RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 HERC1Q15751 4861 aa11.75□□□□□ -0.53
SQSTM1-209ENST00000504627 TMEM223A0PJW6 202 aa11.75□□□□□ -0.53
SQSTM1-209ENST00000504627 XCL1P47992 114 aa11.75□□□□□ -0.53
SQSTM1-209ENST00000504627 MAJINQ3KP22 176 aa11.75□□□□□ -0.53
SQSTM1-209ENST00000504627 SPATA45Q537H7 98 aa11.75□□□□□ -0.53
SQSTM1-209ENST00000504627 IGLV10-54A0A075B6I4 117 aa11.74□□□□□ -0.53
SQSTM1-209ENST00000504627 PLA2G1BP04054 148 aaKnown RBP11.74□□□□□ -0.53
SQSTM1-209ENST00000504627 ANKRD39Q53RE8 183 aa11.74□□□□□ -0.53
SQSTM1-209ENST00000504627 LINC01561Q8N1V8 128 aa11.74□□□□□ -0.53
SQSTM1-209ENST00000504627 STPG4Q8N801 248 aa11.74□□□□□ -0.53
SQSTM1-209ENST00000504627 A0A087WZ39 114 aa11.73□□□□□ -0.53
SQSTM1-209ENST00000504627 E9PLD3 99 aa11.73□□□□□ -0.53
SQSTM1-209ENST00000504627 LINC00528Q8N1L1 170 aa11.73□□□□□ -0.53
SQSTM1-209ENST00000504627 DMBT1Q9UGM3 2413 aaPredicted RBP11.73□□□□□ -0.53
SQSTM1-209ENST00000504627 FLG2Q5D862 2391 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-209ENST00000504627 FOXI1Q12951 378 aa11.72□□□□□ -0.53
SQSTM1-209ENST00000504627 MYCBP2O75592 4640 aa11.72□□□□□ -0.53
SQSTM1-209ENST00000504627 SMIM1B2RUZ4 78 aa11.71□□□□□ -0.53
SQSTM1-209ENST00000504627 USP17L23D6RBM5 183 aa11.71□□□□□ -0.53
SQSTM1-209ENST00000504627 COX7A2LO14548 114 aa11.71□□□□□ -0.53
SQSTM1-209ENST00000504627 SCXQ7RTU7 201 aa11.71□□□□□ -0.53
SQSTM1-209ENST00000504627 IGHV1-58A0A0C4DH39 117 aa11.7□□□□□ -0.54
SQSTM1-209ENST00000504627 IGLV5-39A0A0G2JS06 123 aa11.7□□□□□ -0.54
SQSTM1-209ENST00000504627 GAGE12HA6NDE8 117 aa11.7□□□□□ -0.54
SQSTM1-209ENST00000504627 SPINK8P0C7L1 97 aa11.7□□□□□ -0.54
SQSTM1-209ENST00000504627 KRTAP26-1Q6PEX3 210 aa11.69□□□□□ -0.54
SQSTM1-209ENST00000504627 PLEKHB2Q96CS7 222 aa11.69□□□□□ -0.54
SQSTM1-209ENST00000504627 LEPROTO15243 131 aa11.68□□□□□ -0.54
SQSTM1-209ENST00000504627 C5orf38Q86SI9 138 aa11.68□□□□□ -0.54
SQSTM1-209ENST00000504627 IGKV2D-26A0A0A0MRZ7 120 aa11.67□□□□□ -0.54
SQSTM1-209ENST00000504627 NMUP48645 174 aa11.67□□□□□ -0.54
SQSTM1-209ENST00000504627 IGHV3-64A0A075B6Q5 118 aa11.66□□□□□ -0.54
SQSTM1-209ENST00000504627 APOMO95445 188 aa11.66□□□□□ -0.54
SQSTM1-209ENST00000504627 MALP21145 153 aa11.66□□□□□ -0.54
SQSTM1-209ENST00000504627 CIRBP-AS1Q8TBR5 109 aa11.66□□□□□ -0.54
SQSTM1-209ENST00000504627 J3QQQ9 107 aa11.65□□□□□ -0.54
SQSTM1-209ENST00000504627 COX8AP10176 69 aa11.65□□□□□ -0.54
SQSTM1-209ENST00000504627 LGALS3P17931 250 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-209ENST00000504627 TSTD3H0UI37 97 aa11.64□□□□□ -0.55
SQSTM1-209ENST00000504627 J3QL48 77 aa11.64□□□□□ -0.55
SQSTM1-209ENST00000504627 TSPEAR-AS2P59090 65 aa11.64□□□□□ -0.55
SQSTM1-209ENST00000504627 DLEU1O43261 78 aa11.62□□□□□ -0.55
SQSTM1-209ENST00000504627 PCP2Q8IVA1 136 aa11.62□□□□□ -0.55
SQSTM1-209ENST00000504627 Q8IZM0 81 aa11.62□□□□□ -0.55
SQSTM1-209ENST00000504627 COX7B2Q8TF08 81 aa11.62□□□□□ -0.55
SQSTM1-209ENST00000504627 ORAOV1Q8WV07 137 aa11.62□□□□□ -0.55
SQSTM1-209ENST00000504627 UQCR10Q9UDW1 63 aa11.62□□□□□ -0.55
SQSTM1-209ENST00000504627 SLC25A34Q6PIV7 304 aa11.61□□□□□ -0.55
SQSTM1-209ENST00000504627 SFTA2Q6UW10 78 aa11.61□□□□□ -0.55
SQSTM1-209ENST00000504627 BOD1L2Q8IYS8 172 aa11.61□□□□□ -0.55
SQSTM1-209ENST00000504627 C9orf163Q8N9P6 203 aa11.61□□□□□ -0.55
SQSTM1-209ENST00000504627 C14orf144Q96I85 54 aa11.61□□□□□ -0.55
SQSTM1-209ENST00000504627 PRO1933Q9H354 126 aa11.61□□□□□ -0.55
SQSTM1-209ENST00000504627 ZNF815PA8K554 130 aa11.6□□□□□ -0.55
SQSTM1-209ENST00000504627 MYMXA0A1B0GTQ4 84 aa11.59□□□□□ -0.55
SQSTM1-209ENST00000504627 NDUFA1O15239 70 aa11.59□□□□□ -0.55
SQSTM1-209ENST00000504627 PRSS2P07478 247 aa11.59□□□□□ -0.55
SQSTM1-209ENST00000504627 CXCL5P42830 114 aa11.59□□□□□ -0.55
SQSTM1-209ENST00000504627 SPAG11BQ08648 103 aa11.59□□□□□ -0.55
SQSTM1-209ENST00000504627 CFAP161Q6P656 301 aa11.59□□□□□ -0.55
SQSTM1-209ENST00000504627 TOMM7Q9P0U1 55 aa11.59□□□□□ -0.55
SQSTM1-209ENST00000504627 NDUFA12Q9UI09 145 aa11.59□□□□□ -0.55
SQSTM1-209ENST00000504627 C15orf56Q8N910 161 aa11.58□□□□□ -0.56
SQSTM1-209ENST00000504627 TTTY13Q9BZ97 58 aa11.58□□□□□ -0.56
SQSTM1-209ENST00000504627 GVQW2A0A096LPI5 108 aaPredicted RBP11.57□□□□□ -0.56
SQSTM1-209ENST00000504627 KIAA0087Q14695 138 aa11.57□□□□□ -0.56
SQSTM1-209ENST00000504627 MIEN1Q9BRT3 115 aa11.57□□□□□ -0.56
SQSTM1-209ENST00000504627 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-209ENST00000504627 ZNF625Q96I27 306 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-209ENST00000504627 CNBPP62633 177 aaKnown RBP11.55□□□□□ -0.56
SQSTM1-209ENST00000504627 HERV-K104P63124 156 aa11.55□□□□□ -0.56
SQSTM1-209ENST00000504627 SDIM1Q6ZPB5 146 aa11.55□□□□□ -0.56
SQSTM1-209ENST00000504627 KRTAP29-1A8MX34 341 aaPredicted RBP11.54□□□□□ -0.56
SQSTM1-209ENST00000504627 F8WDY8 70 aa11.54□□□□□ -0.56
SQSTM1-209ENST00000504627 RPL37AP61513 92 aaKnown RBP11.54□□□□□ -0.56
SQSTM1-209ENST00000504627 C6orf226Q5I0X4 101 aa11.54□□□□□ -0.56
SQSTM1-209ENST00000504627 DPH3Q96FX2 82 aa11.54□□□□□ -0.56
SQSTM1-209ENST00000504627 TP73-AS1Q9UF72 201 aa11.54□□□□□ -0.56
SQSTM1-209ENST00000504627 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.54□□□□□ -0.56
SQSTM1-209ENST00000504627 ZNF561-AS1K7EIQ3 104 aa11.53□□□□□ -0.56
SQSTM1-209ENST00000504627 HNRNPA3P51991 378 aaKnown RBP11.53□□□□□ -0.56
SQSTM1-209ENST00000504627 SCGB1D4Q6XE38 83 aa11.53□□□□□ -0.56
SQSTM1-209ENST00000504627 C2orf48Q96LS8 159 aa11.53□□□□□ -0.56
SQSTM1-209ENST00000504627 KRTAP10-4P60372 401 aaPredicted RBP11.52□□□□□ -0.57
SQSTM1-209ENST00000504627 CKS1BP61024 79 aa11.52□□□□□ -0.57
SQSTM1-209ENST00000504627 C2orf91Q6ZV80 131 aa11.52□□□□□ -0.57
SQSTM1-209ENST00000504627 HIGD1BQ9P298 99 aa11.52□□□□□ -0.57
SQSTM1-209ENST00000504627 A0A0J9YXY3 114 aa11.51□□□□□ -0.57
SQSTM1-209ENST00000504627 HIGD2BQ4VC39 106 aa11.51□□□□□ -0.57
SQSTM1-209ENST00000504627 PANO1I0J062 215 aa11.5□□□□□ -0.57
SQSTM1-209ENST00000504627 DDTP30046 118 aa11.5□□□□□ -0.57
SQSTM1-209ENST00000504627 TIMM17BO60830 172 aa11.49□□□□□ -0.57
SQSTM1-209ENST00000504627 SLPIP03973 132 aa11.49□□□□□ -0.57
SQSTM1-209ENST00000504627 LINC00587B1AMM8 73 aa11.48□□□□□ -0.57
SQSTM1-209ENST00000504627 TMEM238C9JI98 176 aa11.48□□□□□ -0.57
SQSTM1-209ENST00000504627 C2orf82Q6UX34 121 aa11.48□□□□□ -0.57
SQSTM1-209ENST00000504627 LINC00526Q96FQ7 95 aa11.47□□□□□ -0.57
SQSTM1-209ENST00000504627 CAMK2N2Q96S95 79 aa11.47□□□□□ -0.57
SQSTM1-209ENST00000504627 LRP1Q07954 4544 aaKnown RBP11.47□□□□□ -0.57
SQSTM1-209ENST00000504627 TRBV30A0A0K0K1B3 111 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms