RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 CST9LQ9H4G1 147 aa14.28□□□□□ -0.12
PTPN4-208ENST00000460289 GAGE2DQ9UEU5 116 aa14.28□□□□□ -0.12
PTPN4-208ENST00000460289 TINCRA0A1B0GVN0 87 aa14.27□□□□□ -0.13
PTPN4-208ENST00000460289 NDUFC2-KCTD14E9PQ53 114 aa14.27□□□□□ -0.13
PTPN4-208ENST00000460289 PMVKQ15126 192 aa14.26□□□□□ -0.13
PTPN4-208ENST00000460289 SPINK6Q6UWN8 80 aa14.26□□□□□ -0.13
PTPN4-208ENST00000460289 LINC00469Q8N7U9 141 aa14.26□□□□□ -0.13
PTPN4-208ENST00000460289 LINC00614P0C842 121 aa14.25□□□□□ -0.13
PTPN4-208ENST00000460289 SERTAD4-AS1Q5TG53 156 aa14.25□□□□□ -0.13
PTPN4-208ENST00000460289 C18orf32Q8TCD1 76 aa14.25□□□□□ -0.13
PTPN4-208ENST00000460289 PHF5AQ7RTV0 110 aaKnown RBP14.24□□□□□ -0.13
PTPN4-208ENST00000460289 RAB5BP61020 215 aa14.23□□□□□ -0.13
PTPN4-208ENST00000460289 IGLV5-45A0A087WSX0 123 aa14.22□□□□□ -0.13
PTPN4-208ENST00000460289 FAM168BA1KXE4 195 aa14.22□□□□□ -0.13
PTPN4-208ENST00000460289 PDZD11Q5EBL8 140 aa14.22□□□□□ -0.13
PTPN4-208ENST00000460289 F8VRH5 84 aa14.21□□□□□ -0.13
PTPN4-208ENST00000460289 CXCL5P42830 114 aa14.21□□□□□ -0.13
PTPN4-208ENST00000460289 SRSF9Q13242 221 aaKnown RBP eCLIP14.21□□□□□ -0.13
PTPN4-208ENST00000460289 URB1-AS1Q96HZ7 61 aa14.21□□□□□ -0.13
PTPN4-208ENST00000460289 PSORS1C2Q9UIG4 136 aa14.21□□□□□ -0.13
PTPN4-208ENST00000460289 SMIM1B2RUZ4 78 aa14.2□□□□□ -0.14
PTPN4-208ENST00000460289 FAM19A5Q7Z5A7 132 aaPredicted RBP14.2□□□□□ -0.14
PTPN4-208ENST00000460289 HBDP02042 147 aa14.19□□□□□ -0.14
PTPN4-208ENST00000460289 A0A096LNJ9 63 aa14.18□□□□□ -0.14
PTPN4-208ENST00000460289 MT1HL1P0DM35 61 aa14.18□□□□□ -0.14
PTPN4-208ENST00000460289 REG3GQ6UW15 175 aa14.18□□□□□ -0.14
PTPN4-208ENST00000460289 H3BRM9 83 aa14.17□□□□□ -0.14
PTPN4-208ENST00000460289 NDUFA6P56556 154 aa14.17□□□□□ -0.14
PTPN4-208ENST00000460289 C1orf137Q5JT78 98 aa14.17□□□□□ -0.14
PTPN4-208ENST00000460289 C9orf129Q5T035 196 aaKnown RBP14.17□□□□□ -0.14
PTPN4-208ENST00000460289 COX7B2Q8TF08 81 aa14.17□□□□□ -0.14
PTPN4-208ENST00000460289 LINC01600Q96MT4 127 aa14.17□□□□□ -0.14
PTPN4-208ENST00000460289 YPEL4Q96NS1 127 aa14.17□□□□□ -0.14
PTPN4-208ENST00000460289 M0QXV9 152 aa14.14□□□□□ -0.15
PTPN4-208ENST00000460289 ATP5LO75964 103 aa14.14□□□□□ -0.15
PTPN4-208ENST00000460289 SPINK8P0C7L1 97 aa14.14□□□□□ -0.15
PTPN4-208ENST00000460289 IGLC3P0DOY3 106 aa14.14□□□□□ -0.15
PTPN4-208ENST00000460289 PMCHL1Q16048 86 aa14.14□□□□□ -0.15
PTPN4-208ENST00000460289 KRTAP7-1Q8IUC3 87 aa14.14□□□□□ -0.15
PTPN4-208ENST00000460289 UBE2BP63146 152 aa14.11□□□□□ -0.15
PTPN4-208ENST00000460289 CHCHD1Q96BP2 118 aaKnown RBP14.1□□□□□ -0.15
PTPN4-208ENST00000460289 XAGE1AQ9HD64 81 aa14.1□□□□□ -0.15
PTPN4-208ENST00000460289 IGLV7-43P04211 117 aa14.09□□□□□ -0.15
PTPN4-208ENST00000460289 BAGE3Q86Y29 109 aa14.09□□□□□ -0.15
PTPN4-208ENST00000460289 CBLN2Q8IUK8 224 aa14.09□□□□□ -0.15
PTPN4-208ENST00000460289 KRTAP11-1Q8IUC1 163 aa14.08□□□□□ -0.16
PTPN4-208ENST00000460289 ODF1Q14990 250 aa14.07□□□□□ -0.16
PTPN4-208ENST00000460289 IGLV5-39A0A0G2JS06 123 aa14.06□□□□□ -0.16
PTPN4-208ENST00000460289 ZNF22P17026 224 aaPredicted RBP14.06□□□□□ -0.16
PTPN4-208ENST00000460289 LBHQ53QV2 105 aaPredicted RBP14.06□□□□□ -0.16
PTPN4-208ENST00000460289 C22orf24Q9Y442 160 aa14.06□□□□□ -0.16
PTPN4-208ENST00000460289 DIRC1Q969H9 104 aa14.05□□□□□ -0.16
PTPN4-208ENST00000460289 PLA2G2DQ9UNK4 145 aa14.05□□□□□ -0.16
PTPN4-208ENST00000460289 SLC7A5P1Q8MH63 180 aa14.04□□□□□ -0.16
PTPN4-208ENST00000460289 KRTAP10-8P60410 259 aa14.03□□□□□ -0.16
PTPN4-208ENST00000460289 HMCN2Q8NDA2 5059 aa14.03□□□□□ -0.16
PTPN4-208ENST00000460289 TMEM170BQ5T4T1 132 aa14.02□□□□□ -0.17
PTPN4-208ENST00000460289 TP73-AS1Q9UF72 201 aa14.02□□□□□ -0.17
PTPN4-208ENST00000460289 CHTOPQ9Y3Y2 248 aaKnown RBP14.02□□□□□ -0.17
PTPN4-208ENST00000460289 C11orf86A6NJI1 115 aa14.01□□□□□ -0.17
PTPN4-208ENST00000460289 IFI27L1Q96BM0 104 aa14.01□□□□□ -0.17
PTPN4-208ENST00000460289 HSBP1O75506 76 aa14□□□□□ -0.17
PTPN4-208ENST00000460289 TRGC2P03986 189 aa14□□□□□ -0.17
PTPN4-208ENST00000460289 TNXBP22105 4242 aa13.99□□□□□ -0.17
PTPN4-208ENST00000460289 TRAV12-1A0A0B4J245 112 aa13.99□□□□□ -0.17
PTPN4-208ENST00000460289 MRPL55Q7Z7F7 128 aaKnown RBP13.99□□□□□ -0.17
PTPN4-208ENST00000460289 H0Y9J4 135 aa13.98□□□□□ -0.17
PTPN4-208ENST00000460289 NUPR1O60356 82 aa13.98□□□□□ -0.17
PTPN4-208ENST00000460289 SFTA2Q6UW10 78 aa13.98□□□□□ -0.17
PTPN4-208ENST00000460289 PFN2P35080 140 aa13.96□□□□□ -0.17
PTPN4-208ENST00000460289 COX17Q14061 63 aa13.96□□□□□ -0.17
PTPN4-208ENST00000460289 FAM19A2Q8N3H0 131 aa13.95□□□□□ -0.18
PTPN4-208ENST00000460289 ERG28Q9UKR5 140 aa13.94□□□□□ -0.18
PTPN4-208ENST00000460289 LINC00167Q96N53 147 aa13.93□□□□□ -0.18
PTPN4-208ENST00000460289 IGLV5-37A0A075B6J1 123 aa13.92□□□□□ -0.18
PTPN4-208ENST00000460289 NKAPP1Q8N9T2 125 aa13.92□□□□□ -0.18
PTPN4-208ENST00000460289 TMEM223A0PJW6 202 aa13.91□□□□□ -0.18
PTPN4-208ENST00000460289 ZNF861PO60384 105 aa13.91□□□□□ -0.18
PTPN4-208ENST00000460289 ZNF625Q96I27 306 aaPredicted RBP13.91□□□□□ -0.18
PTPN4-208ENST00000460289 COLCA2A8K830 154 aa13.9□□□□□ -0.18
PTPN4-208ENST00000460289 RPL37AP8A6NKH3 93 aa13.89□□□□□ -0.19
PTPN4-208ENST00000460289 SERF1AO75920 110 aa13.89□□□□□ -0.19
PTPN4-208ENST00000460289 LEPROTL1O95214 131 aa13.89□□□□□ -0.19
PTPN4-208ENST00000460289 SND1-IT1Q9HBX3 110 aa13.88□□□□□ -0.19
PTPN4-208ENST00000460289 GAGE10A6NGK3 116 aa13.87□□□□□ -0.19
PTPN4-208ENST00000460289 BCE1O60756 84 aa13.87□□□□□ -0.19
PTPN4-208ENST00000460289 RPL24P83731 157 aaKnown RBP13.86□□□□□ -0.19
PTPN4-208ENST00000460289 PRR26Q8N8Z3 221 aa13.86□□□□□ -0.19
PTPN4-208ENST00000460289 IGLV1-50A0A075B6I6 118 aa13.85□□□□□ -0.19
PTPN4-208ENST00000460289 RPL28P46779 137 aaKnown RBP13.85□□□□□ -0.19
PTPN4-208ENST00000460289 LINC00310P59036 64 aa13.85□□□□□ -0.19
PTPN4-208ENST00000460289 H0Y8G0 127 aa13.84□□□□□ -0.19
PTPN4-208ENST00000460289 LINC00158P58513 81 aa13.84□□□□□ -0.19
PTPN4-208ENST00000460289 HSPB8Q9UJY1 196 aa13.84□□□□□ -0.19
PTPN4-208ENST00000460289 KRTAP1-4P0C5Y4 121 aa13.83□□□□□ -0.2
PTPN4-208ENST00000460289 VPREB1P12018 145 aa13.82□□□□□ -0.2
PTPN4-208ENST00000460289 FABP4P15090 132 aa13.8□□□□□ -0.2
PTPN4-208ENST00000460289 IGKV2-28A0A075B6P5 120 aa13.79□□□□□ -0.2
PTPN4-208ENST00000460289 ATP6V1G1O75348 118 aa13.79□□□□□ -0.2
PTPN4-208ENST00000460289 IGKV2D-28P01615 120 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms