RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 FAT3Q8TDW7 4589 aa12.67□□□□□ -0.38
HDAC4-209ENST00000487617 Q8IZM0 81 aa12.66□□□□□ -0.38
HDAC4-209ENST00000487617 FAM168BA1KXE4 195 aa12.65□□□□□ -0.38
HDAC4-209ENST00000487617 MT1HL1P0DM35 61 aa12.65□□□□□ -0.38
HDAC4-209ENST00000487617 SERTAD4-AS1Q5TG53 156 aa12.65□□□□□ -0.38
HDAC4-209ENST00000487617 LINC00469Q8N7U9 141 aa12.65□□□□□ -0.38
HDAC4-209ENST00000487617 NDUFC2-KCTD14E9PQ53 114 aa12.64□□□□□ -0.39
HDAC4-209ENST00000487617 SPINK6Q6UWN8 80 aa12.64□□□□□ -0.39
HDAC4-209ENST00000487617 CST9LQ9H4G1 147 aa12.64□□□□□ -0.39
HDAC4-209ENST00000487617 TINCRA0A1B0GVN0 87 aa12.63□□□□□ -0.39
HDAC4-209ENST00000487617 FAM19A5Q7Z5A7 132 aaPredicted RBP12.63□□□□□ -0.39
HDAC4-209ENST00000487617 PSORS1C2Q9UIG4 136 aa12.63□□□□□ -0.39
HDAC4-209ENST00000487617 PMVKQ15126 192 aa12.62□□□□□ -0.39
HDAC4-209ENST00000487617 SRSF9Q13242 221 aaKnown RBP eCLIP12.61□□□□□ -0.39
HDAC4-209ENST00000487617 C18orf32Q8TCD1 76 aa12.61□□□□□ -0.39
HDAC4-209ENST00000487617 LINC00614P0C842 121 aa12.6□□□□□ -0.39
HDAC4-209ENST00000487617 IGLV5-45A0A087WSX0 123 aa12.59□□□□□ -0.39
HDAC4-209ENST00000487617 SMIM1B2RUZ4 78 aa12.59□□□□□ -0.39
HDAC4-209ENST00000487617 C1orf137Q5JT78 98 aa12.59□□□□□ -0.39
HDAC4-209ENST00000487617 URB1-AS1Q96HZ7 61 aa12.59□□□□□ -0.39
HDAC4-209ENST00000487617 F8VRH5 84 aa12.58□□□□□ -0.4
HDAC4-209ENST00000487617 PDZD11Q5EBL8 140 aa12.58□□□□□ -0.4
HDAC4-209ENST00000487617 C9orf129Q5T035 196 aaKnown RBP12.58□□□□□ -0.4
HDAC4-209ENST00000487617 REG3GQ6UW15 175 aa12.58□□□□□ -0.4
HDAC4-209ENST00000487617 A0A096LNJ9 63 aa12.57□□□□□ -0.4
HDAC4-209ENST00000487617 M0QXV9 152 aa12.57□□□□□ -0.4
HDAC4-209ENST00000487617 CXCL5P42830 114 aa12.57□□□□□ -0.4
HDAC4-209ENST00000487617 NDUFA6P56556 154 aa12.57□□□□□ -0.4
HDAC4-209ENST00000487617 KRTAP7-1Q8IUC3 87 aa12.57□□□□□ -0.4
HDAC4-209ENST00000487617 LINC01600Q96MT4 127 aa12.57□□□□□ -0.4
HDAC4-209ENST00000487617 HBDP02042 147 aa12.56□□□□□ -0.4
HDAC4-209ENST00000487617 SPINK8P0C7L1 97 aa12.56□□□□□ -0.4
HDAC4-209ENST00000487617 PMCHL1Q16048 86 aa12.56□□□□□ -0.4
HDAC4-209ENST00000487617 COX7B2Q8TF08 81 aa12.56□□□□□ -0.4
HDAC4-209ENST00000487617 RAB5BP61020 215 aa12.55□□□□□ -0.4
HDAC4-209ENST00000487617 KRTAP11-1Q8IUC1 163 aa12.54□□□□□ -0.4
HDAC4-209ENST00000487617 YPEL4Q96NS1 127 aa12.54□□□□□ -0.4
HDAC4-209ENST00000487617 H3BRM9 83 aa12.53□□□□□ -0.4
HDAC4-209ENST00000487617 UBE2BP63146 152 aa12.53□□□□□ -0.4
HDAC4-209ENST00000487617 XAGE1AQ9HD64 81 aa12.53□□□□□ -0.4
HDAC4-209ENST00000487617 IGLC3P0DOY3 106 aa12.52□□□□□ -0.41
HDAC4-209ENST00000487617 PLA2G2DQ9UNK4 145 aa12.52□□□□□ -0.41
HDAC4-209ENST00000487617 IGLV7-43P04211 117 aa12.51□□□□□ -0.41
HDAC4-209ENST00000487617 ATP5LO75964 103 aa12.5□□□□□ -0.41
HDAC4-209ENST00000487617 CBLN2Q8IUK8 224 aa12.49□□□□□ -0.41
HDAC4-209ENST00000487617 ZNF22P17026 224 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-209ENST00000487617 BAGE3Q86Y29 109 aa12.47□□□□□ -0.41
HDAC4-209ENST00000487617 C22orf24Q9Y442 160 aa12.47□□□□□ -0.41
HDAC4-209ENST00000487617 KRTAP10-8P60410 259 aa12.46□□□□□ -0.41
HDAC4-209ENST00000487617 DIRC1Q969H9 104 aa12.46□□□□□ -0.41
HDAC4-209ENST00000487617 CHCHD1Q96BP2 118 aaKnown RBP12.46□□□□□ -0.41
HDAC4-209ENST00000487617 IGLV5-39A0A0G2JS06 123 aa12.45□□□□□ -0.42
HDAC4-209ENST00000487617 LBHQ53QV2 105 aaPredicted RBP12.44□□□□□ -0.42
HDAC4-209ENST00000487617 C11orf86A6NJI1 115 aa12.43□□□□□ -0.42
HDAC4-209ENST00000487617 SLC7A5P1Q8MH63 180 aa12.43□□□□□ -0.42
HDAC4-209ENST00000487617 TMEM170BQ5T4T1 132 aa12.42□□□□□ -0.42
HDAC4-209ENST00000487617 H0Y9J4 135 aa12.41□□□□□ -0.42
HDAC4-209ENST00000487617 ODF1Q14990 250 aa12.41□□□□□ -0.42
HDAC4-209ENST00000487617 MRPL55Q7Z7F7 128 aaKnown RBP12.41□□□□□ -0.42
HDAC4-209ENST00000487617 TP73-AS1Q9UF72 201 aa12.41□□□□□ -0.42
HDAC4-209ENST00000487617 CHTOPQ9Y3Y2 248 aaKnown RBP12.41□□□□□ -0.42
HDAC4-209ENST00000487617 IFI27L1Q96BM0 104 aa12.4□□□□□ -0.42
HDAC4-209ENST00000487617 PFN2P35080 140 aa12.39□□□□□ -0.43
HDAC4-209ENST00000487617 HSBP1O75506 76 aa12.38□□□□□ -0.43
HDAC4-209ENST00000487617 TRGC2P03986 189 aa12.38□□□□□ -0.43
HDAC4-209ENST00000487617 TRAV12-1A0A0B4J245 112 aa12.37□□□□□ -0.43
HDAC4-209ENST00000487617 NUPR1O60356 82 aa12.37□□□□□ -0.43
HDAC4-209ENST00000487617 HMCN2Q8NDA2 5059 aa12.37□□□□□ -0.43
HDAC4-209ENST00000487617 TNXBP22105 4242 aa12.37□□□□□ -0.43
HDAC4-209ENST00000487617 FAM19A2Q8N3H0 131 aa12.36□□□□□ -0.43
HDAC4-209ENST00000487617 ERG28Q9UKR5 140 aa12.36□□□□□ -0.43
HDAC4-209ENST00000487617 NKAPP1Q8N9T2 125 aa12.35□□□□□ -0.43
HDAC4-209ENST00000487617 ZNF625Q96I27 306 aaPredicted RBP12.35□□□□□ -0.43
HDAC4-209ENST00000487617 LINC00167Q96N53 147 aa12.35□□□□□ -0.43
HDAC4-209ENST00000487617 IGLV5-37A0A075B6J1 123 aa12.34□□□□□ -0.43
HDAC4-209ENST00000487617 GAGE10A6NGK3 116 aa12.34□□□□□ -0.43
HDAC4-209ENST00000487617 RPL37AP8A6NKH3 93 aa12.34□□□□□ -0.43
HDAC4-209ENST00000487617 ZNF861PO60384 105 aa12.33□□□□□ -0.44
HDAC4-209ENST00000487617 SFTA2Q6UW10 78 aa12.33□□□□□ -0.44
HDAC4-209ENST00000487617 PRR26Q8N8Z3 221 aa12.33□□□□□ -0.44
HDAC4-209ENST00000487617 TMEM223A0PJW6 202 aa12.32□□□□□ -0.44
HDAC4-209ENST00000487617 COX17Q14061 63 aa12.32□□□□□ -0.44
HDAC4-209ENST00000487617 SND1-IT1Q9HBX3 110 aa12.32□□□□□ -0.44
HDAC4-209ENST00000487617 BCE1O60756 84 aa12.31□□□□□ -0.44
HDAC4-209ENST00000487617 SERF1AO75920 110 aa12.3□□□□□ -0.44
HDAC4-209ENST00000487617 KRTAP1-4P0C5Y4 121 aa12.3□□□□□ -0.44
HDAC4-209ENST00000487617 H0Y8G0 127 aa12.29□□□□□ -0.44
HDAC4-209ENST00000487617 IGLV1-50A0A075B6I6 118 aa12.28□□□□□ -0.44
HDAC4-209ENST00000487617 COLCA2A8K830 154 aa12.28□□□□□ -0.44
HDAC4-209ENST00000487617 SCO1O75880 301 aa12.28□□□□□ -0.44
HDAC4-209ENST00000487617 LEPROTL1O95214 131 aa12.28□□□□□ -0.44
HDAC4-209ENST00000487617 RPL28P46779 137 aaKnown RBP12.28□□□□□ -0.44
HDAC4-209ENST00000487617 LINC00310P59036 64 aa12.28□□□□□ -0.44
HDAC4-209ENST00000487617 VPREB1P12018 145 aa12.26□□□□□ -0.45
HDAC4-209ENST00000487617 LINC00158P58513 81 aa12.26□□□□□ -0.45
HDAC4-209ENST00000487617 RPL24P83731 157 aaKnown RBP12.26□□□□□ -0.45
HDAC4-209ENST00000487617 IGKV2-28A0A075B6P5 120 aa12.25□□□□□ -0.45
HDAC4-209ENST00000487617 IGKV2D-28P01615 120 aa12.25□□□□□ -0.45
HDAC4-209ENST00000487617 A0A0U1RRA0 63 aa12.23□□□□□ -0.45
HDAC4-209ENST00000487617 HSPB8Q9UJY1 196 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 161.6 ms