RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 PPP1R2P9O14990 202 aa4.82□□□□□ -1.64
USP39-216ENST00000490193 TSPAN13O95857 204 aa4.82□□□□□ -1.64
USP39-216ENST00000490193 KIAA0087Q14695 138 aa4.82□□□□□ -1.64
USP39-216ENST00000490193 GAGE2EQ4V326 116 aa4.82□□□□□ -1.64
USP39-216ENST00000490193 ERASQ7Z444 233 aa4.82□□□□□ -1.64
USP39-216ENST00000490193 GAGE2DQ9UEU5 116 aa4.82□□□□□ -1.64
USP39-216ENST00000490193 A0A087X002 238 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 TRBV30A0A0K0K1B3 111 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 HIGD1CA8MV81 97 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 NDUFC2-KCTD14E9PQ53 114 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 SMKR1H3BMG3 65 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 NUPR1O60356 82 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 PPBPP02775 128 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 S100A8P05109 93 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 RPL32P62910 135 aaKnown RBP4.81□□□□□ -1.64
USP39-216ENST00000490193 HERV-K104P63124 156 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 MRPS36P82909 103 aaKnown RBP4.81□□□□□ -1.64
USP39-216ENST00000490193 C9orf129Q5T035 196 aaKnown RBP4.81□□□□□ -1.64
USP39-216ENST00000490193 SPANXA1Q9NS26 97 aa4.81□□□□□ -1.64
USP39-216ENST00000490193 TPRXLQ17RH7 258 aa4.8□□□□□ -1.64
USP39-216ENST00000490193 C5orf47Q569G3 176 aa4.8□□□□□ -1.64
USP39-216ENST00000490193 C20orf78Q9BR46 151 aa4.8□□□□□ -1.64
USP39-216ENST00000490193 TRBV24-1A0A075B6N3 115 aa4.79□□□□□ -1.64
USP39-216ENST00000490193 CRYGAP11844 174 aa4.79□□□□□ -1.64
USP39-216ENST00000490193 RPL39P62891 51 aaKnown RBP4.79□□□□□ -1.64
USP39-216ENST00000490193 HBBP68871 147 aa4.79□□□□□ -1.64
USP39-216ENST00000490193 TYMSOSQ8TAI1 123 aa4.79□□□□□ -1.64
USP39-216ENST00000490193 C14orf144Q96I85 54 aa4.79□□□□□ -1.64
USP39-216ENST00000490193 OSTCQ9NRP0 149 aa4.79□□□□□ -1.64
USP39-216ENST00000490193 TGIF2-C20orf24A0A0A6YYL0 155 aa4.78□□□□□ -1.64
USP39-216ENST00000490193 LINC00862A6NCI5 91 aa4.78□□□□□ -1.64
USP39-216ENST00000490193 IFITM10A6NMD0 228 aa4.78□□□□□ -1.64
USP39-216ENST00000490193 DLEU1O43261 78 aa4.78□□□□□ -1.64
USP39-216ENST00000490193 SCO1O75880 301 aa4.78□□□□□ -1.64
USP39-216ENST00000490193 RIGQ13278 110 aa4.78□□□□□ -1.64
USP39-216ENST00000490193 LINC01551Q86U37 167 aa4.78□□□□□ -1.64
USP39-216ENST00000490193 LINC01561Q8N1V8 128 aa4.78□□□□□ -1.64
USP39-216ENST00000490193 RPL28P46779 137 aaKnown RBP4.77□□□□□ -1.65
USP39-216ENST00000490193 MRPL51Q4U2R6 128 aaKnown RBP4.77□□□□□ -1.65
USP39-216ENST00000490193 LINC00242Q5T6M2 205 aa4.77□□□□□ -1.65
USP39-216ENST00000490193 FAM104BQ5XKR9 115 aa4.77□□□□□ -1.65
USP39-216ENST00000490193 C2orf82Q6UX34 121 aa4.77□□□□□ -1.65
USP39-216ENST00000490193 SMIM2Q9BVW6 85 aa4.77□□□□□ -1.65
USP39-216ENST00000490193 KRTAP3-1Q9BYR8 98 aa4.77□□□□□ -1.65
USP39-216ENST00000490193 CTDSP1Q9GZU7 261 aa4.77□□□□□ -1.65
USP39-216ENST00000490193 TP73-AS1Q9UF72 201 aa4.77□□□□□ -1.65
USP39-216ENST00000490193 C22orf24Q9Y442 160 aa4.77□□□□□ -1.65
USP39-216ENST00000490193 A0A1B0GV72 72 aa4.76□□□□□ -1.65
USP39-216ENST00000490193 BCE1O60756 84 aa4.76□□□□□ -1.65
USP39-216ENST00000490193 SEC61GP60059 68 aa4.76□□□□□ -1.65
USP39-216ENST00000490193 KRTAP13-2Q52LG2 175 aa4.76□□□□□ -1.65
USP39-216ENST00000490193 CDIP1Q9H305 208 aa4.76□□□□□ -1.65
USP39-216ENST00000490193 PYGO1Q9Y3Y4 419 aa4.76□□□□□ -1.65
USP39-216ENST00000490193 V9GYV3 84 aa4.76□□□□□ -1.65
USP39-216ENST00000490193 ZNF727A8MUV8 499 aa4.75□□□□□ -1.65
USP39-216ENST00000490193 COX19Q49B96 90 aa4.75□□□□□ -1.65
USP39-216ENST00000490193 RETNLBQ9BQ08 111 aa4.75□□□□□ -1.65
USP39-216ENST00000490193 SMIM7Q9BQ49 75 aa4.75□□□□□ -1.65
USP39-216ENST00000490193 NAT8BQ9UHF3 227 aa4.75□□□□□ -1.65
USP39-216ENST00000490193 IGLV4-3A0A075B6K6 122 aa4.74□□□□□ -1.65
USP39-216ENST00000490193 CKS2P33552 79 aa4.74□□□□□ -1.65
USP39-216ENST00000490193 IFI27P40305 119 aaPredicted RBP4.74□□□□□ -1.65
USP39-216ENST00000490193 FAM229BQ4G0N7 80 aa4.74□□□□□ -1.65
USP39-216ENST00000490193 MRPL55Q7Z7F7 128 aaKnown RBP4.74□□□□□ -1.65
USP39-216ENST00000490193 LINC00304Q8N9R0 145 aa4.74□□□□□ -1.65
USP39-216ENST00000490193 IGLV7-46A0A075B6I9 117 aa4.73□□□□□ -1.65
USP39-216ENST00000490193 C5orf52A6NGY3 159 aa4.73□□□□□ -1.65
USP39-216ENST00000490193 FAM74A3Q4VXF1 159 aa4.73□□□□□ -1.65
USP39-216ENST00000490193 LINC00173Q6ZV60 143 aa4.73□□□□□ -1.65
USP39-216ENST00000490193 KRTAP13-1Q8IUC0 172 aa4.73□□□□□ -1.65
USP39-216ENST00000490193 Q8IZM0 81 aa4.73□□□□□ -1.65
USP39-216ENST00000490193 XAGE1AQ9HD64 81 aa4.73□□□□□ -1.65
USP39-216ENST00000490193 SMIM27A0A1W2PRY6 76 aa4.72□□□□□ -1.65
USP39-216ENST00000490193 D6R8Y8 96 aa4.72□□□□□ -1.65
USP39-216ENST00000490193 NPYP01303 97 aa4.72□□□□□ -1.65
USP39-216ENST00000490193 CKS1BP61024 79 aa4.72□□□□□ -1.65
USP39-216ENST00000490193 Q6ZN92 141 aa4.72□□□□□ -1.65
USP39-216ENST00000490193 TMEM141Q96I45 108 aa4.72□□□□□ -1.65
USP39-216ENST00000490193 EIF5A2Q9GZV4 153 aaKnown RBP4.72□□□□□ -1.65
USP39-216ENST00000490193 ANAPC11Q9NYG5 84 aa4.72□□□□□ -1.65
USP39-216ENST00000490193 A0A0U1RRA0 63 aa4.71□□□□□ -1.66
USP39-216ENST00000490193 PRSS2P07478 247 aa4.71□□□□□ -1.66
USP39-216ENST00000490193 SCGB1A1P11684 91 aa4.71□□□□□ -1.66
USP39-216ENST00000490193 C6orf226Q5I0X4 101 aa4.71□□□□□ -1.66
USP39-216ENST00000490193 TEX43Q6ZNM6 134 aa4.71□□□□□ -1.66
USP39-216ENST00000490193 FAM19A3Q7Z5A8 133 aa4.71□□□□□ -1.66
USP39-216ENST00000490193 TCTE3Q8IZS6 198 aa4.71□□□□□ -1.66
USP39-216ENST00000490193 LINC00167Q96N53 147 aa4.71□□□□□ -1.66
USP39-216ENST00000490193 IGLV5-37A0A075B6J1 123 aa4.7□□□□□ -1.66
USP39-216ENST00000490193 F8VRH5 84 aa4.7□□□□□ -1.66
USP39-216ENST00000490193 SRP19P09132 144 aaKnown RBP4.7□□□□□ -1.66
USP39-216ENST00000490193 NPSP0C0P6 89 aa4.7□□□□□ -1.66
USP39-216ENST00000490193 RAB5AP20339 215 aa4.7□□□□□ -1.66
USP39-216ENST00000490193 AMELXQ99217 191 aa4.7□□□□□ -1.66
USP39-216ENST00000490193 TOMM7Q9P0U1 55 aa4.7□□□□□ -1.66
USP39-216ENST00000490193 A0A1B0GXF2 115 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 GAGE10A6NGK3 116 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 RPL37AP8A6NKH3 93 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 CXCL5P42830 114 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 LINC01547P58512 204 aaPredicted RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms