RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 LINC01549A6NIU2 74 aa20.52■□□□□ 0.88
CBX4-203ENST00000494546 PSORS1C2Q9UIG4 136 aa20.52■□□□□ 0.88
CBX4-203ENST00000494546 FAM19A5Q7Z5A7 132 aaPredicted RBP20.51■□□□□ 0.87
CBX4-203ENST00000494546 Q8IZM0 81 aa20.51■□□□□ 0.87
CBX4-203ENST00000494546 NDUFC2-KCTD14E9PQ53 114 aa20.5■□□□□ 0.87
CBX4-203ENST00000494546 SRSF9Q13242 221 aaKnown RBP eCLIP20.49■□□□□ 0.87
CBX4-203ENST00000494546 LINC00469Q8N7U9 141 aa20.49■□□□□ 0.87
CBX4-203ENST00000494546 TRAPPC1Q9Y5R8 145 aa20.49■□□□□ 0.87
CBX4-203ENST00000494546 NDUFA5Q16718 116 aa20.47■□□□□ 0.87
CBX4-203ENST00000494546 CST9LQ9H4G1 147 aa20.46■□□□□ 0.87
CBX4-203ENST00000494546 TINCRA0A1B0GVN0 87 aa20.45■□□□□ 0.86
CBX4-203ENST00000494546 SNAPINO95295 136 aa20.45■□□□□ 0.86
CBX4-203ENST00000494546 C1orf137Q5JT78 98 aa20.45■□□□□ 0.86
CBX4-203ENST00000494546 REG3GQ6UW15 175 aa20.45■□□□□ 0.86
CBX4-203ENST00000494546 SVBPQ8N300 66 aa20.45■□□□□ 0.86
CBX4-203ENST00000494546 LINC01600Q96MT4 127 aa20.45■□□□□ 0.86
CBX4-203ENST00000494546 PMVKQ15126 192 aa20.42■□□□□ 0.86
CBX4-203ENST00000494546 C9orf129Q5T035 196 aaKnown RBP20.42■□□□□ 0.86
CBX4-203ENST00000494546 PLA2G2DQ9UNK4 145 aa20.42■□□□□ 0.86
CBX4-203ENST00000494546 KRTAP7-1Q8IUC3 87 aa20.41■□□□□ 0.86
CBX4-203ENST00000494546 C18orf32Q8TCD1 76 aa20.41■□□□□ 0.86
CBX4-203ENST00000494546 SMIM1B2RUZ4 78 aa20.4■□□□□ 0.86
CBX4-203ENST00000494546 M0QXV9 152 aa20.4■□□□□ 0.86
CBX4-203ENST00000494546 F8VRH5 84 aa20.39■□□□□ 0.85
CBX4-203ENST00000494546 IGLV5-45A0A087WSX0 123 aa20.38■□□□□ 0.85
CBX4-203ENST00000494546 KRTAP11-1Q8IUC1 163 aa20.38■□□□□ 0.85
CBX4-203ENST00000494546 LINC00614P0C842 121 aa20.37■□□□□ 0.85
CBX4-203ENST00000494546 PDZD11Q5EBL8 140 aa20.37■□□□□ 0.85
CBX4-203ENST00000494546 URB1-AS1Q96HZ7 61 aa20.37■□□□□ 0.85
CBX4-203ENST00000494546 CXCL5P42830 114 aa20.36■□□□□ 0.85
CBX4-203ENST00000494546 SPINK8P0C7L1 97 aa20.35■□□□□ 0.85
CBX4-203ENST00000494546 COX7B2Q8TF08 81 aa20.35■□□□□ 0.85
CBX4-203ENST00000494546 A0A096LNJ9 63 aa20.34■□□□□ 0.85
CBX4-203ENST00000494546 NDUFA6P56556 154 aa20.34■□□□□ 0.85
CBX4-203ENST00000494546 UBE2BP63146 152 aa20.34■□□□□ 0.85
CBX4-203ENST00000494546 XAGE1AQ9HD64 81 aa20.33■□□□□ 0.85
CBX4-203ENST00000494546 PMCHL1Q16048 86 aa20.32■□□□□ 0.84
CBX4-203ENST00000494546 HBDP02042 147 aa20.31■□□□□ 0.84
CBX4-203ENST00000494546 IGLV7-43P04211 117 aa20.31■□□□□ 0.84
CBX4-203ENST00000494546 HMCN2Q8NDA2 5059 aa20.3■□□□□ 0.84
CBX4-203ENST00000494546 H3BRM9 83 aa20.29■□□□□ 0.84
CBX4-203ENST00000494546 RAB5BP61020 215 aa20.28■□□□□ 0.84
CBX4-203ENST00000494546 IGLC3P0DOY3 106 aa20.27■□□□□ 0.84
CBX4-203ENST00000494546 KRTAP10-8P60410 259 aa20.26■□□□□ 0.83
CBX4-203ENST00000494546 TNXBP22105 4242 aa20.25■□□□□ 0.83
CBX4-203ENST00000494546 ODF1Q14990 250 aa20.24■□□□□ 0.83
CBX4-203ENST00000494546 DIRC1Q969H9 104 aa20.24■□□□□ 0.83
CBX4-203ENST00000494546 YPEL4Q96NS1 127 aa20.24■□□□□ 0.83
CBX4-203ENST00000494546 C22orf24Q9Y442 160 aa20.24■□□□□ 0.83
CBX4-203ENST00000494546 ATP5LO75964 103 aa20.21■□□□□ 0.83
CBX4-203ENST00000494546 ZNF22P17026 224 aaPredicted RBP20.19■□□□□ 0.82
CBX4-203ENST00000494546 LBHQ53QV2 105 aaPredicted RBP20.18■□□□□ 0.82
CBX4-203ENST00000494546 BAGE3Q86Y29 109 aa20.18■□□□□ 0.82
CBX4-203ENST00000494546 H0Y9J4 135 aa20.16■□□□□ 0.82
CBX4-203ENST00000494546 CBLN2Q8IUK8 224 aa20.16■□□□□ 0.82
CBX4-203ENST00000494546 IGLV5-39A0A0G2JS06 123 aa20.15■□□□□ 0.82
CBX4-203ENST00000494546 MRPL55Q7Z7F7 128 aaKnown RBP20.13■□□□□ 0.81
CBX4-203ENST00000494546 C11orf86A6NJI1 115 aa20.12■□□□□ 0.81
CBX4-203ENST00000494546 CHCHD1Q96BP2 118 aaKnown RBP20.12■□□□□ 0.81
CBX4-203ENST00000494546 TP73-AS1Q9UF72 201 aa20.12■□□□□ 0.81
CBX4-203ENST00000494546 TMEM170BQ5T4T1 132 aa20.11■□□□□ 0.81
CBX4-203ENST00000494546 NUPR1O60356 82 aa20.08■□□□□ 0.81
CBX4-203ENST00000494546 PFN2P35080 140 aa20.08■□□□□ 0.81
CBX4-203ENST00000494546 CHTOPQ9Y3Y2 248 aaKnown RBP20.08■□□□□ 0.81
CBX4-203ENST00000494546 PRR26Q8N8Z3 221 aa20.06■□□□□ 0.8
CBX4-203ENST00000494546 IFI27L1Q96BM0 104 aa20.05■□□□□ 0.8
CBX4-203ENST00000494546 SLC7A5P1Q8MH63 180 aa20.04■□□□□ 0.8
CBX4-203ENST00000494546 LINC00167Q96N53 147 aa20.04■□□□□ 0.8
CBX4-203ENST00000494546 RPL37AP8A6NKH3 93 aa20.03■□□□□ 0.8
CBX4-203ENST00000494546 ZNF861PO60384 105 aa20.03■□□□□ 0.8
CBX4-203ENST00000494546 ZNF625Q96I27 306 aaPredicted RBP20.03■□□□□ 0.8
CBX4-203ENST00000494546 GAGE10A6NGK3 116 aa20.02■□□□□ 0.8
CBX4-203ENST00000494546 ERG28Q9UKR5 140 aa20.02■□□□□ 0.8
CBX4-203ENST00000494546 HSBP1O75506 76 aa20.01■□□□□ 0.79
CBX4-203ENST00000494546 NKAPP1Q8N9T2 125 aa20.01■□□□□ 0.79
CBX4-203ENST00000494546 TRGC2P03986 189 aa20■□□□□ 0.79
CBX4-203ENST00000494546 FAM19A2Q8N3H0 131 aa20■□□□□ 0.79
CBX4-203ENST00000494546 IGLV5-37A0A075B6J1 123 aa19.99■□□□□ 0.79
CBX4-203ENST00000494546 TRAV12-1A0A0B4J245 112 aa19.99■□□□□ 0.79
CBX4-203ENST00000494546 KRTAP1-4P0C5Y4 121 aa19.99■□□□□ 0.79
CBX4-203ENST00000494546 BCE1O60756 84 aa19.96■□□□□ 0.79
CBX4-203ENST00000494546 SND1-IT1Q9HBX3 110 aa19.96■□□□□ 0.79
CBX4-203ENST00000494546 IGLV1-50A0A075B6I6 118 aa19.95■□□□□ 0.78
CBX4-203ENST00000494546 COX17Q14061 63 aa19.95■□□□□ 0.78
CBX4-203ENST00000494546 SFTA2Q6UW10 78 aa19.95■□□□□ 0.78
CBX4-203ENST00000494546 TMEM223A0PJW6 202 aa19.94■□□□□ 0.78
CBX4-203ENST00000494546 SCO1O75880 301 aa19.93■□□□□ 0.78
CBX4-203ENST00000494546 RPL28P46779 137 aaKnown RBP19.92■□□□□ 0.78
CBX4-203ENST00000494546 IGKV2-28A0A075B6P5 120 aa19.88■□□□□ 0.77
CBX4-203ENST00000494546 H0Y8G0 127 aa19.88■□□□□ 0.77
CBX4-203ENST00000494546 SERF1AO75920 110 aa19.88■□□□□ 0.77
CBX4-203ENST00000494546 IGKV2D-28P01615 120 aa19.88■□□□□ 0.77
CBX4-203ENST00000494546 VPREB1P12018 145 aa19.87■□□□□ 0.77
CBX4-203ENST00000494546 UBR4Q5T4S7 5183 aa19.86■□□□□ 0.77
CBX4-203ENST00000494546 LINC00158P58513 81 aa19.86■□□□□ 0.77
CBX4-203ENST00000494546 LINC00310P59036 64 aa19.85■□□□□ 0.77
CBX4-203ENST00000494546 RPL24P83731 157 aaKnown RBP19.85■□□□□ 0.77
CBX4-203ENST00000494546 LEPROTL1O95214 131 aa19.84■□□□□ 0.77
CBX4-203ENST00000494546 RPL13AP40429 203 aaKnown RBP19.84■□□□□ 0.77
CBX4-203ENST00000494546 A0A0U1RRA0 63 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms