RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 C2orf88Q9BSF0 95 aa4.35□□□□□ -1.71
SCN9A-206ENST00000472119 DYNC1H1Q14204 4646 aaKnown RBP4.34□□□□□ -1.71
SCN9A-206ENST00000472119 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.34□□□□□ -1.71
SCN9A-206ENST00000472119 COX7A2LO14548 114 aa4.34□□□□□ -1.71
SCN9A-206ENST00000472119 NUPR1O60356 82 aa4.34□□□□□ -1.71
SCN9A-206ENST00000472119 HSBP1O75506 76 aa4.34□□□□□ -1.71
SCN9A-206ENST00000472119 SERF1AO75920 110 aa4.34□□□□□ -1.71
SCN9A-206ENST00000472119 NDUFA6P56556 154 aa4.34□□□□□ -1.71
SCN9A-206ENST00000472119 PAPPA-AS1Q5QFB9 102 aa4.34□□□□□ -1.71
SCN9A-206ENST00000472119 KRTAP7-1Q8IUC3 87 aa4.34□□□□□ -1.71
SCN9A-206ENST00000472119 CHCHD1Q96BP2 118 aaKnown RBP4.34□□□□□ -1.71
SCN9A-206ENST00000472119 CST9LQ9H4G1 147 aa4.34□□□□□ -1.71
SCN9A-206ENST00000472119 IGHV3OR16-9A0A0B4J2B5 98 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 IGHV1-58A0A0C4DH39 117 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 A0A0J9YXV3 536 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 LINC01549A6NIU2 74 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BKO60814 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BJP06899 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BOP23527 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BBP33778 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BDP58876 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BCP62807 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 PMVKQ15126 192 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST2H2BEQ16778 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 PDZD11Q5EBL8 140 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BHQ93079 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BNQ99877 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 HIST1H2BMQ99879 126 aa4.33□□□□□ -1.72
SCN9A-206ENST00000472119 GVQW2A0A096LPI5 108 aaPredicted RBP4.32□□□□□ -1.72
SCN9A-206ENST00000472119 ATP5LO75964 103 aa4.32□□□□□ -1.72
SCN9A-206ENST00000472119 GEMIN7Q9H840 131 aaKnown RBP4.32□□□□□ -1.72
SCN9A-206ENST00000472119 LRP1BQ9NZR2 4599 aa4.32□□□□□ -1.72
SCN9A-206ENST00000472119 DNAH5Q8TE73 4624 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 IGLV4-69A0A075B6H9 119 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 IGHV3-64A0A075B6Q5 118 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 A0A087WZ39 114 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 APOMO95445 188 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 FABP4P15090 132 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 CNBPP62633 177 aaKnown RBP4.31□□□□□ -1.72
SCN9A-206ENST00000472119 FAM19A3Q7Z5A8 133 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 ORAOV1Q8WV07 137 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 IFI27L1Q96BM0 104 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 CDKN2A-AS1Q9UH64 79 aa4.31□□□□□ -1.72
SCN9A-206ENST00000472119 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.3□□□□□ -1.72
SCN9A-206ENST00000472119 TINCRA0A1B0GVN0 87 aa4.3□□□□□ -1.72
SCN9A-206ENST00000472119 HERVK_113P63121 156 aa4.3□□□□□ -1.72
SCN9A-206ENST00000472119 SEC11AP67812 179 aa4.3□□□□□ -1.72
SCN9A-206ENST00000472119 HAMPP81172 84 aa4.3□□□□□ -1.72
SCN9A-206ENST00000472119 SPAG11BQ08648 103 aa4.3□□□□□ -1.72
SCN9A-206ENST00000472119 SYCNQ0VAF6 134 aa4.3□□□□□ -1.72
SCN9A-206ENST00000472119 LINC00469Q8N7U9 141 aa4.3□□□□□ -1.72
SCN9A-206ENST00000472119 C9orf163Q8N9P6 203 aa4.3□□□□□ -1.72
SCN9A-206ENST00000472119 H0Y8G0 127 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 LEPROTL1O95214 131 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 IGLC3P0DOY3 106 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 SDIM1Q6ZPB5 146 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 Q6ZRU5 148 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 OR10D4PQ8NGN7 298 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 CARD19Q96LW7 228 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 CAMK2N2Q96S95 79 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 CHAC1Q9BUX1 264 aa4.29□□□□□ -1.72
SCN9A-206ENST00000472119 CHTOPQ9Y3Y2 248 aaKnown RBP4.29□□□□□ -1.72
SCN9A-206ENST00000472119 BIRC6Q9NR09 4857 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 IGLV5-45A0A087WSX0 123 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 CDK2AP2O75956 126 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 SPINK8P0C7L1 97 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 XGP55808 180 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 KIAA0087Q14695 138 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 C2orf82Q6UX34 121 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 LINC01561Q8N1V8 128 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 C2orf48Q96LS8 159 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 PACRGQ96M98 296 aaPredicted RBP4.28□□□□□ -1.72
SCN9A-206ENST00000472119 TOMM7Q9P0U1 55 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 HSPB8Q9UJY1 196 aa4.28□□□□□ -1.72
SCN9A-206ENST00000472119 TRAV12-1A0A0B4J245 112 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 C11orf86A6NJI1 115 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 SMIM1B2RUZ4 78 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 H3BRM9 83 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 PANO1I0J062 215 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 NDUFA1O15239 70 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 CHTF8P0CG12 524 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 ZNF22P17026 224 aaPredicted RBP4.27□□□□□ -1.73
SCN9A-206ENST00000472119 KRTAP12-2P59991 146 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 C6orf226Q5I0X4 101 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 COA6Q5JTJ3 125 aaKnown RBP4.27□□□□□ -1.73
SCN9A-206ENST00000472119 TMEM170BQ5T4T1 132 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 UNQ6190/PRO20217Q6UXQ8 127 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 DPH3Q96FX2 82 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 MRPL35Q9NZE8 188 aaKnown RBP4.27□□□□□ -1.73
SCN9A-206ENST00000472119 HSPG2P98160 4391 aa4.27□□□□□ -1.73
SCN9A-206ENST00000472119 APOBP04114 4563 aaKnown RBP4.27□□□□□ -1.73
SCN9A-206ENST00000472119 DNAH8Q96JB1 4490 aa4.26□□□□□ -1.73
SCN9A-206ENST00000472119 IGKV2-24A0A0C4DH68 120 aa4.26□□□□□ -1.73
SCN9A-206ENST00000472119 F8VRH5 84 aa4.26□□□□□ -1.73
SCN9A-206ENST00000472119 SMR3BP02814 79 aaPredicted RBP4.26□□□□□ -1.73
SCN9A-206ENST00000472119 CKS1BP61024 79 aa4.26□□□□□ -1.73
SCN9A-206ENST00000472119 Q6ZSA8 131 aa4.26□□□□□ -1.73
SCN9A-206ENST00000472119 SCXQ7RTU7 201 aa4.26□□□□□ -1.73
SCN9A-206ENST00000472119 PMCHL2Q9BQD1 86 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms