RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 Q8IYB0 196 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 Q8N814 137 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 B9D2Q9BPU9 175 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 A0A1B0GW54 56 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 ERC2-IT1O76042 136 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 MOBPQ13875 183 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 CCL19Q99731 98 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 PRR14LQ5THK1 2151 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 IGKV1-6A0A0C4DH72 117 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 CGB3P0DN86 165 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 CGB7P0DN87 165 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 KRTAP1-1Q07627 177 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 LINC01590Q5TEZ4 76 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 C20orf203Q8NBC4 194 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 MAPK1IP1LQ8NDC0 245 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 GFRA4Q9GZZ7 299 aa3.28□□□□□ -1.88
CCDC88A-209ENST00000456975 IGHV3-72A0A0B4J1Y9 119 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 A0A0J9YY99 117 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 TRBV7-4A0A0J9YYF1 115 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 TMEM14DPA8MWL7 114 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 ARL14EPLP0DKL9 152 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 Q1RN00 199 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 FAM104AQ969W3 186 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 ZANQ9Y493 2812 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 USF3Q68DE3 2245 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 LINC01546A6NGU7 62 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 LY6HO94772 140 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 CHTF8P0CG12 524 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 RPL27AP46776 148 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 LIMD2Q9BT23 127 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 LINC00846Q9NV44 126 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 ABCA1O95477 2261 aa3.27□□□□□ -1.89
CCDC88A-209ENST00000456975 ANK2Q01484 3957 aa3.26□□□□□ -1.89
CCDC88A-209ENST00000456975 C17orf58Q2M2W7 97 aa3.26□□□□□ -1.89
CCDC88A-209ENST00000456975 Q8N7P7 452 aa3.26□□□□□ -1.89
CCDC88A-209ENST00000456975 U3KQK5 164 aa3.26□□□□□ -1.89
CCDC88A-209ENST00000456975 PSCAO43653 123 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 IGHV3-48P01763 117 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 ZNF137PP52743 207 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 ROMO1P60602 79 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 RPL36AP83881 106 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 C1orf134Q5TEV5 83 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 ICOSQ9Y6W8 199 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.25□□□□□ -1.892e-10■■■■□ 23.2
CCDC88A-209ENST00000456975 NACAE9PAV3 2078 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 TRBV6-8A0A0A6YYG3 113 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 C11orf86A6NJI1 115 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 H7C2G1 150 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 DNAL4O96015 105 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 IGLV2-11P01706 119 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 ZFAND2AQ8N6M9 145 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 TMEM254Q8TBM7 123 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 FGF23Q9GZV9 251 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 KIF25-AS1Q9Y6Z4 181 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 CADP27708 2225 aa3.25□□□□□ -1.89
CCDC88A-209ENST00000456975 LRCOL1A6NCL2 159 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 IGHV3-13P01766 116 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 ARMS2P0C7Q2 107 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 RPS27P42677 84 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 CMC4P56277 68 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 C1orf64Q8NEQ6 169 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 CDC42SE2Q9NRR3 84 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 D6R8Y8 96 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 TRGV3P03979 118 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 DEFA4P12838 97 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 MUSTN1Q8IVN3 82 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 ARHGAP5-AS1Q96IT6 56 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 RPP21Q9H633 154 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 S4R3C0 116 aa3.24□□□□□ -1.89
CCDC88A-209ENST00000456975 A0A096LNT2 108 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 TRAV12-1A0A0B4J245 112 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 A6NED7 52 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 F8VRH5 84 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 M0R135 149 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 NDUFA3O95167 84 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 FXYD7P58549 80 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 OCR1Q9BZK8 76 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 XAGE1AQ9HD64 81 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 IGHV4-30-2A0A087WSY4 118 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 LHBP01229 141 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 IGLV3-1P01715 115 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 SPANXN5Q5MJ07 72 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 TMEM167BQ9NRX6 74 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 C22orf24Q9Y442 160 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 TMEM14AQ9Y6G1 99 aa3.23□□□□□ -1.89
CCDC88A-209ENST00000456975 ARFGEF3Q5TH69 2177 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 MALRD1Q5VYJ5 2156 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 IGHV7-81A0A0B4J1V7 117 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 IGHV1-46P01743 117 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 CRPP02741 224 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 EGFEM1PQ0D2K5 195 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 C9orf66Q5T8R8 295 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 DHRS4-AS1Q9P1J3 65 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 MUC4Q99102 2169 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 ROS1P08922 2347 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 TGP01266 2768 aa3.22□□□□□ -1.89
CCDC88A-209ENST00000456975 IGLV4-3A0A075B6K6 122 aa3.21□□□□□ -1.89
CCDC88A-209ENST00000456975 A0A1B0GUT8 65 aa3.21□□□□□ -1.89
CCDC88A-209ENST00000456975 LOC101927531A0A1B0GV80 90 aa3.21□□□□□ -1.89
CCDC88A-209ENST00000456975 I3L3M4 83 aa3.21□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms