RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 C6orf48Q9UBA6 75 aa9.69□□□□□ -0.86
SDC3-203ENST00000471567 FAT1Q14517 4588 aa9.68□□□□□ -0.86
SDC3-203ENST00000471567 TRAV12-1A0A0B4J245 112 aa9.68□□□□□ -0.86
SDC3-203ENST00000471567 TLX1NBP0CAT3 122 aa9.68□□□□□ -0.86
SDC3-203ENST00000471567 LINC00310P59036 64 aa9.68□□□□□ -0.86
SDC3-203ENST00000471567 CKS1BP61024 79 aa9.68□□□□□ -0.86
SDC3-203ENST00000471567 GAGE2BQ13066 116 aa9.68□□□□□ -0.86
SDC3-203ENST00000471567 C2orf82Q6UX34 121 aa9.68□□□□□ -0.86
SDC3-203ENST00000471567 CXCL5P42830 114 aa9.67□□□□□ -0.86
SDC3-203ENST00000471567 STPG4Q8N801 248 aa9.67□□□□□ -0.86
SDC3-203ENST00000471567 RPL18AQ02543 176 aaKnown RBP9.66□□□□□ -0.86
SDC3-203ENST00000471567 COX7B2Q8TF08 81 aa9.66□□□□□ -0.86
SDC3-203ENST00000471567 CHTOPQ9Y3Y2 248 aaKnown RBP9.66□□□□□ -0.86
SDC3-203ENST00000471567 NUPR1O60356 82 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BKO60814 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 LEPROTL1O95214 131 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 S100A6P06703 90 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BJP06899 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 SPINK8P0C7L1 97 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 ZNF22P17026 224 aaPredicted RBP9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BOP23527 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BBP33778 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BDP58876 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BCP62807 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST2H2BEQ16778 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BHQ93079 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BNQ99877 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 HIST1H2BMQ99879 126 aa9.65□□□□□ -0.86
SDC3-203ENST00000471567 C11orf86A6NJI1 115 aa9.64□□□□□ -0.87
SDC3-203ENST00000471567 F8VRH5 84 aa9.64□□□□□ -0.87
SDC3-203ENST00000471567 INAFM2P0DMQ5 153 aa9.64□□□□□ -0.87
SDC3-203ENST00000471567 TMA7Q9Y2S6 64 aaKnown RBP9.64□□□□□ -0.87
SDC3-203ENST00000471567 ABCA13Q86UQ4 5058 aa9.63□□□□□ -0.87
SDC3-203ENST00000471567 IGLV5-39A0A0G2JS06 123 aa9.63□□□□□ -0.87
SDC3-203ENST00000471567 NDUFC2-KCTD14E9PQ53 114 aa9.63□□□□□ -0.87
SDC3-203ENST00000471567 Q6ZRP5 223 aa9.63□□□□□ -0.87
SDC3-203ENST00000471567 HSPB8Q9UJY1 196 aa9.63□□□□□ -0.87
SDC3-203ENST00000471567 VPS13BQ7Z7G8 4022 aa9.63□□□□□ -0.87
SDC3-203ENST00000471567 RPL37AP61513 92 aaKnown RBP9.62□□□□□ -0.87
SDC3-203ENST00000471567 TMEM170BQ5T4T1 132 aa9.62□□□□□ -0.87
SDC3-203ENST00000471567 C7orf33Q8WU49 177 aa9.62□□□□□ -0.87
SDC3-203ENST00000471567 KRTAP10-4P60372 401 aaPredicted RBP9.61□□□□□ -0.87
SDC3-203ENST00000471567 C9orf116Q5BN46 136 aaPredicted RBP9.61□□□□□ -0.87
SDC3-203ENST00000471567 PCLOQ9Y6V0 5065 aa9.6□□□□□ -0.87
SDC3-203ENST00000471567 SRRM2Q9UQ35 2752 aaKnown RBP9.6□□□□□ -0.87
SDC3-203ENST00000471567 GAGE2EQ4V326 116 aa9.6□□□□□ -0.87
SDC3-203ENST00000471567 COA6Q5JTJ3 125 aaKnown RBP9.6□□□□□ -0.87
SDC3-203ENST00000471567 GAGE2DQ9UEU5 116 aa9.6□□□□□ -0.87
SDC3-203ENST00000471567 A0A1W2PNN7 141 aa9.59□□□□□ -0.87
SDC3-203ENST00000471567 FABP4P15090 132 aa9.59□□□□□ -0.87
SDC3-203ENST00000471567 ODF1Q14990 250 aa9.59□□□□□ -0.87
SDC3-203ENST00000471567 TMEM223A0PJW6 202 aa9.57□□□□□ -0.88
SDC3-203ENST00000471567 H0Y8G0 127 aa9.57□□□□□ -0.88
SDC3-203ENST00000471567 SFTA2Q6UW10 78 aa9.57□□□□□ -0.88
SDC3-203ENST00000471567 MAP1LC3CQ9BXW4 147 aa9.56□□□□□ -0.88
SDC3-203ENST00000471567 PLNP26678 52 aa9.55□□□□□ -0.88
SDC3-203ENST00000471567 C9orf129Q5T035 196 aaKnown RBP9.55□□□□□ -0.88
SDC3-203ENST00000471567 S100A2P29034 98 aa9.54□□□□□ -0.88
SDC3-203ENST00000471567 FAM168BA1KXE4 195 aa9.53□□□□□ -0.88
SDC3-203ENST00000471567 C5orf52A6NGY3 159 aa9.53□□□□□ -0.88
SDC3-203ENST00000471567 DPM2O94777 84 aa9.53□□□□□ -0.88
SDC3-203ENST00000471567 SNRPEP62304 92 aaKnown RBP9.53□□□□□ -0.88
SDC3-203ENST00000471567 ZNF625Q96I27 306 aaPredicted RBP9.52□□□□□ -0.89
SDC3-203ENST00000471567 PRR3P79522 188 aaKnown RBP9.51□□□□□ -0.89
SDC3-203ENST00000471567 COX17Q14061 63 aa9.51□□□□□ -0.89
SDC3-203ENST00000471567 PHF5AQ7RTV0 110 aaKnown RBP9.51□□□□□ -0.89
SDC3-203ENST00000471567 FAM19A5Q7Z5A7 132 aaPredicted RBP9.51□□□□□ -0.89
SDC3-203ENST00000471567 KRTAP7-1Q8IUC3 87 aa9.51□□□□□ -0.89
SDC3-203ENST00000471567 XAGE1AQ9HD64 81 aa9.51□□□□□ -0.89
SDC3-203ENST00000471567 FLG2Q5D862 2391 aaPredicted RBP9.51□□□□□ -0.89
SDC3-203ENST00000471567 SYS1-DBNDD2H3BUS1 97 aa9.5□□□□□ -0.89
SDC3-203ENST00000471567 IGKCP01834 107 aa9.5□□□□□ -0.89
SDC3-203ENST00000471567 HIST3H2BBQ8N257 126 aa9.5□□□□□ -0.89
SDC3-203ENST00000471567 ERG28Q9UKR5 140 aa9.5□□□□□ -0.89
SDC3-203ENST00000471567 PMCHL2Q9BQD1 86 aa9.49□□□□□ -0.89
SDC3-203ENST00000471567 M0QXV9 152 aa9.48□□□□□ -0.89
SDC3-203ENST00000471567 PFN2P35080 140 aa9.48□□□□□ -0.89
SDC3-203ENST00000471567 HNRNPA3P51991 378 aaKnown RBP9.48□□□□□ -0.89
SDC3-203ENST00000471567 HERVK_113P61574 105 aa9.48□□□□□ -0.89
SDC3-203ENST00000471567 PET117Q6UWS5 81 aa9.48□□□□□ -0.89
SDC3-203ENST00000471567 PLA2G2DQ9UNK4 145 aa9.48□□□□□ -0.89
SDC3-203ENST00000471567 LEPROTO15243 131 aa9.47□□□□□ -0.89
SDC3-203ENST00000471567 HERV-K104P63124 156 aa9.47□□□□□ -0.89
SDC3-203ENST00000471567 SERTAD4-AS1Q5TG53 156 aa9.47□□□□□ -0.89
SDC3-203ENST00000471567 PLEKHB2Q96CS7 222 aa9.47□□□□□ -0.89
SDC3-203ENST00000471567 LBHQ53QV2 105 aaPredicted RBP9.46□□□□□ -0.9
SDC3-203ENST00000471567 LINC01545Q5VT33 79 aa9.46□□□□□ -0.9
SDC3-203ENST00000471567 TP73-AS1Q9UF72 201 aa9.46□□□□□ -0.9
SDC3-203ENST00000471567 PSORS1C2Q9UIG4 136 aa9.46□□□□□ -0.9
SDC3-203ENST00000471567 C22orf24Q9Y442 160 aa9.46□□□□□ -0.9
SDC3-203ENST00000471567 MYMXA0A1B0GTQ4 84 aa9.45□□□□□ -0.9
SDC3-203ENST00000471567 LINC00587B1AMM8 73 aa9.45□□□□□ -0.9
SDC3-203ENST00000471567 NDUFA12Q9UI09 145 aa9.45□□□□□ -0.9
SDC3-203ENST00000471567 C3orf79P0CE67 100 aa9.44□□□□□ -0.9
SDC3-203ENST00000471567 UBE2BP63146 152 aa9.44□□□□□ -0.9
SDC3-203ENST00000471567 HIST1H2BLQ99880 126 aa9.44□□□□□ -0.9
SDC3-203ENST00000471567 SND1-IT1Q9HBX3 110 aa9.44□□□□□ -0.9
SDC3-203ENST00000471567 IGLV5-37A0A075B6J1 123 aa9.43□□□□□ -0.9
SDC3-203ENST00000471567 KRTAP29-1A8MX34 341 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms