RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 C16orf95Q9H693 158 aa11.34□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 DEFB121Q5J5C9 76 aa11.33□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 FAM236AA0A1B0GUQ0 79 aa11.33□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 FAM236BA0A1B0GV22 79 aa11.33□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 TRBV6-4A0A1B0GX49 114 aa11.33□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 TRGV2A0A075B6R0 118 aa11.32□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 UBE2L6O14933 153 aa11.32□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 DNHD1Q96M86 4753 aa11.32□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 COX7A2LO14548 114 aa11.31□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 COPS9Q8WXC6 57 aa11.31□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 MDFIQ99750 246 aa11.31□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 ANK2Q01484 3957 aa11.3□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 CRYGAP11844 174 aa11.3□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 FHL2Q14192 279 aa11.29□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 SPATA3Q8NHX4 192 aa11.29□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 ACYP1P07311 99 aa11.29□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 GAGE2AQ6NT46 116 aa11.29□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 KIR2DL5BQ8NHK3 375 aa11.29□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 CMYA5Q8N3K9 4069 aa11.29□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 TRGV4A0A0C4DH28 118 aa11.28□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 IGLV4-60A0A075B6I1 120 aa11.28□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 COX7CP15954 63 aa11.28□□□□□ -0.6
MSH5-SAPCD1-208ENST00000498473 NOTCH1P46531 2555 aa11.27□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 F8WDY8 70 aa11.27□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 COX7B2Q8TF08 81 aa11.27□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 TRBV6-8A0A0A6YYG3 113 aa11.26□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 KLK5Q9Y337 293 aaPredicted RBP11.25□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 IGHV3OR16-9A0A0B4J2B5 98 aa11.24□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 IGKV3OR2-268A0A0C4DH90 116 aa11.24□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 FAM218AQ96MZ4 157 aa11.24□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 MIR7-3HGQ8N6C7 128 aa11.23□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 TRACP01848 142 aa11.23□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 CXCL5P42830 114 aa11.23□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 TMEM258P61165 79 aa11.23□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 TOMM7Q9P0U1 55 aa11.23□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 MGAM2Q2M2H8 2515 aa11.22□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 IGKV2-28A0A075B6P5 120 aa11.22□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 IGKV2D-28P01615 120 aa11.22□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 LINC00643Q86TS7 51 aa11.22□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 C22orf24Q9Y442 160 aa11.22□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 NBEAL1Q6ZS30 2694 aa11.22□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 LINC00337Q8N6G1 96 aa11.21□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 DPH3Q96FX2 82 aa11.21□□□□□ -0.61
MSH5-SAPCD1-208ENST00000498473 A0A087WZ39 114 aa11.2□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 RPL28P46779 137 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 FAM222AQ5U5X8 452 aa11.2□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 C2orf48Q96LS8 159 aa11.2□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 TRAV13-2A0A0B4J235 113 aa11.2□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 PF4P02776 101 aa11.2□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 LINC00612Q8N6U2 182 aa11.2□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 SND1-IT1Q9HBX3 110 aa11.19□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 BAALC-AS2P0C853 105 aa11.18□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 DEFB130BP0DP73 79 aa11.18□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 DEFB130AP0DP74 79 aa11.18□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 LINC00158P58513 81 aa11.18□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 C5orf38Q86SI9 138 aa11.18□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 LINC00959A0A1B0GUT2 108 aa11.17□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 ATOX1O00244 68 aa11.17□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 CRPP02741 224 aa11.17□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 CCL18P55774 89 aa11.17□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 IBA57-AS1B1ANH7 110 aa11.16□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 Q5XG85 94 aa11.16□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 SDIM1Q6ZPB5 146 aa11.16□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 C4orf26Q17RF5 130 aa11.16□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 HIST1H4AP62805 103 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-208ENST00000498473 GYPEP15421 78 aa11.15□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 SMIM11BQ8TCY0 68 aa11.15□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 X6R8D5 127 aa11.15□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 HRCT1Q6UXD1 115 aa11.14□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 Q9HAA7 133 aa11.14□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 LINC00482Q8N8I6 264 aa11.13□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 PFN2P35080 140 aa11.13□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 PRO0628Q9UI54 55 aa11.13□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 hADV29S1A0JD25 119 aa11.12□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 MALP21145 153 aa11.12□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 SMCR5Q8TEV8 140 aa11.12□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 A0A1B0GUV1 79 aa11.12□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 A0A087WYN8 130 aa11.11□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 NBEAL2Q6ZNJ1 2754 aa11.1□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 XCL1P47992 114 aa11.1□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 OXTP01178 125 aa11.09□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 C6orf226Q5I0X4 101 aa11.09□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 C11orf68Q9H3H3 251 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 PRO0255Q9UI72 69 aa11.09□□□□□ -0.63
MSH5-SAPCD1-208ENST00000498473 A0A096LPF7 62 aa11.08□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 SS18Q15532 418 aa11.08□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 CLPSL2Q6UWE3 100 aa11.08□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 H0YGX0 51 aa11.07□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 PAX4O43316 350 aa11.07□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 Q8IZM0 81 aa11.07□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 C9orf129Q5T035 196 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 OXLD1Q5BKU9 147 aa11.05□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 LINC01561Q8N1V8 128 aa11.05□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 SERP2Q8N6R1 65 aa11.05□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 UPK3BQ9BT76 320 aa11.05□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 INAFM2P0DMQ5 153 aa11.05□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 RPL18AQ02543 176 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 DSCR8Q96T75 97 aa11.04□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 CYSTM1Q9H1C7 97 aa11.04□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 KIAA0087Q14695 138 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms