RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF702PQ9H963 129 aa5.25□□□□□ -1.57
VPS53-204ENST00000437048 LINC00242Q5T6M2 205 aa5.25□□□□□ -1.57
VPS53-204ENST00000437048 SPAG11AQ6PDA7 123 aa5.25□□□□□ -1.57
VPS53-204ENST00000437048 F8W735 103 aaPredicted RBP5.25□□□□□ -1.57
VPS53-204ENST00000437048 TRAV10A0A0B4J240 114 aa5.24□□□□□ -1.57
VPS53-204ENST00000437048 LINC00575Q6W349 94 aa5.24□□□□□ -1.57
VPS53-204ENST00000437048 H0Y9P7 68 aa5.24□□□□□ -1.57
VPS53-204ENST00000437048 UNQ9165/PRO28630Q6UXU0 137 aa5.24□□□□□ -1.57
VPS53-204ENST00000437048 SHISA2Q6UWI4 295 aa5.24□□□□□ -1.57
VPS53-204ENST00000437048 Q6ZTI0 123 aa5.24□□□□□ -1.57
VPS53-204ENST00000437048 Q6ZVQ6 151 aa5.24□□□□□ -1.57
VPS53-204ENST00000437048 IGLV1-40P01703 118 aa5.23□□□□□ -1.57
VPS53-204ENST00000437048 C11orf72Q8NBR9 251 aa5.23□□□□□ -1.57
VPS53-204ENST00000437048 MOBPQ13875 183 aa5.23□□□□□ -1.57
VPS53-204ENST00000437048 DCANP1Q8TF63 244 aa5.23□□□□□ -1.57
VPS53-204ENST00000437048 POM121L12Q8N7R1 296 aa5.23□□□□□ -1.57
VPS53-204ENST00000437048 IGHV4-61A0A0C4DH41 118 aa5.23□□□□□ -1.57
VPS53-204ENST00000437048 COL4A3Q01955 1670 aa5.23□□□□□ -1.57
VPS53-204ENST00000437048 IGLV2-18A0A075B6J9 118 aa5.23□□□□□ -1.57
VPS53-204ENST00000437048 REG3GQ6UW15 175 aa5.22□□□□□ -1.57
VPS53-204ENST00000437048 Q6YL49 198 aa5.22□□□□□ -1.57
VPS53-204ENST00000437048 LOC101927531A0A1B0GV80 90 aa5.22□□□□□ -1.57
VPS53-204ENST00000437048 ADORA2A-AS1P86434 159 aa5.22□□□□□ -1.57
VPS53-204ENST00000437048 Q6ZTC4 211 aa5.22□□□□□ -1.57
VPS53-204ENST00000437048 A0A096LPF7 62 aa5.21□□□□□ -1.57
VPS53-204ENST00000437048 PCSK5Q92824 1860 aa5.21□□□□□ -1.57
VPS53-204ENST00000437048 SCXQ7RTU7 201 aa5.21□□□□□ -1.58
VPS53-204ENST00000437048 DEFB135Q30KP9 77 aa5.21□□□□□ -1.58
VPS53-204ENST00000437048 Q6ZS46 218 aa5.21□□□□□ -1.58
VPS53-204ENST00000437048 RITA1Q96K30 269 aa5.21□□□□□ -1.58
VPS53-204ENST00000437048 PRO0461Q9UI25 63 aa5.21□□□□□ -1.58
VPS53-204ENST00000437048 KPRPQ5T749 579 aaPredicted RBP5.21□□□□□ -1.58
VPS53-204ENST00000437048 LMO4P61968 165 aa5.2□□□□□ -1.58
VPS53-204ENST00000437048 TRAV22A0A0B4J277 110 aa5.2□□□□□ -1.58
VPS53-204ENST00000437048 CENPEQ02224 2701 aa5.2□□□□□ -1.58
VPS53-204ENST00000437048 WFDC13Q8IUB5 93 aa5.2□□□□□ -1.58
VPS53-204ENST00000437048 CRIP3Q6Q6R5 217 aa5.2□□□□□ -1.58
VPS53-204ENST00000437048 A0A1B0GU69 56 aa5.19□□□□□ -1.58
VPS53-204ENST00000437048 RPL37AP61513 92 aaKnown RBP5.19□□□□□ -1.58
VPS53-204ENST00000437048 IGHV4-38-2P0DP08 117 aa5.19□□□□□ -1.58
VPS53-204ENST00000437048 LINC00846Q9NV44 126 aa5.19□□□□□ -1.58
VPS53-204ENST00000437048 C1orf64Q8NEQ6 169 aa5.19□□□□□ -1.58
VPS53-204ENST00000437048 URB1-AS1Q96HZ7 61 aa5.19□□□□□ -1.58
VPS53-204ENST00000437048 Q6ZSV7 163 aa5.19□□□□□ -1.58
VPS53-204ENST00000437048 H3BNG1 76 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 SLPIP03973 132 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.18□□□□□ -1.58
VPS53-204ENST00000437048 CEMP1Q6PRD7 247 aaPredicted RBP5.18□□□□□ -1.58
VPS53-204ENST00000437048 DEFB131BA0A096LNP1 70 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 CYSRT1A8MQ03 144 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 J3QKU1 62 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 PSPHP1O15172 72 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 DEFB136Q30KP8 78 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 Q6ZPA2 131 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 SPANXA2-OT1Q8N9U9 137 aa5.18□□□□□ -1.58
VPS53-204ENST00000437048 NANOS2P60321 138 aaKnown RBP5.17□□□□□ -1.58
VPS53-204ENST00000437048 A0A096LNJ9 63 aa5.17□□□□□ -1.58
VPS53-204ENST00000437048 KTN1-AS1Q86SY8 53 aa5.17□□□□□ -1.58
VPS53-204ENST00000437048 TRBV7-4A0A0J9YYF1 115 aa5.17□□□□□ -1.58
VPS53-204ENST00000437048 C7orf65Q6ZTY9 151 aa5.17□□□□□ -1.58
VPS53-204ENST00000437048 LINC00482Q8N8I6 264 aa5.16□□□□□ -1.58
VPS53-204ENST00000437048 SPATA3Q8NHX4 192 aa5.16□□□□□ -1.58
VPS53-204ENST00000437048 C22orf34Q6ZV56 151 aa5.16□□□□□ -1.58
VPS53-204ENST00000437048 Q8NBF4 154 aa5.16□□□□□ -1.58
VPS53-204ENST00000437048 UQCR11O14957 56 aa5.15□□□□□ -1.58
VPS53-204ENST00000437048 LINC01600Q96MT4 127 aa5.15□□□□□ -1.58
VPS53-204ENST00000437048 IGHV4-30-2A0A087WSY4 118 aa5.15□□□□□ -1.58
VPS53-204ENST00000437048 C6orf223Q8N319 242 aa5.15□□□□□ -1.59
VPS53-204ENST00000437048 GVQW2A0A096LPI5 108 aaPredicted RBP5.15□□□□□ -1.59
VPS53-204ENST00000437048 PRR15Q8IV56 129 aa5.15□□□□□ -1.59
VPS53-204ENST00000437048 SOSTDC1Q6X4U4 206 aa5.15□□□□□ -1.59
VPS53-204ENST00000437048 A0A087WYN8 130 aa5.15□□□□□ -1.59
VPS53-204ENST00000437048 FAM229AH3BQW9 127 aa5.14□□□□□ -1.59
VPS53-204ENST00000437048 LCA10Q71F78 164 aa5.14□□□□□ -1.59
VPS53-204ENST00000437048 IGKV2-24A0A0C4DH68 120 aa5.14□□□□□ -1.59
VPS53-204ENST00000437048 LINC00337Q8N6G1 96 aa5.13□□□□□ -1.59
VPS53-204ENST00000437048 IGKV2-28A0A075B6P5 120 aa5.13□□□□□ -1.59
VPS53-204ENST00000437048 NUPR2A6NF83 97 aa5.13□□□□□ -1.59
VPS53-204ENST00000437048 IGKV2D-28P01615 120 aa5.13□□□□□ -1.59
VPS53-204ENST00000437048 C11orf71Q6IPW1 123 aa5.13□□□□□ -1.59
VPS53-204ENST00000437048 ADAMTSL4-AS1Q5T5F5 129 aa5.13□□□□□ -1.59
VPS53-204ENST00000437048 C6orf48Q9UBA6 75 aa5.13□□□□□ -1.59
VPS53-204ENST00000437048 A0A087WVE0 104 aa5.13□□□□□ -1.59
VPS53-204ENST00000437048 C11orf21Q9P2W6 132 aa5.12□□□□□ -1.59
VPS53-204ENST00000437048 IGHV3OR16-9A0A0B4J2B5 98 aa5.12□□□□□ -1.59
VPS53-204ENST00000437048 Q6ZQT0 140 aa5.12□□□□□ -1.59
VPS53-204ENST00000437048 Q9BRP9 147 aa5.12□□□□□ -1.59
VPS53-204ENST00000437048 FSHBP01225 129 aa5.11□□□□□ -1.59
VPS53-204ENST00000437048 ZNF843Q8N446 348 aa5.11□□□□□ -1.59
VPS53-204ENST00000437048 KLK9Q2XQG4 91 aa5.11□□□□□ -1.59
VPS53-204ENST00000437048 TSPEAR-AS2P59090 65 aa5.11□□□□□ -1.59
VPS53-204ENST00000437048 A0A0J9YWU9 116 aa5.1□□□□□ -1.59
VPS53-204ENST00000437048 IGHV4-30-4P0DP06 118 aa5.1□□□□□ -1.59
VPS53-204ENST00000437048 MGAM2Q2M2H8 2515 aa5.1□□□□□ -1.59
VPS53-204ENST00000437048 IGLV1-51P01701 117 aa5.1□□□□□ -1.59
VPS53-204ENST00000437048 LOC100131303A0A0U1RQF7 123 aa5.1□□□□□ -1.59
VPS53-204ENST00000437048 KIF25-AS1Q9Y6Z4 181 aa5.1□□□□□ -1.59
VPS53-204ENST00000437048 LY6G6DO95868 133 aa5.1□□□□□ -1.59
VPS53-204ENST00000437048 COL27A1Q8IZC6 1860 aaPredicted RBP5.1□□□□□ -1.59
VPS53-204ENST00000437048 A0A087WSZ3 146 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms