RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 RNASE3P12724 160 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-210ENST00000468534 ZCCHC13Q8WW36 166 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-210ENST00000468534 TNRC6BQ9UPQ9 1833 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-210ENST00000468534 C5P01031 1676 aa2.62□□□□□ -1.99
CCDC88A-210ENST00000468534 SLIT1O75093 1534 aa2.62□□□□□ -1.99
CCDC88A-210ENST00000468534 HEATR1Q9H583 2144 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-210ENST00000468534 ANKRD36CQ5JPF3 1778 aa2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 BAZ2BQ9UIF8 2168 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 ARHGAP32A7KAX9 2087 aa2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 FAM208AQ9UK61 1670 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 K7EMI3 77 aa2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 RPL37AP61513 92 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 FXYD3Q14802 87 aa2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 C10orf55Q5SWW7 151 aa2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 LINC00322Q6ZN03 302 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 OBSCN-AS1Q96MR7 158 aa2.61□□□□□ -1.99
CCDC88A-210ENST00000468534 MED12Q93074 2177 aa2.6□□□□□ -1.99
CCDC88A-210ENST00000468534 FMN2Q9NZ56 1722 aa2.6□□□□□ -1.99
CCDC88A-210ENST00000468534 COL14A1Q05707 1796 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-210ENST00000468534 DLEC1Q9Y238 1755 aa2.6□□□□□ -1.99
CCDC88A-210ENST00000468534 IL9P15248 144 aa2.6□□□□□ -1.99
CCDC88A-210ENST00000468534 ENHOQ6UWT2 76 aa2.6□□□□□ -1.99
CCDC88A-210ENST00000468534 C5orf56Q8N8D9 126 aa2.6□□□□□ -1.99
CCDC88A-210ENST00000468534 PI4KAP42356 2102 aa2.6□□□□□ -1.99
CCDC88A-210ENST00000468534 CACNA1DQ01668 2161 aa2.59□□□□□ -1.99
CCDC88A-210ENST00000468534 TRBV6-1A0A0K0K1D8 114 aa2.59□□□□□ -1.99
CCDC88A-210ENST00000468534 SMIM27A0A1W2PRY6 76 aa2.59□□□□□ -1.99
CCDC88A-210ENST00000468534 IGKV2-29A2NJV5 120 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-210ENST00000468534 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
CCDC88A-210ENST00000468534 CAV3P56539 151 aa2.59□□□□□ -1.99
CCDC88A-210ENST00000468534 LINC00472Q9H8W2 130 aa2.59□□□□□ -1.99
CCDC88A-210ENST00000468534 NRXN3Q9Y4C0 1643 aa2.59□□□□□ -1.99
CCDC88A-210ENST00000468534 SHROOM3Q8TF72 1996 aa2.59□□□□□ -2
CCDC88A-210ENST00000468534 MYO7BQ6PIF6 2116 aa2.59□□□□□ -2
CCDC88A-210ENST00000468534 PAPPA2Q9BXP8 1791 aa2.59□□□□□ -2
CCDC88A-210ENST00000468534 ABCC8Q09428 1581 aa2.58□□□□□ -2
CCDC88A-210ENST00000468534 TRGV4A0A0C4DH28 118 aa2.58□□□□□ -2
CCDC88A-210ENST00000468534 C10orf113Q5VZT2 155 aa2.58□□□□□ -2
CCDC88A-210ENST00000468534 LINC00304Q8N9R0 145 aa2.58□□□□□ -2
CCDC88A-210ENST00000468534 TET1Q8NFU7 2136 aa2.58□□□□□ -2
CCDC88A-210ENST00000468534 Q96NJ1 140 aa2.58□□□□□ -2
CCDC88A-210ENST00000468534 ANKRD36A6QL64 1941 aa2.58□□□□□ -2
CCDC88A-210ENST00000468534 ATP7AQ04656 1500 aa2.58□□□□□ -2
CCDC88A-210ENST00000468534 DOT1LQ8TEK3 1739 aa2.57□□□□□ -2
CCDC88A-210ENST00000468534 BCORQ6W2J9 1755 aa2.57□□□□□ -2
CCDC88A-210ENST00000468534 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.57□□□□□ -2
CCDC88A-210ENST00000468534 COX17Q14061 63 aa2.57□□□□□ -2
CCDC88A-210ENST00000468534 WFDC9Q8NEX5 89 aa2.57□□□□□ -2
CCDC88A-210ENST00000468534 UBL5Q9BZL1 73 aa2.57□□□□□ -2
CCDC88A-210ENST00000468534 SPTBP11277 2137 aa2.57□□□□□ -2
CCDC88A-210ENST00000468534 ESPL1Q14674 2120 aa2.57□□□□□ -2
CCDC88A-210ENST00000468534 PRRC2BQ5JSZ5 2229 aaKnown RBP2.57□□□□□ -2
CCDC88A-210ENST00000468534 LY75O60449 1722 aa2.56□□□□□ -2
CCDC88A-210ENST00000468534 PRR14LQ5THK1 2151 aa2.56□□□□□ -2
CCDC88A-210ENST00000468534 LOC110117498A0A087WWA1 95 aa2.56□□□□□ -2
CCDC88A-210ENST00000468534 SERF2P84101 59 aa2.56□□□□□ -2
CCDC88A-210ENST00000468534 TMEM14CQ9P0S9 112 aa2.56□□□□□ -2
CCDC88A-210ENST00000468534 TRGV1A0A0A0MS02 117 aa2.55□□□□□ -2
CCDC88A-210ENST00000468534 TRAV1-2A0A0B4J238 106 aa2.55□□□□□ -2
CCDC88A-210ENST00000468534 IGKV4-1P06312 121 aa2.55□□□□□ -2
CCDC88A-210ENST00000468534 FXYD4P59646 89 aa2.55□□□□□ -2
CCDC88A-210ENST00000468534 SNRPGP62308 76 aaKnown RBP2.55□□□□□ -2
CCDC88A-210ENST00000468534 MROH2BQ7Z745 1585 aa2.55□□□□□ -2
CCDC88A-210ENST00000468534 ARFGEF3Q5TH69 2177 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 KIF21BO75037 1637 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 INE1O15225 51 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 IGLV6-57P01721 117 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 PLNP26678 52 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 LINC00315P59091 139 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 Q8N9L7 120 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 ZNF625Q96I27 306 aaPredicted RBP2.54□□□□□ -2
CCDC88A-210ENST00000468534 GAFA1Q96PS6 74 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 MYO7AQ13402 2215 aa2.54□□□□□ -2
CCDC88A-210ENST00000468534 SPAG17Q6Q759 2223 aa2.53□□□□□ -2
CCDC88A-210ENST00000468534 RP1P56715 2156 aa2.53□□□□□ -2
CCDC88A-210ENST00000468534 LINC00959A0A1B0GUT2 108 aa2.53□□□□□ -2
CCDC88A-210ENST00000468534 ABCA4P78363 2273 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 INTS1Q8N201 2190 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 NRAPQ86VF7 1730 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 IGLV4-60A0A075B6I1 120 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 TRGV2A0A075B6R0 118 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 IGIPA6NJ69 53 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 H3BRN7 92 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 M0R2N4 97 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 DEFB112Q30KQ8 113 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 MDC1Q14676 2089 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 UNC13CQ8NB66 2214 aa2.52□□□□□ -2.01
CCDC88A-210ENST00000468534 LINC01546A6NGU7 62 aa2.51□□□□□ -2.01
CCDC88A-210ENST00000468534 COX6B1P14854 86 aa2.51□□□□□ -2.01
CCDC88A-210ENST00000468534 TULP4Q9NRJ4 1543 aa2.51□□□□□ -2.01
CCDC88A-210ENST00000468534 PCDH15Q96QU1 1955 aa2.5□□□□□ -2.01
CCDC88A-210ENST00000468534 DNAJC13O75165 2243 aa2.5□□□□□ -2.01
CCDC88A-210ENST00000468534 IGKV2D-24A0A075B6R9 120 aa2.5□□□□□ -2.01
CCDC88A-210ENST00000468534 M0R1W7 72 aa2.5□□□□□ -2.01
CCDC88A-210ENST00000468534 IQGAP1P46940 1657 aa2.5□□□□□ -2.01
CCDC88A-210ENST00000468534 DEPDC5O75140 1603 aa2.5□□□□□ -2.01
CCDC88A-210ENST00000468534 CLTCL1P53675 1640 aa2.5□□□□□ -2.01
CCDC88A-210ENST00000468534 COL4A2P08572 1712 aa2.49□□□□□ -2.01
CCDC88A-210ENST00000468534 CEP192Q8TEP8 1941 aa2.49□□□□□ -2.01
CCDC88A-210ENST00000468534 I3L3M4 83 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms