RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 Q8IZM0 81 aa10.88□□□□□ -0.67
USP39-208ENST00000455732 PDZD11Q5EBL8 140 aa10.87□□□□□ -0.67
USP39-208ENST00000455732 LINC00469Q8N7U9 141 aa10.87□□□□□ -0.67
USP39-208ENST00000455732 PACRGQ96M98 296 aaPredicted RBP10.87□□□□□ -0.67
USP39-208ENST00000455732 PRSS2P07478 247 aa10.86□□□□□ -0.67
USP39-208ENST00000455732 C2orf82Q6UX34 121 aa10.86□□□□□ -0.67
USP39-208ENST00000455732 SMIM1B2RUZ4 78 aa10.85□□□□□ -0.67
USP39-208ENST00000455732 PMCHL1Q16048 86 aa10.85□□□□□ -0.67
USP39-208ENST00000455732 CHCHD1Q96BP2 118 aaKnown RBP10.85□□□□□ -0.67
USP39-208ENST00000455732 A0A1W2PNN7 141 aa10.84□□□□□ -0.67
USP39-208ENST00000455732 ATP5LO75964 103 aa10.84□□□□□ -0.67
USP39-208ENST00000455732 OXTP01178 125 aa10.84□□□□□ -0.67
USP39-208ENST00000455732 Q6ZRP5 223 aa10.84□□□□□ -0.67
USP39-208ENST00000455732 TOMM7Q9P0U1 55 aa10.84□□□□□ -0.67
USP39-208ENST00000455732 IGLC3P0DOY3 106 aa10.83□□□□□ -0.68
USP39-208ENST00000455732 CXCL5P42830 114 aa10.83□□□□□ -0.68
USP39-208ENST00000455732 CKS1BP61024 79 aa10.83□□□□□ -0.68
USP39-208ENST00000455732 C9orf116Q5BN46 136 aaPredicted RBP10.83□□□□□ -0.68
USP39-208ENST00000455732 C6orf226Q5I0X4 101 aa10.83□□□□□ -0.68
USP39-208ENST00000455732 NDUFC2-KCTD14E9PQ53 114 aa10.82□□□□□ -0.68
USP39-208ENST00000455732 TRGC2P03986 189 aa10.81□□□□□ -0.68
USP39-208ENST00000455732 PRR3P79522 188 aaKnown RBP10.81□□□□□ -0.68
USP39-208ENST00000455732 F8VRH5 84 aa10.8□□□□□ -0.68
USP39-208ENST00000455732 H3BRM9 83 aa10.8□□□□□ -0.68
USP39-208ENST00000455732 COLCA2A8K830 154 aa10.79□□□□□ -0.68
USP39-208ENST00000455732 NDUFA6P56556 154 aa10.79□□□□□ -0.68
USP39-208ENST00000455732 SPINK8P0C7L1 97 aa10.78□□□□□ -0.68
USP39-208ENST00000455732 GAGE2EQ4V326 116 aa10.78□□□□□ -0.68
USP39-208ENST00000455732 COX7B2Q8TF08 81 aa10.78□□□□□ -0.68
USP39-208ENST00000455732 GAGE2DQ9UEU5 116 aa10.78□□□□□ -0.68
USP39-208ENST00000455732 ZNF22P17026 224 aaPredicted RBP10.77□□□□□ -0.69
USP39-208ENST00000455732 SERTAD4-AS1Q5TG53 156 aa10.77□□□□□ -0.69
USP39-208ENST00000455732 BAGE3Q86Y29 109 aa10.77□□□□□ -0.69
USP39-208ENST00000455732 IGLV5-39A0A0G2JS06 123 aa10.76□□□□□ -0.69
USP39-208ENST00000455732 HSBP1O75506 76 aa10.76□□□□□ -0.69
USP39-208ENST00000455732 TRAV12-1A0A0B4J245 112 aa10.75□□□□□ -0.69
USP39-208ENST00000455732 FAM168BA1KXE4 195 aa10.75□□□□□ -0.69
USP39-208ENST00000455732 C9orf129Q5T035 196 aaKnown RBP10.75□□□□□ -0.69
USP39-208ENST00000455732 IFI27L1Q96BM0 104 aa10.75□□□□□ -0.69
USP39-208ENST00000455732 HMCN2Q8NDA2 5059 aa10.75□□□□□ -0.69
USP39-208ENST00000455732 PHF5AQ7RTV0 110 aaKnown RBP10.74□□□□□ -0.69
USP39-208ENST00000455732 C11orf86A6NJI1 115 aa10.73□□□□□ -0.69
USP39-208ENST00000455732 LINC00310P59036 64 aa10.73□□□□□ -0.69
USP39-208ENST00000455732 KRTAP7-1Q8IUC3 87 aa10.73□□□□□ -0.69
USP39-208ENST00000455732 SERF1AO75920 110 aa10.72□□□□□ -0.69
USP39-208ENST00000455732 ODF1Q14990 250 aa10.72□□□□□ -0.69
USP39-208ENST00000455732 FAM19A5Q7Z5A7 132 aaPredicted RBP10.72□□□□□ -0.69
USP39-208ENST00000455732 FAM19A2Q8N3H0 131 aa10.72□□□□□ -0.69
USP39-208ENST00000455732 CHTOPQ9Y3Y2 248 aaKnown RBP10.72□□□□□ -0.69
USP39-208ENST00000455732 MT1HL1P0DM35 61 aa10.71□□□□□ -0.69
USP39-208ENST00000455732 M0QXV9 152 aa10.7□□□□□ -0.7
USP39-208ENST00000455732 PSORS1C2Q9UIG4 136 aa10.7□□□□□ -0.7
USP39-208ENST00000455732 TMEM170BQ5T4T1 132 aa10.69□□□□□ -0.7
USP39-208ENST00000455732 SPINK6Q6UWN8 80 aa10.69□□□□□ -0.7
USP39-208ENST00000455732 PLA2G2DQ9UNK4 145 aa10.69□□□□□ -0.7
USP39-208ENST00000455732 SCO1O75880 301 aa10.68□□□□□ -0.7
USP39-208ENST00000455732 SRSF9Q13242 221 aaKnown RBP eCLIP10.68□□□□□ -0.7
USP39-208ENST00000455732 XAGE1AQ9HD64 81 aa10.68□□□□□ -0.7
USP39-208ENST00000455732 LEPROTL1O95214 131 aa10.67□□□□□ -0.7
USP39-208ENST00000455732 SFTA2Q6UW10 78 aa10.67□□□□□ -0.7
USP39-208ENST00000455732 TMEM223A0PJW6 202 aa10.66□□□□□ -0.7
USP39-208ENST00000455732 NUPR1O60356 82 aa10.65□□□□□ -0.7
USP39-208ENST00000455732 C1orf137Q5JT78 98 aa10.65□□□□□ -0.7
USP39-208ENST00000455732 KRTAP11-1Q8IUC1 163 aa10.65□□□□□ -0.7
USP39-208ENST00000455732 TP73-AS1Q9UF72 201 aa10.65□□□□□ -0.7
USP39-208ENST00000455732 HSPB8Q9UJY1 196 aa10.65□□□□□ -0.7
USP39-208ENST00000455732 ZNF625Q96I27 306 aaPredicted RBP10.64□□□□□ -0.71
USP39-208ENST00000455732 TNXBP22105 4242 aa10.64□□□□□ -0.71
USP39-208ENST00000455732 COX17Q14061 63 aa10.63□□□□□ -0.71
USP39-208ENST00000455732 C22orf24Q9Y442 160 aa10.63□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BKO60814 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BJP06899 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BOP23527 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BBP33778 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BDP58876 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BCP62807 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 UBE2BP63146 152 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST2H2BEQ16778 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BHQ93079 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BNQ99877 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 HIST1H2BMQ99879 126 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 ERG28Q9UKR5 140 aa10.62□□□□□ -0.71
USP39-208ENST00000455732 LBHQ53QV2 105 aaPredicted RBP10.61□□□□□ -0.71
USP39-208ENST00000455732 REG3GQ6UW15 175 aa10.61□□□□□ -0.71
USP39-208ENST00000455732 LINC01600Q96MT4 127 aa10.61□□□□□ -0.71
USP39-208ENST00000455732 IGLV5-37A0A075B6J1 123 aa10.6□□□□□ -0.71
USP39-208ENST00000455732 IGLV7-43P04211 117 aa10.6□□□□□ -0.71
USP39-208ENST00000455732 MRPL55Q7Z7F7 128 aaKnown RBP10.6□□□□□ -0.71
USP39-208ENST00000455732 H0Y8G0 127 aa10.59□□□□□ -0.71
USP39-208ENST00000455732 FABP4P15090 132 aa10.59□□□□□ -0.71
USP39-208ENST00000455732 PLNP26678 52 aa10.59□□□□□ -0.71
USP39-208ENST00000455732 PFN2P35080 140 aa10.59□□□□□ -0.71
USP39-208ENST00000455732 UBR4Q5T4S7 5183 aa10.59□□□□□ -0.71
USP39-208ENST00000455732 SND1-IT1Q9HBX3 110 aa10.57□□□□□ -0.72
USP39-208ENST00000455732 DPM2O94777 84 aa10.56□□□□□ -0.72
USP39-208ENST00000455732 DIRC1Q969H9 104 aa10.55□□□□□ -0.72
USP39-208ENST00000455732 MAP1LC3CQ9BXW4 147 aa10.55□□□□□ -0.72
USP39-208ENST00000455732 HERV-K104P63124 156 aa10.54□□□□□ -0.72
USP39-208ENST00000455732 NKAPP1Q8N9T2 125 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms