RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 C2orf48Q96LS8 159 aa13.67□□□□□ -0.22
COL27A1-207ENST00000494090 LINC01561Q8N1V8 128 aa13.66□□□□□ -0.22
COL27A1-207ENST00000494090 C6orf223Q8N319 242 aa13.66□□□□□ -0.22
COL27A1-207ENST00000494090 RETNQ9HD89 108 aa13.66□□□□□ -0.22
COL27A1-207ENST00000494090 A0A1B0GUV1 79 aa13.66□□□□□ -0.22
COL27A1-207ENST00000494090 Q6ZTC4 211 aa13.66□□□□□ -0.22
COL27A1-207ENST00000494090 C1orf137Q5JT78 98 aa13.66□□□□□ -0.22
COL27A1-207ENST00000494090 PIEZO2Q9H5I5 2752 aa13.66□□□□□ -0.22
COL27A1-207ENST00000494090 RAI1Q7Z5J4 1906 aaPredicted RBP13.66□□□□□ -0.22
COL27A1-207ENST00000494090 IGLV5-52A0A0A0MRZ9 124 aa13.65□□□□□ -0.22
COL27A1-207ENST00000494090 EXPH5Q8NEV8 1989 aa13.65□□□□□ -0.22
COL27A1-207ENST00000494090 IGF2RP11717 2491 aa13.65□□□□□ -0.22
COL27A1-207ENST00000494090 Q6ZSN1 163 aa13.65□□□□□ -0.23
COL27A1-207ENST00000494090 A0A087WYN8 130 aa13.64□□□□□ -0.23
COL27A1-207ENST00000494090 C9orf116Q5BN46 136 aaPredicted RBP13.64□□□□□ -0.23
COL27A1-207ENST00000494090 LINC01546A6NGU7 62 aa13.63□□□□□ -0.23
COL27A1-207ENST00000494090 DOPEY1Q5JWR5 2465 aa13.61□□□□□ -0.23
COL27A1-207ENST00000494090 KIF25-AS1Q9Y6Z4 181 aa13.61□□□□□ -0.23
COL27A1-207ENST00000494090 PRYO14603 147 aa13.6□□□□□ -0.23
COL27A1-207ENST00000494090 MYO9AB2RTY4 2548 aa13.6□□□□□ -0.23
COL27A1-207ENST00000494090 NHLRC4P0CG21 123 aaPredicted RBP13.59□□□□□ -0.23
COL27A1-207ENST00000494090 TRAV7A0A075B6U4 112 aa13.59□□□□□ -0.23
COL27A1-207ENST00000494090 PRR3P79522 188 aaKnown RBP13.59□□□□□ -0.23
COL27A1-207ENST00000494090 A6NED7 52 aa13.58□□□□□ -0.24
COL27A1-207ENST00000494090 FAM30AQ9NZY2 134 aa13.58□□□□□ -0.24
COL27A1-207ENST00000494090 Q6ZVQ6 151 aa13.57□□□□□ -0.24
COL27A1-207ENST00000494090 FSHBP01225 129 aa13.57□□□□□ -0.24
COL27A1-207ENST00000494090 C1orf134Q5TEV5 83 aa13.57□□□□□ -0.24
COL27A1-207ENST00000494090 LYPD5Q6UWN5 251 aa13.56□□□□□ -0.24
COL27A1-207ENST00000494090 CIRBP-AS1Q8TBR5 109 aa13.56□□□□□ -0.24
COL27A1-207ENST00000494090 ESRGQ1W209 222 aa13.56□□□□□ -0.24
COL27A1-207ENST00000494090 TLN1Q9Y490 2541 aaKnown RBP13.55□□□□□ -0.24
COL27A1-207ENST00000494090 A0A087WVE0 104 aa13.53□□□□□ -0.24
COL27A1-207ENST00000494090 SRCAPQ6ZRS2 3230 aa13.53□□□□□ -0.24
COL27A1-207ENST00000494090 ADAMTS20P59510 1910 aa13.53□□□□□ -0.24
COL27A1-207ENST00000494090 PRR4Q16378 134 aa13.53□□□□□ -0.24
COL27A1-207ENST00000494090 Q9BRP9 147 aa13.53□□□□□ -0.24
COL27A1-207ENST00000494090 LINC01556Q5JQF7 62 aa13.52□□□□□ -0.25
COL27A1-207ENST00000494090 EP400Q96L91 3159 aa13.51□□□□□ -0.25
COL27A1-207ENST00000494090 CELA1Q9UNI1 258 aa13.5□□□□□ -0.25
COL27A1-207ENST00000494090 Q8N2B8 174 aa13.5□□□□□ -0.25
COL27A1-207ENST00000494090 LINC00208Q96KT6 92 aa13.5□□□□□ -0.25
COL27A1-207ENST00000494090 FAM19A4Q96LR4 140 aa13.5□□□□□ -0.25
COL27A1-207ENST00000494090 A0A0U1RQV1 116 aa13.5□□□□□ -0.25
COL27A1-207ENST00000494090 SMIM26A0A096LP01 95 aa13.49□□□□□ -0.25
COL27A1-207ENST00000494090 C11orf72Q8NBR9 251 aa13.49□□□□□ -0.25
COL27A1-207ENST00000494090 LINC00315P59091 139 aa13.48□□□□□ -0.25
COL27A1-207ENST00000494090 IGHV6-1A0A0B4J1U7 121 aa13.48□□□□□ -0.25
COL27A1-207ENST00000494090 IGLV5-39A0A0G2JS06 123 aa13.47□□□□□ -0.25
COL27A1-207ENST00000494090 LINC00575Q6W349 94 aa13.46□□□□□ -0.25
COL27A1-207ENST00000494090 LIMD2Q9BT23 127 aa13.46□□□□□ -0.26
COL27A1-207ENST00000494090 LINC00337Q8N6G1 96 aa13.45□□□□□ -0.26
COL27A1-207ENST00000494090 FHL3Q13643 280 aa13.44□□□□□ -0.26
COL27A1-207ENST00000494090 Q8N3U1 123 aa13.44□□□□□ -0.26
COL27A1-207ENST00000494090 LINC01547P58512 204 aaPredicted RBP13.44□□□□□ -0.26
COL27A1-207ENST00000494090 A0A087WSZ3 146 aa13.43□□□□□ -0.26
COL27A1-207ENST00000494090 TET2Q6N021 2002 aaPredicted RBP13.43□□□□□ -0.26
COL27A1-207ENST00000494090 Q6ZRU5 148 aa13.42□□□□□ -0.26
COL27A1-207ENST00000494090 CDIP1Q9H305 208 aa13.42□□□□□ -0.26
COL27A1-207ENST00000494090 LINC00846Q9NV44 126 aa13.41□□□□□ -0.26
COL27A1-207ENST00000494090 TRBV7-6A0A0J9YX20 115 aa13.4□□□□□ -0.26
COL27A1-207ENST00000494090 WDR87Q6ZQQ6 2873 aa13.4□□□□□ -0.26
COL27A1-207ENST00000494090 TRBV7-7A0A0K0K1E9 115 aa13.38□□□□□ -0.27
COL27A1-207ENST00000494090 IGHV3OR16-9A0A0B4J2B5 98 aa13.37□□□□□ -0.27
COL27A1-207ENST00000494090 JMJD1CQ15652 2540 aa13.37□□□□□ -0.27
COL27A1-207ENST00000494090 C22orf24Q9Y442 160 aa13.35□□□□□ -0.27
COL27A1-207ENST00000494090 AGRNO00468 2067 aa13.35□□□□□ -0.27
COL27A1-207ENST00000494090 IGLV5-45A0A087WSX0 123 aa13.35□□□□□ -0.27
COL27A1-207ENST00000494090 A8MTW9 85 aa13.34□□□□□ -0.27
COL27A1-207ENST00000494090 H3BNG1 76 aa13.34□□□□□ -0.27
COL27A1-207ENST00000494090 H0Y9P7 68 aa13.33□□□□□ -0.27
COL27A1-207ENST00000494090 SMCR5Q8TEV8 140 aa13.33□□□□□ -0.28
COL27A1-207ENST00000494090 HCG22E2RYF7 251 aa13.33□□□□□ -0.28
COL27A1-207ENST00000494090 SMCPP49901 116 aaPredicted RBP13.32□□□□□ -0.28
COL27A1-207ENST00000494090 ABCA12Q86UK0 2595 aa13.31□□□□□ -0.28
COL27A1-207ENST00000494090 CXCL6P80162 114 aa13.31□□□□□ -0.28
COL27A1-207ENST00000494090 PRLHP81277 87 aa13.3□□□□□ -0.28
COL27A1-207ENST00000494090 hDV103S1A0JD37 113 aa13.3□□□□□ -0.28
COL27A1-207ENST00000494090 PRO0461Q9UI25 63 aa13.3□□□□□ -0.28
COL27A1-207ENST00000494090 COL4A2P08572 1712 aa13.28□□□□□ -0.28
COL27A1-207ENST00000494090 SOSTDC1Q6X4U4 206 aa13.28□□□□□ -0.28
COL27A1-207ENST00000494090 TMEM254Q8TBM7 123 aa13.28□□□□□ -0.28
COL27A1-207ENST00000494090 PCOTHQ58A44 107 aa13.27□□□□□ -0.28
COL27A1-207ENST00000494090 MDFIQ99750 246 aa13.27□□□□□ -0.28
COL27A1-207ENST00000494090 ZFYVE26Q68DK2 2539 aa13.27□□□□□ -0.28
COL27A1-207ENST00000494090 A0A1B0GW54 56 aa13.26□□□□□ -0.29
COL27A1-207ENST00000494090 C1orf195Q5TG92 126 aa13.26□□□□□ -0.29
COL27A1-207ENST00000494090 KLK9Q2XQG4 91 aa13.26□□□□□ -0.29
COL27A1-207ENST00000494090 X6R8D5 127 aa13.25□□□□□ -0.29
COL27A1-207ENST00000494090 PTPRBP23467 1997 aa13.24□□□□□ -0.29
COL27A1-207ENST00000494090 USP9XQ93008 2570 aaPredicted RBP13.23□□□□□ -0.29
COL27A1-207ENST00000494090 RETNLBQ9BQ08 111 aa13.23□□□□□ -0.29
COL27A1-207ENST00000494090 LRRK2Q5S007 2527 aa13.22□□□□□ -0.29
COL27A1-207ENST00000494090 SBSPONQ8IVN8 264 aa13.22□□□□□ -0.29
COL27A1-207ENST00000494090 SPATA3Q8NHX4 192 aa13.21□□□□□ -0.29
COL27A1-207ENST00000494090 DEFB116Q30KQ4 102 aa13.2□□□□□ -0.3
COL27A1-207ENST00000494090 KIAA0087Q14695 138 aa13.2□□□□□ -0.3
COL27A1-207ENST00000494090 FAM218AQ96MZ4 157 aa13.2□□□□□ -0.3
COL27A1-207ENST00000494090 LINC00167Q96N53 147 aa13.2□□□□□ -0.3
COL27A1-207ENST00000494090 Q9UF83 564 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms