RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 RTTNQ86VV8 2226 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 TLN2Q9Y4G6 2542 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 KIAA1549Q9HCM3 1950 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 APCP25054 2843 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 IGKV1D-37A0A075B6S9 117 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 UBE2L5PA0A1B0GUS4 154 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 BCE1O60756 84 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 HMGN2P05204 90 aaKnown RBP2.64□□□□□ -1.99
SF3B1-212ENST00000496458 LGALS3P17931 250 aaKnown RBP2.64□□□□□ -1.99
SF3B1-212ENST00000496458 RNASE4P34096 147 aaKnown RBP2.64□□□□□ -1.99
SF3B1-212ENST00000496458 ATP5EP56381 51 aaPredicted RBP2.64□□□□□ -1.99
SF3B1-212ENST00000496458 ZNF56Q15929 161 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 FDCSPQ8NFU4 85 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 SMCR5Q8TEV8 140 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 DSCR8Q96T75 97 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 NPCDR1Q9BY65 106 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 HHLA3Q9XRX5 114 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 PLCE1Q9P212 2302 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 NCOA6Q14686 2063 aaPredicted RBP2.64□□□□□ -1.99
SF3B1-212ENST00000496458 CADP27708 2225 aa2.64□□□□□ -1.99
SF3B1-212ENST00000496458 FREM1Q5H8C1 2179 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 IGKV3D-11A0A0A0MRZ8 115 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 IGHV1-58A0A0C4DH39 117 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 LOC107984156A0A0G2JMH3 177 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 A0A1B0GWA3 101 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 LINC01546A6NGU7 62 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 H3BQ85 93 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 SPINK4O60575 86 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 HBDP02042 147 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 IGLV7-43P04211 117 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 IGKV1-16P04430 117 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 ATXN8Q156A1 80 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 MIAQ16674 131 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 TMEM155Q4W5P6 130 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 MIR17HGQ75NE6 70 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 PHF5AQ7RTV0 110 aaKnown RBP2.63□□□□□ -1.99
SF3B1-212ENST00000496458 NDUFA11Q86Y39 141 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 ARL17AQ8IVW1 177 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 ST20-AS1Q8NBB2 130 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 DYNLRB1Q9NP97 96 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 SETD2Q9BYW2 2564 aaPredicted RBP2.63□□□□□ -1.99
SF3B1-212ENST00000496458 ACANP16112 2415 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 TANC2Q9HCD6 1990 aa2.63□□□□□ -1.99
SF3B1-212ENST00000496458 DOCK11Q5JSL3 2073 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 HEATR1Q9H583 2144 aaKnown RBP2.62□□□□□ -1.99
SF3B1-212ENST00000496458 LINC01549A6NIU2 74 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 H3BVH4 76 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 ARL14EPLP0DKL9 152 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 PCBD1P61457 104 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 C10orf105Q8TEF2 133 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 BRK1Q8WUW1 75 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 SCGB3A1Q96QR1 104 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 ITPR3Q14573 2671 aa2.62□□□□□ -1.99
SF3B1-212ENST00000496458 IGKV2D-26A0A0A0MRZ7 120 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 IGHV3-15A0A0B4J1V0 119 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 IGHV3-73A0A0B4J1V6 119 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 HIGD1CA8MV81 97 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 IGHV3-53P01767 116 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 CD24P25063 80 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 XCL1P47992 114 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 FXYD4P59646 89 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 KRTAP12-3P60328 96 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 FXYD3Q14802 87 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 KISS1Q15726 138 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 SPANXN5Q5MJ07 72 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 LINC00305Q7Z4B0 112 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 WFDC11Q8NEX6 87 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 KLF14Q8TD94 323 aaPredicted RBP2.61□□□□□ -1.99
SF3B1-212ENST00000496458 NAV3Q8IVL0 2385 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 HRNRQ86YZ3 2850 aaPredicted RBP2.61□□□□□ -1.99
SF3B1-212ENST00000496458 MED13LQ71F56 2210 aa2.61□□□□□ -1.99
SF3B1-212ENST00000496458 NIPBLQ6KC79 2804 aaeCLIP2.6□□□□□ -1.99
SF3B1-212ENST00000496458 TMSB15BA0A087X1C1 80 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 C16orf90A8MZG2 172 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 C3orf84H3BNL1 204 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 J3QKU1 62 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 NDUFC1O43677 76 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 TCRAP04437 139 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 IAPPP10997 89 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 PLNP26678 52 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 NNATQ16517 81 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 FP248Q71RG6 208 aaPredicted RBP2.6□□□□□ -1.99
SF3B1-212ENST00000496458 PRO1854Q9UHT4 67 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 CSPG4Q6UVK1 2322 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 ZANQ9Y493 2812 aa2.6□□□□□ -1.99
SF3B1-212ENST00000496458 FLNAP21333 2647 aaKnown RBP2.59□□□□□ -1.99
SF3B1-212ENST00000496458 NBPF19A0A087WUL8 3843 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 ARHGAP32A7KAX9 2087 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 USF3Q68DE3 2245 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 TRAV12-1A0A0B4J245 112 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 TRBV30A0A0K0K1B3 111 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 TEX49A0A1B0GTD5 131 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 C17orf98A8MV24 154 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 NDUFB3O43676 98 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 CLPSP04118 112 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 MSMBP08118 114 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 FCER1GP30273 86 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 IFI27P40305 119 aaPredicted RBP2.59□□□□□ -1.99
SF3B1-212ENST00000496458 TFF3Q07654 80 aa2.59□□□□□ -1.99
SF3B1-212ENST00000496458 C2orf82Q6UX34 121 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms