RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 COX17Q14061 63 aa5.05□□□□□ -1.6
USP48-206ENST00000464577 DSCR8Q96T75 97 aa5.05□□□□□ -1.6
USP48-206ENST00000464577 UBL5Q9BZL1 73 aa5.05□□□□□ -1.6
USP48-206ENST00000464577 CCL24O00175 119 aa5.04□□□□□ -1.6
USP48-206ENST00000464577 HILS1P60008 231 aa5.04□□□□□ -1.6
USP48-206ENST00000464577 CSNK1G2-AS1Q8NCQ2 148 aa5.04□□□□□ -1.6
USP48-206ENST00000464577 CSPG4Q6UVK1 2322 aa5.04□□□□□ -1.6
USP48-206ENST00000464577 LOC110117498A0A087WWA1 95 aa5.04□□□□□ -1.6
USP48-206ENST00000464577 Q8N3U1 123 aa5.04□□□□□ -1.6
USP48-206ENST00000464577 KRTAP4-7Q9BYR0 210 aa5.04□□□□□ -1.6
USP48-206ENST00000464577 C11orf68Q9H3H3 251 aaKnown RBP5.04□□□□□ -1.6
USP48-206ENST00000464577 CREBBPQ92793 2442 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 XCL1P47992 114 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 ENHOQ6UWT2 76 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 LINC00612Q8N6U2 182 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 C19orf73Q9NVV2 129 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 TRAV23DV6A0A075B6W5 121 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 IGHV4-28A0A0C4DH34 117 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 KIAA0087Q14695 138 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 FAM19A1Q7Z5A9 133 aa5.03□□□□□ -1.6
USP48-206ENST00000464577 H3BQ85 93 aa5.02□□□□□ -1.61
USP48-206ENST00000464577 ZNF561-AS1K7EIQ3 104 aa5.02□□□□□ -1.61
USP48-206ENST00000464577 RPL35AP18077 110 aaKnown RBP5.02□□□□□ -1.61
USP48-206ENST00000464577 Q5XG85 94 aa5.02□□□□□ -1.61
USP48-206ENST00000464577 LINC00575Q6W349 94 aa5.02□□□□□ -1.61
USP48-206ENST00000464577 Q6ZQT0 140 aa5.02□□□□□ -1.61
USP48-206ENST00000464577 C6orf223Q8N319 242 aa5.02□□□□□ -1.61
USP48-206ENST00000464577 MUC7Q8TAX7 377 aa5.02□□□□□ -1.61
USP48-206ENST00000464577 WFDC9Q8NEX5 89 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 CR1P17927 2039 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 TRAV7A0A075B6U4 112 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 FAM236DA0A1B0GTK5 79 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 EPM2AB3EWF7 344 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 IGLV1-51P01701 117 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 FAM236CP0DP71 79 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 PRR3P79522 188 aaKnown RBP5.01□□□□□ -1.61
USP48-206ENST00000464577 RBM3P98179 157 aaKnown RBP5.01□□□□□ -1.61
USP48-206ENST00000464577 C6orf99Q4VX62 202 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 CD164L2Q6UWJ8 174 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 WFDC10AQ9H1F0 79 aa5.01□□□□□ -1.61
USP48-206ENST00000464577 GYPEP15421 78 aa5□□□□□ -1.61
USP48-206ENST00000464577 PDE6GP18545 87 aa5□□□□□ -1.61
USP48-206ENST00000464577 LINC00482Q8N8I6 264 aa5□□□□□ -1.61
USP48-206ENST00000464577 DNAJC9-AS1A6NH13 148 aa5□□□□□ -1.61
USP48-206ENST00000464577 C9orf66Q5T8R8 295 aa5□□□□□ -1.61
USP48-206ENST00000464577 C20orf197Q8N268 126 aa5□□□□□ -1.61
USP48-206ENST00000464577 DOPEY1Q5JWR5 2465 aa4.99□□□□□ -1.61
USP48-206ENST00000464577 PLA2G2AP14555 144 aa4.99□□□□□ -1.61
USP48-206ENST00000464577 SERP1Q9Y6X1 66 aa4.99□□□□□ -1.61
USP48-206ENST00000464577 LINC01547P58512 204 aaPredicted RBP4.98□□□□□ -1.61
USP48-206ENST00000464577 CXCL6P80162 114 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 KLKP1Q107X0 134 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 C4orf26Q17RF5 130 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 DEFB113Q30KQ7 82 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 CHCHD10Q8WYQ3 142 aaPredicted RBP4.98□□□□□ -1.61
USP48-206ENST00000464577 PRO0255Q9UI72 69 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 VPS13CQ709C8 3753 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 H7BZZ5 65 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 DEFB130BP0DP73 79 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 DEFB130AP0DP74 79 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 CLPSL2Q6UWE3 100 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 Q6ZVQ6 151 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 Q8NDZ9 215 aa4.98□□□□□ -1.61
USP48-206ENST00000464577 IGLV6-57P01721 117 aa4.97□□□□□ -1.61
USP48-206ENST00000464577 LAMTOR3Q9UHA4 124 aa4.97□□□□□ -1.61
USP48-206ENST00000464577 SPG11Q96JI7 2443 aa4.97□□□□□ -1.61
USP48-206ENST00000464577 COL12A1Q99715 3063 aa4.97□□□□□ -1.61
USP48-206ENST00000464577 ITPR1Q14643 2758 aa4.97□□□□□ -1.61
USP48-206ENST00000464577 RNASE1P07998 156 aaKnown RBP4.96□□□□□ -1.61
USP48-206ENST00000464577 HRCT1Q6UXD1 115 aa4.96□□□□□ -1.61
USP48-206ENST00000464577 LINC00269Q8N2A0 174 aa4.96□□□□□ -1.61
USP48-206ENST00000464577 C16orf95Q9H693 158 aa4.96□□□□□ -1.61
USP48-206ENST00000464577 CRYBG3Q68DQ2 2970 aa4.96□□□□□ -1.61
USP48-206ENST00000464577 A0A0J9YWU9 116 aa4.96□□□□□ -1.62
USP48-206ENST00000464577 IGHV4-30-4P0DP06 118 aa4.96□□□□□ -1.62
USP48-206ENST00000464577 C9orf116Q5BN46 136 aaPredicted RBP4.96□□□□□ -1.62
USP48-206ENST00000464577 BBC3Q96PG8 261 aaPredicted RBP4.96□□□□□ -1.62
USP48-206ENST00000464577 REG3AQ06141 175 aa4.95□□□□□ -1.62
USP48-206ENST00000464577 ESM1Q9NQ30 184 aa4.95□□□□□ -1.62
USP48-206ENST00000464577 M0R2N4 97 aa4.95□□□□□ -1.62
USP48-206ENST00000464577 NDUFC1O43677 76 aa4.95□□□□□ -1.62
USP48-206ENST00000464577 HAMPP81172 84 aa4.95□□□□□ -1.62
USP48-206ENST00000464577 X6R8D5 127 aa4.95□□□□□ -1.62
USP48-206ENST00000464577 CELSR2Q9HCU4 2923 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 GVQW2A0A096LPI5 108 aaPredicted RBP4.94□□□□□ -1.62
USP48-206ENST00000464577 TRAV10A0A0B4J240 114 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 TRBV7-4A0A0J9YYF1 115 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 LYRM9A8MSI8 78 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 ANGP03950 147 aaKnown RBP4.94□□□□□ -1.62
USP48-206ENST00000464577 ATP5EP56381 51 aaPredicted RBP4.94□□□□□ -1.62
USP48-206ENST00000464577 KRTAP10-9P60411 292 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 SPAG11BQ08648 103 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.94□□□□□ -1.62
USP48-206ENST00000464577 Q6ZQY7 126 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 ZNF843Q8N446 348 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 LINC01006Q8NI28 216 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 MRAPQ8TCY5 172 aa4.94□□□□□ -1.62
USP48-206ENST00000464577 DIRC1Q969H9 104 aa4.93□□□□□ -1.62
USP48-206ENST00000464577 ANKRD17O75179 2603 aaKnown RBP4.93□□□□□ -1.62
USP48-206ENST00000464577 IGLV10-54A0A075B6I4 117 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms