RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 TM2D2Q9BX73 214 aa11.29□□□□□ -0.6
PRPF40A-204ENST00000450303 ENHOQ6UWT2 76 aa11.28□□□□□ -0.6
PRPF40A-204ENST00000450303 TRAV13-1A0A0B4J241 112 aa11.27□□□□□ -0.61
PRPF40A-204ENST00000450303 LINC00959A0A1B0GUT2 108 aa11.27□□□□□ -0.61
PRPF40A-204ENST00000450303 H3BRM9 83 aa11.27□□□□□ -0.61
PRPF40A-204ENST00000450303 LECT2O14960 151 aa11.27□□□□□ -0.61
PRPF40A-204ENST00000450303 PTTG1IPP53801 180 aa11.27□□□□□ -0.61
PRPF40A-204ENST00000450303 HAMPP81172 84 aa11.27□□□□□ -0.61
PRPF40A-204ENST00000450303 FAM104AQ969W3 186 aa11.27□□□□□ -0.61
PRPF40A-204ENST00000450303 ZNF815PA8K554 130 aa11.26□□□□□ -0.61
PRPF40A-204ENST00000450303 TAX1BP3O14907 124 aa11.26□□□□□ -0.61
PRPF40A-204ENST00000450303 C1orf43Q9BWL3 253 aa11.26□□□□□ -0.61
PRPF40A-204ENST00000450303 LGALS3P17931 250 aaKnown RBP11.25□□□□□ -0.61
PRPF40A-204ENST00000450303 VAMP3Q15836 100 aa11.25□□□□□ -0.61
PRPF40A-204ENST00000450303 SCGB1D4Q6XE38 83 aa11.25□□□□□ -0.61
PRPF40A-204ENST00000450303 PLEKHB2Q96CS7 222 aa11.25□□□□□ -0.61
PRPF40A-204ENST00000450303 HIST1H4GQ99525 98 aa11.25□□□□□ -0.61
PRPF40A-204ENST00000450303 IGKV2D-24A0A075B6R9 120 aa11.24□□□□□ -0.61
PRPF40A-204ENST00000450303 SMIM13P0DJ93 91 aa11.24□□□□□ -0.61
PRPF40A-204ENST00000450303 CEND1Q8N111 149 aa11.24□□□□□ -0.61
PRPF40A-204ENST00000450303 NTN5Q8WTR8 489 aaPredicted RBP11.24□□□□□ -0.61
PRPF40A-204ENST00000450303 TTTY13Q9BZ97 58 aa11.24□□□□□ -0.61
PRPF40A-204ENST00000450303 EPM2AB3EWF7 344 aa11.23□□□□□ -0.61
PRPF40A-204ENST00000450303 LEPROTO15243 131 aa11.23□□□□□ -0.61
PRPF40A-204ENST00000450303 SMR3BP02814 79 aaPredicted RBP11.23□□□□□ -0.61
PRPF40A-204ENST00000450303 UBE2D1P51668 147 aa11.23□□□□□ -0.61
PRPF40A-204ENST00000450303 IGLV10-54A0A075B6I4 117 aa11.22□□□□□ -0.61
PRPF40A-204ENST00000450303 TMEM238LA0A1B0GVL6 79 aa11.22□□□□□ -0.61
PRPF40A-204ENST00000450303 A6NJY4 79 aa11.22□□□□□ -0.61
PRPF40A-204ENST00000450303 CHCHD10Q8WYQ3 142 aaPredicted RBP11.22□□□□□ -0.61
PRPF40A-204ENST00000450303 GEMIN7Q9H840 131 aaKnown RBP11.22□□□□□ -0.61
PRPF40A-204ENST00000450303 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.21□□□□□ -0.61
PRPF40A-204ENST00000450303 TMEM223A0PJW6 202 aa11.21□□□□□ -0.61
PRPF40A-204ENST00000450303 HERVK_113P63121 156 aa11.21□□□□□ -0.61
PRPF40A-204ENST00000450303 UBE2V1Q13404 147 aa11.21□□□□□ -0.61
PRPF40A-204ENST00000450303 FAM19A3Q7Z5A8 133 aa11.21□□□□□ -0.61
PRPF40A-204ENST00000450303 A0A0J9YXV3 536 aa11.2□□□□□ -0.62
PRPF40A-204ENST00000450303 TINCRA0A1B0GVN0 87 aa11.2□□□□□ -0.62
PRPF40A-204ENST00000450303 C9orf118A6NHY6 69 aa11.2□□□□□ -0.62
PRPF40A-204ENST00000450303 J3QQQ9 107 aa11.2□□□□□ -0.62
PRPF40A-204ENST00000450303 ZNF22P17026 224 aaPredicted RBP11.2□□□□□ -0.62
PRPF40A-204ENST00000450303 XCL1P47992 114 aa11.2□□□□□ -0.62
PRPF40A-204ENST00000450303 CD164L2Q6UWJ8 174 aa11.2□□□□□ -0.62
PRPF40A-204ENST00000450303 FAM30AQ9NZY2 134 aa11.2□□□□□ -0.62
PRPF40A-204ENST00000450303 GAGE12HA6NDE8 117 aa11.19□□□□□ -0.62
PRPF40A-204ENST00000450303 LINC00242Q5T6M2 205 aa11.19□□□□□ -0.62
PRPF40A-204ENST00000450303 SRSF9Q13242 221 aaKnown RBP eCLIP11.18□□□□□ -0.62
PRPF40A-204ENST00000450303 Q5VSD8 79 aa11.18□□□□□ -0.62
PRPF40A-204ENST00000450303 GTF2H5Q6ZYL4 71 aa11.18□□□□□ -0.62
PRPF40A-204ENST00000450303 FXYD2P54710 66 aa11.17□□□□□ -0.62
PRPF40A-204ENST00000450303 LINC01620Q4KN68 170 aa11.17□□□□□ -0.62
PRPF40A-204ENST00000450303 FAT1Q14517 4588 aa11.17□□□□□ -0.62
PRPF40A-204ENST00000450303 COX7A2LO14548 114 aa11.16□□□□□ -0.62
PRPF40A-204ENST00000450303 Q6ZVH6 145 aa11.16□□□□□ -0.62
PRPF40A-204ENST00000450303 SPANXB1Q9NS25 103 aaPredicted RBP11.16□□□□□ -0.62
PRPF40A-204ENST00000450303 NHP2Q9NX24 153 aaKnown RBP11.16□□□□□ -0.62
PRPF40A-204ENST00000450303 APOMO95445 188 aa11.15□□□□□ -0.62
PRPF40A-204ENST00000450303 MALP21145 153 aa11.15□□□□□ -0.62
PRPF40A-204ENST00000450303 COX6A2Q02221 97 aa11.15□□□□□ -0.62
PRPF40A-204ENST00000450303 FOXI1Q12951 378 aa11.15□□□□□ -0.62
PRPF40A-204ENST00000450303 RAB37Q96AX2 223 aa11.15□□□□□ -0.62
PRPF40A-204ENST00000450303 DNAH8Q96JB1 4490 aa11.15□□□□□ -0.63
PRPF40A-204ENST00000450303 IGHV3OR16-9A0A0B4J2B5 98 aa11.14□□□□□ -0.63
PRPF40A-204ENST00000450303 INAFM2P0DMQ5 153 aa11.14□□□□□ -0.63
PRPF40A-204ENST00000450303 CFAP161Q6P656 301 aa11.14□□□□□ -0.63
PRPF40A-204ENST00000450303 KRTAP26-1Q6PEX3 210 aa11.14□□□□□ -0.63
PRPF40A-204ENST00000450303 LINC01561Q8N1V8 128 aa11.14□□□□□ -0.63
PRPF40A-204ENST00000450303 H3BUT2 72 aa11.13□□□□□ -0.63
PRPF40A-204ENST00000450303 FABP2P12104 132 aa11.13□□□□□ -0.63
PRPF40A-204ENST00000450303 C5orf38Q86SI9 138 aa11.13□□□□□ -0.63
PRPF40A-204ENST00000450303 IGLV5-45A0A087WSX0 123 aa11.12□□□□□ -0.63
PRPF40A-204ENST00000450303 A0A087WZ39 114 aa11.12□□□□□ -0.63
PRPF40A-204ENST00000450303 IGHV1-58A0A0C4DH39 117 aa11.12□□□□□ -0.63
PRPF40A-204ENST00000450303 GAGE10A6NGK3 116 aa11.12□□□□□ -0.63
PRPF40A-204ENST00000450303 TMEM238C9JI98 176 aa11.12□□□□□ -0.63
PRPF40A-204ENST00000450303 FAM229AH3BQW9 127 aa11.11□□□□□ -0.63
PRPF40A-204ENST00000450303 TSPEAR-AS2P59090 65 aa11.11□□□□□ -0.63
PRPF40A-204ENST00000450303 CDKN2A-AS1Q9UH64 79 aa11.11□□□□□ -0.63
PRPF40A-204ENST00000450303 A0A1W2PPM0 123 aa11.1□□□□□ -0.63
PRPF40A-204ENST00000450303 C14orf177Q52M58 125 aa11.1□□□□□ -0.63
PRPF40A-204ENST00000450303 IGHV3-64A0A075B6Q5 118 aa11.09□□□□□ -0.63
PRPF40A-204ENST00000450303 A0A1B0GWB2 263 aa11.09□□□□□ -0.63
PRPF40A-204ENST00000450303 VPS13BQ7Z7G8 4022 aa11.08□□□□□ -0.64
PRPF40A-204ENST00000450303 K7EP34 96 aa11.08□□□□□ -0.64
PRPF40A-204ENST00000450303 Q6ZSA8 131 aa11.08□□□□□ -0.64
PRPF40A-204ENST00000450303 USP17L23D6RBM5 183 aa11.07□□□□□ -0.64
PRPF40A-204ENST00000450303 RPL24P83731 157 aaKnown RBP11.07□□□□□ -0.64
PRPF40A-204ENST00000450303 LYRM7Q5U5X0 104 aa11.07□□□□□ -0.64
PRPF40A-204ENST00000450303 NDUFA12Q9UI09 145 aa11.07□□□□□ -0.64
PRPF40A-204ENST00000450303 SPCS1Q9Y6A9 102 aa11.07□□□□□ -0.64
PRPF40A-204ENST00000450303 K7ERJ3 54 aa11.06□□□□□ -0.64
PRPF40A-204ENST00000450303 SPINK8P0C7L1 97 aa11.06□□□□□ -0.64
PRPF40A-204ENST00000450303 ZNF561-AS1K7EIQ3 104 aa11.05□□□□□ -0.64
PRPF40A-204ENST00000450303 PRSS2P07478 247 aa11.05□□□□□ -0.64
PRPF40A-204ENST00000450303 SRRM2Q9UQ35 2752 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-204ENST00000450303 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.04□□□□□ -0.64
PRPF40A-204ENST00000450303 A0A0J9YXY3 114 aa11.04□□□□□ -0.64
PRPF40A-204ENST00000450303 SMIM1B2RUZ4 78 aa11.04□□□□□ -0.64
PRPF40A-204ENST00000450303 CIRBPQ14011 172 aaKnown RBP11.04□□□□□ -0.64
PRPF40A-204ENST00000450303 SCXQ7RTU7 201 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms