RNA–Protein interactions for RNA: ENST00000482647.5

SEC13-217, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-217ENST00000482647 S100A1P23297 94 aa13.27□□□□□ -0.29
SEC13-217ENST00000482647 PTTG1IPP53801 180 aa13.27□□□□□ -0.29
SEC13-217ENST00000482647 GAGE2BQ13066 116 aa13.27□□□□□ -0.29
SEC13-217ENST00000482647 C2orf82Q6UX34 121 aa13.27□□□□□ -0.29
SEC13-217ENST00000482647 PLAC8Q9NZF1 115 aa13.27□□□□□ -0.29
SEC13-217ENST00000482647 C6orf48Q9UBA6 75 aa13.27□□□□□ -0.29
SEC13-217ENST00000482647 TRBV30A0A0K0K1B3 111 aa13.26□□□□□ -0.29
SEC13-217ENST00000482647 SMIM1B2RUZ4 78 aa13.26□□□□□ -0.29
SEC13-217ENST00000482647 LINC00310P59036 64 aa13.26□□□□□ -0.29
SEC13-217ENST00000482647 STPG4Q8N801 248 aa13.26□□□□□ -0.29
SEC13-217ENST00000482647 TRAV12-1A0A0B4J245 112 aa13.24□□□□□ -0.29
SEC13-217ENST00000482647 SPINK8P0C7L1 97 aa13.24□□□□□ -0.29
SEC13-217ENST00000482647 RPL18AQ02543 176 aaKnown RBP13.24□□□□□ -0.29
SEC13-217ENST00000482647 CHTOPQ9Y3Y2 248 aaKnown RBP13.24□□□□□ -0.29
SEC13-217ENST00000482647 LEPROTL1O95214 131 aa13.23□□□□□ -0.29
SEC13-217ENST00000482647 TLX1NBP0CAT3 122 aa13.23□□□□□ -0.29
SEC13-217ENST00000482647 NUPR1O60356 82 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BKO60814 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BJP06899 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BOP23527 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BBP33778 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 CXCL5P42830 114 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BDP58876 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BCP62807 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST2H2BEQ16778 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.22□□□□□ -0.29
SEC13-217ENST00000482647 COX7B2Q8TF08 81 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BHQ93079 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BNQ99877 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 HIST1H2BMQ99879 126 aa13.22□□□□□ -0.29
SEC13-217ENST00000482647 ZNF22P17026 224 aaPredicted RBP13.21□□□□□ -0.29
SEC13-217ENST00000482647 C11orf86A6NJI1 115 aa13.2□□□□□ -0.3
SEC13-217ENST00000482647 F8VRH5 84 aa13.2□□□□□ -0.3
SEC13-217ENST00000482647 HSPB8Q9UJY1 196 aa13.2□□□□□ -0.3
SEC13-217ENST00000482647 NDUFC2-KCTD14E9PQ53 114 aa13.19□□□□□ -0.3
SEC13-217ENST00000482647 ATP6V1G1O75348 118 aa13.19□□□□□ -0.3
SEC13-217ENST00000482647 INAFM2P0DMQ5 153 aa13.19□□□□□ -0.3
SEC13-217ENST00000482647 TMEM170BQ5T4T1 132 aa13.19□□□□□ -0.3
SEC13-217ENST00000482647 Q6ZRP5 223 aa13.19□□□□□ -0.3
SEC13-217ENST00000482647 IGLV5-39A0A0G2JS06 123 aa13.17□□□□□ -0.3
SEC13-217ENST00000482647 FABP4P15090 132 aa13.17□□□□□ -0.3
SEC13-217ENST00000482647 RPL37AP61513 92 aaKnown RBP13.17□□□□□ -0.3
SEC13-217ENST00000482647 GAGE2EQ4V326 116 aa13.17□□□□□ -0.3
SEC13-217ENST00000482647 C9orf116Q5BN46 136 aaPredicted RBP13.17□□□□□ -0.3
SEC13-217ENST00000482647 C7orf33Q8WU49 177 aa13.17□□□□□ -0.3
SEC13-217ENST00000482647 GAGE2DQ9UEU5 116 aa13.17□□□□□ -0.3
SEC13-217ENST00000482647 H0Y8G0 127 aa13.15□□□□□ -0.3
SEC13-217ENST00000482647 A0A1W2PNN7 141 aa13.14□□□□□ -0.31
SEC13-217ENST00000482647 KRTAP10-4P60372 401 aaPredicted RBP13.12□□□□□ -0.31
SEC13-217ENST00000482647 ODF1Q14990 250 aa13.12□□□□□ -0.31
SEC13-217ENST00000482647 MAP1LC3CQ9BXW4 147 aa13.11□□□□□ -0.31
SEC13-217ENST00000482647 TMEM223A0PJW6 202 aa13.1□□□□□ -0.31
SEC13-217ENST00000482647 PLNP26678 52 aa13.09□□□□□ -0.31
SEC13-217ENST00000482647 FAM168BA1KXE4 195 aa13.08□□□□□ -0.32
SEC13-217ENST00000482647 COA6Q5JTJ3 125 aaKnown RBP13.08□□□□□ -0.32
SEC13-217ENST00000482647 SFTA2Q6UW10 78 aa13.08□□□□□ -0.32
SEC13-217ENST00000482647 C9orf129Q5T035 196 aaKnown RBP13.07□□□□□ -0.32
SEC13-217ENST00000482647 DPM2O94777 84 aa13.05□□□□□ -0.32
SEC13-217ENST00000482647 FAM19A5Q7Z5A7 132 aaPredicted RBP13.05□□□□□ -0.32
SEC13-217ENST00000482647 XAGE1AQ9HD64 81 aa13.05□□□□□ -0.32
SEC13-217ENST00000482647 MYCBP2O75592 4640 aa13.05□□□□□ -0.32
SEC13-217ENST00000482647 PHF5AQ7RTV0 110 aaKnown RBP13.03□□□□□ -0.32
SEC13-217ENST00000482647 PMCHL2Q9BQD1 86 aa13.03□□□□□ -0.32
SEC13-217ENST00000482647 SYS1-DBNDD2H3BUS1 97 aa13.02□□□□□ -0.33
SEC13-217ENST00000482647 IGKCP01834 107 aa13.02□□□□□ -0.33
SEC13-217ENST00000482647 PRR3P79522 188 aaKnown RBP13.02□□□□□ -0.33
SEC13-217ENST00000482647 ZNF625Q96I27 306 aaPredicted RBP13.02□□□□□ -0.33
SEC13-217ENST00000482647 FLG2Q5D862 2391 aaPredicted RBP13.01□□□□□ -0.33
SEC13-217ENST00000482647 PFN2P35080 140 aa13.01□□□□□ -0.33
SEC13-217ENST00000482647 COX17Q14061 63 aa13.01□□□□□ -0.33
SEC13-217ENST00000482647 KRTAP7-1Q8IUC3 87 aa13.01□□□□□ -0.33
SEC13-217ENST00000482647 ERG28Q9UKR5 140 aa13.01□□□□□ -0.33
SEC13-217ENST00000482647 M0QXV9 152 aa12.99□□□□□ -0.33
SEC13-217ENST00000482647 HERVK_113P61574 105 aa12.99□□□□□ -0.33
SEC13-217ENST00000482647 PET117Q6UWS5 81 aa12.98□□□□□ -0.33
SEC13-217ENST00000482647 HNRNPA3P51991 378 aaKnown RBP12.97□□□□□ -0.33
SEC13-217ENST00000482647 SERTAD4-AS1Q5TG53 156 aa12.97□□□□□ -0.33
SEC13-217ENST00000482647 PLEKHB2Q96CS7 222 aa12.97□□□□□ -0.33
SEC13-217ENST00000482647 LEPROTO15243 131 aa12.96□□□□□ -0.33
SEC13-217ENST00000482647 PSORS1C2Q9UIG4 136 aa12.96□□□□□ -0.33
SEC13-217ENST00000482647 C22orf24Q9Y442 160 aa12.96□□□□□ -0.33
SEC13-217ENST00000482647 HERV-K104P63124 156 aa12.95□□□□□ -0.34
SEC13-217ENST00000482647 LBHQ53QV2 105 aaPredicted RBP12.95□□□□□ -0.34
SEC13-217ENST00000482647 LINC01545Q5VT33 79 aa12.95□□□□□ -0.34
SEC13-217ENST00000482647 NDUFA12Q9UI09 145 aa12.95□□□□□ -0.34
SEC13-217ENST00000482647 PKHD1L1Q86WI1 4243 aa12.94□□□□□ -0.34
SEC13-217ENST00000482647 MYMXA0A1B0GTQ4 84 aa12.94□□□□□ -0.34
SEC13-217ENST00000482647 C3orf79P0CE67 100 aa12.94□□□□□ -0.34
SEC13-217ENST00000482647 LINC00158P58513 81 aa12.94□□□□□ -0.34
SEC13-217ENST00000482647 UBE2BP63146 152 aa12.94□□□□□ -0.34
SEC13-217ENST00000482647 PLA2G2DQ9UNK4 145 aa12.94□□□□□ -0.34
SEC13-217ENST00000482647 LINC00587B1AMM8 73 aa12.93□□□□□ -0.34
SEC13-217ENST00000482647 KRTDAPP60985 99 aa12.93□□□□□ -0.34
SEC13-217ENST00000482647 SND1-IT1Q9HBX3 110 aa12.93□□□□□ -0.34
SEC13-217ENST00000482647 J3QQQ9 107 aa12.92□□□□□ -0.34
SEC13-217ENST00000482647 TP73-AS1Q9UF72 201 aa12.92□□□□□ -0.34
SEC13-217ENST00000482647 TSPEAR-AS2P59090 65 aa12.91□□□□□ -0.34
SEC13-217ENST00000482647 C1orf137Q5JT78 98 aa12.91□□□□□ -0.34
SEC13-217ENST00000482647 LGALS3P17931 250 aaKnown RBP12.9□□□□□ -0.34
SEC13-217ENST00000482647 MEIG1Q5JSS6 88 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms