□□□□ -0.43
CCHCR1-228ENST00000509552 OR13C6PQ8NH95 151 aa12.39□□□□□ -0.43
CCHCR1-228ENST00000509552 SPATA3Q8NHX4 192 aa12.39□□□□□ -0.43
CCHCR1-228ENST00000509552 TRAV26-1A0A087WT03 109 aa12.38□□□□□ -0.43
CCHCR1-228ENST00000509552 DEFB4AO15263 64 aa12.38□□□□□ -0.43
CCHCR1-228ENST00000509552 MALP21145 153 aa12.38□□□□□ -0.43
CCHCR1-228ENST00000509552 NDUFV3P56181 108 aaKnown RBP12.38□□□□□ -0.43
CCHCR1-228ENST00000509552 DAD1P61803 113 aa12.38□□□□□ -0.43
CCHCR1-228ENST00000509552 LINC00269Q8N2A0 174 aa12.38□□□□□ -0.43
CCHCR1-228ENST00000509552 IGHV4-28A0A0C4DH34 117 aa12.37□□□□□ -0.43
CCHCR1-228ENST00000509552 INAFM2P0DMQ5 153 aa12.37□□□□□ -0.43
CCHCR1-228ENST00000509552 CD164L2Q6UWJ8 174 aa12.37□□□□□ -0.43
CCHCR1-228ENST00000509552 INAFM1C9JVW0 142 aa12.36□□□□□ -0.43
CCHCR1-228ENST00000509552 A0A087WYN8 130 aa12.36□□□□□ -0.43
CCHCR1-228ENST00000509552 CFAP161Q6P656 301 aa12.36□□□□□ -0.43
CCHCR1-228ENST00000509552 C22orf24Q9Y442 160 aa12.36□□□□□ -0.43
CCHCR1-228ENST00000509552 ANGP03950 147 aaKnown RBP12.35□□□□□ -0.43
CCHCR1-228ENST00000509552 NBEAL2Q6ZNJ1 2754 aa12.35□□□□□ -0.43
CCHCR1-228ENST00000509552 ATP5G1P05496 136 aa12.34□□□□□ -0.43
CCHCR1-228ENST00000509552 CHCHD10Q8WYQ3 142 aaPredicted RBP12.34□□□□□ -0.43
CCHCR1-228ENST00000509552 KMT2BQ9UMN6 2715 aaPredicted RBP12.34□□□□□ -0.43
CCHCR1-228ENST00000509552 CXCL5P42830 114 aa12.34□□□□□ -0.43
CCHCR1-228ENST00000509552 REG3AQ06141 175 aa12.33□□□□□ -0.44
CCHCR1-228ENST00000509552 MIFP14174 115 aa12.33□□□□□ -0.44
CCHCR1-228ENST00000509552 NHLRC4P0CG21 123 aaPredicted RBP12.32□□□□□ -0.44
CCHCR1-228ENST00000509552 TRBV7-7A0A0K0K1E9 115 aa12.32□□□□□ -0.44
CCHCR1-228ENST00000509552 COX17Q14061 63 aa12.32□□□□□ -0.44
CCHCR1-228ENST00000509552 IGLV10-54A0A075B6I4 117 aa12.31□□□□□ -0.44
CCHCR1-228ENST00000509552 KIAA0087Q14695 138 aa12.31□□□□□ -0.44
CCHCR1-228ENST00000509552 LECT2O14960 151 aa12.31□□□□□ -0.44
CCHCR1-228ENST00000509552 VWFP04275 2813 aa12.3□□□□□ -0.44
CCHCR1-228ENST00000509552 Q8NAQ8 132 aa12.3□□□□□ -0.44
CCHCR1-228ENST00000509552 CELA1Q9UNI1 258 aa12.3□□□□□ -0.44
CCHCR1-228ENST00000509552 SPART-AS1P0CW21 52 aa12.29□□□□□ -0.44
CCHCR1-228ENST00000509552 LINC00643Q86TS7 51 aa12.29□□□□□ -0.44
CCHCR1-228ENST00000509552 GAGE2AQ6NT46 116 aa12.29□□□□□ -0.44
CCHCR1-228ENST00000509552 Q8N3U1 123 aa12.29□□□□□ -0.44
CCHCR1-228ENST00000509552 NDUFC2O95298 119 aa12.28□□□□□ -0.44
CCHCR1-228ENST00000509552 IMUPQ9GZP8 106 aa12.28□□□□□ -0.44
CCHCR1-228ENST00000509552 HTN3P15516 51 aa12.27□□□□□ -0.44
CCHCR1-228ENST00000509552 SMCR5Q8TEV8 140 aa12.27□□□□□ -0.45
CCHCR1-228ENST00000509552 LELP1Q5T871 98 aa12.26□□□□□ -0.45
CCHCR1-228ENST00000509552 HECTD1Q9ULT8 2610 aa12.26□□□□□ -0.45
CCHCR1-228ENST00000509552 NOTCH2Q04721 2471 aa12.25□□□□□ -0.45
CCHCR1-228ENST00000509552 SDIM1Q6ZPB5 146 aa12.25□□□□□ -0.45
CCHCR1-228ENST00000509552 TMEM126AQ9H061 195 aa12.25□□□□□ -0.45
CCHCR1-228ENST00000509552 ORMDL1Q9P0S3 153 aa12.24□□□□□ -0.45
CCHCR1-228ENST00000509552 PRR3P79522 188 aaKnown RBP12.23□□□□□ -0.45
CCHCR1-228ENST00000509552 IGHV4-30-4P0DP06 118 aa12.23□□□□□ -0.45
CCHCR1-228ENST00000509552 A0A1B0GX51 115 aa12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 C9orf116Q5BN46 136 aaPredicted RBP12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 OBSCN-AS1Q96MR7 158 aa12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 C14orf132Q9NPU4 83 aa12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 KLK5Q9Y337 293 aaPredicted RBP12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 NSD1Q96L73 2696 aaPredicted RBP12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 SLPIP03973 132 aa12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 WFDC9Q8NEX5 89 aa12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 OTOGQ6ZRI0 2925 aa12.22□□□□□ -0.45
CCHCR1-228ENST00000509552 NANOS2P60321 138 aaKnown RBP12.21□□□□□ -0.45
CCHCR1-228ENST00000509552 SPAG11BQ08648 103 aa12.21□□□□□ -0.46
CCHCR1-228ENST00000509552 C9orf129Q5T035 196 aaKnown RBP12.21□□□□□ -0.46
CCHCR1-228ENST00000509552 MUC7Q8TAX7 377 aa12.2□□□□□ -0.46
CCHCR1-228ENST00000509552 TENM1Q9UKZ4 2725 aa12.2□□□□□ -0.46
CCHCR1-228ENST00000509552 B5MCH6 92 aa12.19□□□□□ -0.46
CCHCR1-228ENST00000509552 CCDC179H3BU77 68 aa12.19□□□□□ -0.46
CCHCR1-228ENST00000509552 KLK12Q9UKR0 248 aa12.19□□□□□ -0.46
CCHCR1-228ENST00000509552 NCR3O14931 201 aa12.19□□□□□ -0.46
CCHCR1-228ENST00000509552 FAM236AA0A1B0GUQ0 79 aa12.18□□□□□ -0.46
CCHCR1-228ENST00000509552 FAM236BA0A1B0GV22 79 aa12.18□□□□□ -0.46
CCHCR1-228ENST00000509552 WIPF1O43516 503 aa12.18□□□□□ -0.46
CCHCR1-228ENST00000509552 Q8N814 137 aa12.18□□□□□ -0.46
CCHCR1-228ENST00000509552 LINC00167Q96N53 147 aa12.18□□□□□ -0.46
CCHCR1-228ENST00000509552 PRR34Q9NV39 138 aa12.18□□□□□ -0.46
CCHCR1-228ENST00000509552 S100A7L2Q5SY68 101 aa12.17□□□□□ -0.46
CCHCR1-228ENST00000509552 UNQ6190/PRO20217Q6UXQ8 127 aa12.17□□□□□ -0.46
CCHCR1-228ENST00000509552 C6orf223Q8N319 242 aa12.17□□□□□ -0.46
CCHCR1-228ENST00000509552 CYSRT1A8MQ03 144 aa12.15□□□□□ -0.46
CCHCR1-228ENST00000509552 C10orf25Q5T742 122 aa12.15□□□□□ -0.46
CCHCR1-228ENST00000509552 A0A0J9YWU9 116 aa12.15□□□□□ -0.46
CCHCR1-228ENST00000509552 TMEM256-PLSCR3K7ERE1 68 aa12.15□□□□□ -0.46
CCHCR1-228ENST00000509552 LYPD5Q6UWN5 251 aa12.15□□□□□ -0.46
CCHCR1-228ENST00000509552 ATRQ13535 2644 aa12.14□□□□□ -0.47
CCHCR1-228ENST00000509552 ENHOQ6UWT2 76 aa12.14□□□□□ -0.47
CCHCR1-228ENST00000509552 JMJD7-PLA2G4BH0Y9G9 81 aa12.14□□□□□ -0.47
CCHCR1-228ENST00000509552 C6orf99Q4VX62 202 aa12.14□□□□□ -0.47
CCHCR1-228ENST00000509552 LINC00526Q96FQ7 95 aa12.13□□□□□ -0.47
CCHCR1-228ENST00000509552 TEP1Q99973 2627 aaKnown RBP12.13□□□□□ -0.47
CCHCR1-228ENST00000509552 Q8NDZ9 215 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms