RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 Q8IZM0 81 aa10.06□□□□□ -0.8
LIME1-209ENST00000494776 COLCA2A8K830 154 aa10.04□□□□□ -0.8
LIME1-209ENST00000494776 H3BRM9 83 aa10.04□□□□□ -0.8
LIME1-209ENST00000494776 HSBP1O75506 76 aa10.04□□□□□ -0.8
LIME1-209ENST00000494776 SRRM2Q9UQ35 2752 aaKnown RBP10.04□□□□□ -0.8
LIME1-209ENST00000494776 DMBT1Q9UGM3 2413 aaPredicted RBP10.03□□□□□ -0.8
LIME1-209ENST00000494776 IGLV5-45A0A087WSX0 123 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 SMIM1B2RUZ4 78 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 TLX1NBP0CAT3 122 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 GAGE2EQ4V326 116 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 GAGE2DQ9UEU5 116 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 SPINK8P0C7L1 97 aa10.02□□□□□ -0.81
LIME1-209ENST00000494776 IGLC3P0DOY3 106 aa10.02□□□□□ -0.81
LIME1-209ENST00000494776 KRTAP10-4P60372 401 aaPredicted RBP10.02□□□□□ -0.81
LIME1-209ENST00000494776 Q6ZRP5 223 aa10.02□□□□□ -0.81
LIME1-209ENST00000494776 COX7B2Q8TF08 81 aa10.02□□□□□ -0.81
LIME1-209ENST00000494776 A0A1W2PNN7 141 aa10.01□□□□□ -0.81
LIME1-209ENST00000494776 CXCL5P42830 114 aa10.01□□□□□ -0.81
LIME1-209ENST00000494776 C9orf116Q5BN46 136 aaPredicted RBP10.01□□□□□ -0.81
LIME1-209ENST00000494776 NDUFC2-KCTD14E9PQ53 114 aa10□□□□□ -0.81
LIME1-209ENST00000494776 F8VRH5 84 aa10□□□□□ -0.81
LIME1-209ENST00000494776 SCO1O75880 301 aa10□□□□□ -0.81
LIME1-209ENST00000494776 FAM19A2Q8N3H0 131 aa10□□□□□ -0.81
LIME1-209ENST00000494776 IFI27L1Q96BM0 104 aa10□□□□□ -0.81
LIME1-209ENST00000494776 FLG2Q5D862 2391 aaPredicted RBP9.99□□□□□ -0.81
LIME1-209ENST00000494776 CHTOPQ9Y3Y2 248 aaKnown RBP9.99□□□□□ -0.81
LIME1-209ENST00000494776 HERC1Q15751 4861 aa9.98□□□□□ -0.81
LIME1-209ENST00000494776 SERF1AO75920 110 aa9.98□□□□□ -0.81
LIME1-209ENST00000494776 ZNF22P17026 224 aaPredicted RBP9.98□□□□□ -0.81
LIME1-209ENST00000494776 TMEM170BQ5T4T1 132 aa9.98□□□□□ -0.81
LIME1-209ENST00000494776 C11orf86A6NJI1 115 aa9.96□□□□□ -0.82
LIME1-209ENST00000494776 TRAV12-1A0A0B4J245 112 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 FAM168BA1KXE4 195 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 J3QL48 77 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 LEPROTL1O95214 131 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 PRR3P79522 188 aaKnown RBP9.95□□□□□ -0.82
LIME1-209ENST00000494776 FAM19A5Q7Z5A7 132 aaPredicted RBP9.95□□□□□ -0.82
LIME1-209ENST00000494776 MYCBP2O75592 4640 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 H0Y8G0 127 aa9.94□□□□□ -0.82
LIME1-209ENST00000494776 HNRNPA3P51991 378 aaKnown RBP9.94□□□□□ -0.82
LIME1-209ENST00000494776 PHF5AQ7RTV0 110 aaKnown RBP9.94□□□□□ -0.82
LIME1-209ENST00000494776 IGLV5-39A0A0G2JS06 123 aa9.92□□□□□ -0.82
LIME1-209ENST00000494776 LINC00310P59036 64 aa9.92□□□□□ -0.82
LIME1-209ENST00000494776 C9orf129Q5T035 196 aaKnown RBP9.92□□□□□ -0.82
LIME1-209ENST00000494776 XAGE1AQ9HD64 81 aa9.92□□□□□ -0.82
LIME1-209ENST00000494776 HSPB8Q9UJY1 196 aa9.92□□□□□ -0.82
LIME1-209ENST00000494776 NUPR1O60356 82 aa9.91□□□□□ -0.82
LIME1-209ENST00000494776 FABP4P15090 132 aa9.91□□□□□ -0.82
LIME1-209ENST00000494776 M0QXV9 152 aa9.9□□□□□ -0.82
LIME1-209ENST00000494776 KRTAP29-1A8MX34 341 aaPredicted RBP9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BKO60814 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BJP06899 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BOP23527 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BBP33778 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BDP58876 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BCP62807 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST2H2BEQ16778 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BHQ93079 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BNQ99877 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BMQ99879 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 TMEM223A0PJW6 202 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 OXTP01178 125 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 PFN2P35080 140 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 UBE2BP63146 152 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 PSORS1C2Q9UIG4 136 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 ODF1Q14990 250 aa9.87□□□□□ -0.83
LIME1-209ENST00000494776 C1orf137Q5JT78 98 aa9.87□□□□□ -0.83
LIME1-209ENST00000494776 SFTA2Q6UW10 78 aa9.87□□□□□ -0.83
LIME1-209ENST00000494776 KRTAP7-1Q8IUC3 87 aa9.86□□□□□ -0.83
LIME1-209ENST00000494776 ZNF625Q96I27 306 aaPredicted RBP9.86□□□□□ -0.83
LIME1-209ENST00000494776 MAP1LC3CQ9BXW4 147 aa9.86□□□□□ -0.83
LIME1-209ENST00000494776 SERTAD4-AS1Q5TG53 156 aa9.85□□□□□ -0.83
LIME1-209ENST00000494776 ERG28Q9UKR5 140 aa9.85□□□□□ -0.83
LIME1-209ENST00000494776 PLNP26678 52 aa9.84□□□□□ -0.83
LIME1-209ENST00000494776 LBHQ53QV2 105 aaPredicted RBP9.84□□□□□ -0.83
LIME1-209ENST00000494776 SPINK6Q6UWN8 80 aa9.84□□□□□ -0.83
LIME1-209ENST00000494776 C22orf24Q9Y442 160 aa9.84□□□□□ -0.83
LIME1-209ENST00000494776 S100A1P23297 94 aa9.83□□□□□ -0.84
LIME1-209ENST00000494776 COX17Q14061 63 aa9.83□□□□□ -0.84
LIME1-209ENST00000494776 DPM2O94777 84 aa9.82□□□□□ -0.84
LIME1-209ENST00000494776 PMCHL2Q9BQD1 86 aa9.82□□□□□ -0.84
LIME1-209ENST00000494776 IGKCP01834 107 aa9.81□□□□□ -0.84
LIME1-209ENST00000494776 MRPL55Q7Z7F7 128 aaKnown RBP9.81□□□□□ -0.84
LIME1-209ENST00000494776 LINC00158P58513 81 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 HERVK_113P61574 105 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 SRSF9Q13242 221 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIME1-209ENST00000494776 REG3GQ6UW15 175 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 KRTAP11-1Q8IUC1 163 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 NKAPP1Q8N9T2 125 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 TP73-AS1Q9UF72 201 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 PLA2G2DQ9UNK4 145 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 ATP6V1G1O75348 118 aa9.79□□□□□ -0.84
LIME1-209ENST00000494776 IGLV7-43P04211 117 aa9.79□□□□□ -0.84
LIME1-209ENST00000494776 SND1-IT1Q9HBX3 110 aa9.79□□□□□ -0.84
LIME1-209ENST00000494776 A0A0U1RRA0 63 aa9.78□□□□□ -0.84
LIME1-209ENST00000494776 MEIG1Q5JSS6 88 aa9.78□□□□□ -0.84
LIME1-209ENST00000494776 NDUFA12Q9UI09 145 aa9.78□□□□□ -0.84
LIME1-209ENST00000494776 MYMXA0A1B0GTQ4 84 aa9.77□□□□□ -0.85
LIME1-209ENST00000494776 SYS1-DBNDD2H3BUS1 97 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms