RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SPINK8P0C7L1 97 aa11.23□□□□□ -0.61
VIM-205ENST00000485947 NMUP48645 174 aa11.22□□□□□ -0.61
VIM-205ENST00000485947 C5orf38Q86SI9 138 aa11.22□□□□□ -0.61
VIM-205ENST00000485947 IGKV2D-24A0A075B6R9 120 aa11.21□□□□□ -0.61
VIM-205ENST00000485947 IGKV2D-26A0A0A0MRZ7 120 aa11.21□□□□□ -0.61
VIM-205ENST00000485947 KRTAP10-1P60331 282 aa11.21□□□□□ -0.61
VIM-205ENST00000485947 KRTAP26-1Q6PEX3 210 aa11.21□□□□□ -0.61
VIM-205ENST00000485947 APOBP04114 4563 aaKnown RBP11.21□□□□□ -0.62
VIM-205ENST00000485947 TSTD3H0UI37 97 aa11.2□□□□□ -0.62
VIM-205ENST00000485947 J3QQQ9 107 aa11.2□□□□□ -0.62
VIM-205ENST00000485947 APOMO95445 188 aa11.2□□□□□ -0.62
VIM-205ENST00000485947 COX8AP10176 69 aa11.2□□□□□ -0.62
VIM-205ENST00000485947 MALP21145 153 aa11.2□□□□□ -0.62
VIM-205ENST00000485947 XGP55808 180 aa11.2□□□□□ -0.62
VIM-205ENST00000485947 DNAH5Q8TE73 4624 aa11.2□□□□□ -0.62
VIM-205ENST00000485947 IGHV3-64A0A075B6Q5 118 aa11.19□□□□□ -0.62
VIM-205ENST00000485947 LGALS3P17931 250 aaKnown RBP11.19□□□□□ -0.62
VIM-205ENST00000485947 DLEU1O43261 78 aa11.18□□□□□ -0.62
VIM-205ENST00000485947 SLC25A34Q6PIV7 304 aa11.18□□□□□ -0.62
VIM-205ENST00000485947 EPM2AB3EWF7 344 aa11.17□□□□□ -0.62
VIM-205ENST00000485947 FUSP35637 526 aaKnown RBP eCLIP11.17□□□□□ -0.62
VIM-205ENST00000485947 BOD1L2Q8IYS8 172 aa11.17□□□□□ -0.62
VIM-205ENST00000485947 C14orf144Q96I85 54 aa11.17□□□□□ -0.62
VIM-205ENST00000485947 PRO1933Q9H354 126 aa11.17□□□□□ -0.62
VIM-205ENST00000485947 UQCR10Q9UDW1 63 aa11.17□□□□□ -0.62
VIM-205ENST00000485947 TSPEAR-AS2P59090 65 aa11.16□□□□□ -0.62
VIM-205ENST00000485947 Q8IZM0 81 aa11.16□□□□□ -0.62
VIM-205ENST00000485947 COX7B2Q8TF08 81 aa11.16□□□□□ -0.62
VIM-205ENST00000485947 C14orf177Q52M58 125 aa11.15□□□□□ -0.62
VIM-205ENST00000485947 SFTA2Q6UW10 78 aa11.15□□□□□ -0.62
VIM-205ENST00000485947 PCP2Q8IVA1 136 aa11.15□□□□□ -0.62
VIM-205ENST00000485947 ORAOV1Q8WV07 137 aa11.15□□□□□ -0.62
VIM-205ENST00000485947 MYMXA0A1B0GTQ4 84 aa11.14□□□□□ -0.63
VIM-205ENST00000485947 ZNF815PA8K554 130 aa11.14□□□□□ -0.63
VIM-205ENST00000485947 PRSS2P07478 247 aa11.14□□□□□ -0.63
VIM-205ENST00000485947 CFAP161Q6P656 301 aa11.14□□□□□ -0.63
VIM-205ENST00000485947 MIEN1Q9BRT3 115 aa11.14□□□□□ -0.63
VIM-205ENST00000485947 TOMM7Q9P0U1 55 aa11.14□□□□□ -0.63
VIM-205ENST00000485947 CXCL5P42830 114 aa11.13□□□□□ -0.63
VIM-205ENST00000485947 TTTY13Q9BZ97 58 aa11.13□□□□□ -0.63
VIM-205ENST00000485947 NDUFA12Q9UI09 145 aa11.13□□□□□ -0.63
VIM-205ENST00000485947 NDUFA1O15239 70 aa11.12□□□□□ -0.63
VIM-205ENST00000485947 WFDC2Q14508 124 aa11.12□□□□□ -0.63
VIM-205ENST00000485947 HERV-K104P63124 156 aa11.11□□□□□ -0.63
VIM-205ENST00000485947 SPAG11BQ08648 103 aa11.11□□□□□ -0.63
VIM-205ENST00000485947 KIAA0087Q14695 138 aa11.11□□□□□ -0.63
VIM-205ENST00000485947 C6orf226Q5I0X4 101 aa11.11□□□□□ -0.63
VIM-205ENST00000485947 Q6ZSA8 131 aa11.1□□□□□ -0.63
VIM-205ENST00000485947 C15orf56Q8N910 161 aa11.1□□□□□ -0.63
VIM-205ENST00000485947 ZNF625Q96I27 306 aaPredicted RBP11.1□□□□□ -0.63
VIM-205ENST00000485947 F8WDY8 70 aa11.09□□□□□ -0.63
VIM-205ENST00000485947 FAM229AH3BQW9 127 aa11.09□□□□□ -0.63
VIM-205ENST00000485947 GVQW2A0A096LPI5 108 aaPredicted RBP11.08□□□□□ -0.64
VIM-205ENST00000485947 ZNF561-AS1K7EIQ3 104 aa11.08□□□□□ -0.64
VIM-205ENST00000485947 LECT2O14960 151 aa11.08□□□□□ -0.64
VIM-205ENST00000485947 HNRNPA3P51991 378 aaKnown RBP11.08□□□□□ -0.64
VIM-205ENST00000485947 SCGB1D4Q6XE38 83 aa11.08□□□□□ -0.64
VIM-205ENST00000485947 HIGD1BQ9P298 99 aa11.08□□□□□ -0.64
VIM-205ENST00000485947 CKS1BP61024 79 aa11.07□□□□□ -0.64
VIM-205ENST00000485947 Q5VSD8 79 aa11.07□□□□□ -0.64
VIM-205ENST00000485947 C2orf48Q96LS8 159 aa11.07□□□□□ -0.64
VIM-205ENST00000485947 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.06□□□□□ -0.64
VIM-205ENST00000485947 USP17L23D6RBM5 183 aa11.06□□□□□ -0.64
VIM-205ENST00000485947 DDTP30046 118 aa11.06□□□□□ -0.64
VIM-205ENST00000485947 C2orf91Q6ZV80 131 aa11.06□□□□□ -0.64
VIM-205ENST00000485947 TP73-AS1Q9UF72 201 aa11.06□□□□□ -0.64
VIM-205ENST00000485947 A0A0J9YXY3 114 aa11.05□□□□□ -0.64
VIM-205ENST00000485947 LINC00587B1AMM8 73 aa11.05□□□□□ -0.64
VIM-205ENST00000485947 TIMM17BO60830 172 aa11.05□□□□□ -0.64
VIM-205ENST00000485947 HIGD2BQ4VC39 106 aa11.04□□□□□ -0.64
VIM-205ENST00000485947 FAM30AQ9NZY2 134 aa11.04□□□□□ -0.64
VIM-205ENST00000485947 TMEM238C9JI98 176 aa11.03□□□□□ -0.64
VIM-205ENST00000485947 INAFM2P0DMQ5 153 aa11.03□□□□□ -0.64
VIM-205ENST00000485947 MYCBP2O75592 4640 aa11.02□□□□□ -0.65
VIM-205ENST00000485947 UBR4Q5T4S7 5183 aa11.02□□□□□ -0.65
VIM-205ENST00000485947 CIRBPQ14011 172 aaKnown RBP11.02□□□□□ -0.65
VIM-205ENST00000485947 MEIG1Q5JSS6 88 aa11.02□□□□□ -0.65
VIM-205ENST00000485947 C2orf82Q6UX34 121 aa11.02□□□□□ -0.65
VIM-205ENST00000485947 CAMK2N2Q96S95 79 aa11.02□□□□□ -0.65
VIM-205ENST00000485947 SPANXB1Q9NS25 103 aaPredicted RBP11.02□□□□□ -0.65
VIM-205ENST00000485947 TRBV30A0A0K0K1B3 111 aa11.01□□□□□ -0.65
VIM-205ENST00000485947 PCP4L1A6NKN8 68 aa11.01□□□□□ -0.65
VIM-205ENST00000485947 SMR3BP02814 79 aaPredicted RBP11.01□□□□□ -0.65
VIM-205ENST00000485947 TAL2Q16559 108 aa11.01□□□□□ -0.65
VIM-205ENST00000485947 SRRM2Q9UQ35 2752 aaKnown RBP11□□□□□ -0.65
VIM-205ENST00000485947 Q6ZVH6 145 aa11□□□□□ -0.65
VIM-205ENST00000485947 LINC00526Q96FQ7 95 aa11□□□□□ -0.65
VIM-205ENST00000485947 PLA2G1BP04054 148 aaKnown RBP10.99□□□□□ -0.65
VIM-205ENST00000485947 HSD52Q0P140 79 aa10.99□□□□□ -0.65
VIM-205ENST00000485947 COX17Q14061 63 aa10.99□□□□□ -0.65
VIM-205ENST00000485947 UNQ6190/PRO20217Q6UXQ8 127 aa10.99□□□□□ -0.65
VIM-205ENST00000485947 LITAFQ99732 161 aa10.99□□□□□ -0.65
VIM-205ENST00000485947 SPANXDQ9BXN6 97 aa10.99□□□□□ -0.65
VIM-205ENST00000485947 SPANXCQ9NY87 97 aa10.99□□□□□ -0.65
VIM-205ENST00000485947 ERG28Q9UKR5 140 aa10.99□□□□□ -0.65
VIM-205ENST00000485947 FLG2Q5D862 2391 aaPredicted RBP10.98□□□□□ -0.65
VIM-205ENST00000485947 SYCNQ0VAF6 134 aa10.98□□□□□ -0.65
VIM-205ENST00000485947 CTAG1AP78358 180 aa10.97□□□□□ -0.65
VIM-205ENST00000485947 RNF151Q2KHN1 245 aa10.97□□□□□ -0.65
VIM-205ENST00000485947 C10orf25Q5T742 122 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms