RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ANGP03950 147 aaKnown RBP5.85□□□□□ -1.47
CD44-208ENST00000428726 UBE2WQ96B02 151 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 X6R8D5 127 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 FAM19A3Q7Z5A8 133 aa5.84□□□□□ -1.47
CD44-208ENST00000428726 SBSPONQ8IVN8 264 aa5.84□□□□□ -1.47
CD44-208ENST00000428726 OR13C6PQ8NH95 151 aa5.84□□□□□ -1.47
CD44-208ENST00000428726 TRBV6-4A0A1B0GX49 114 aa5.84□□□□□ -1.47
CD44-208ENST00000428726 TIMM17BO60830 172 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 IGHV4-30-4P0DP06 118 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 SCGB1A1P11684 91 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 MIAQ16674 131 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 MIR7-3HGQ8N6C7 128 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 ATP6V0E2Q8NHE4 81 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 TRBV6-8A0A0A6YYG3 113 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 NDUFA1O15239 70 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 ATP5G1P05496 136 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 DAD1P61803 113 aa5.83□□□□□ -1.48
CD44-208ENST00000428726 COX6CP09669 75 aa5.82□□□□□ -1.48
CD44-208ENST00000428726 NHLRC4P0CG21 123 aaPredicted RBP5.82□□□□□ -1.48
CD44-208ENST00000428726 C6orf223Q8N319 242 aa5.82□□□□□ -1.48
CD44-208ENST00000428726 IGLV5-39A0A0G2JS06 123 aa5.82□□□□□ -1.48
CD44-208ENST00000428726 IFITM1P13164 125 aa5.82□□□□□ -1.48
CD44-208ENST00000428726 CIRBPQ14011 172 aaKnown RBP5.82□□□□□ -1.48
CD44-208ENST00000428726 C6orf226Q5I0X4 101 aa5.82□□□□□ -1.48
CD44-208ENST00000428726 COL7A1Q02388 2944 aa5.81□□□□□ -1.48
CD44-208ENST00000428726 TRBV10-2A0A0K0K1G8 114 aa5.81□□□□□ -1.48
CD44-208ENST00000428726 SLPIP03973 132 aa5.81□□□□□ -1.48
CD44-208ENST00000428726 NDUFV3P56181 108 aaKnown RBP5.81□□□□□ -1.48
CD44-208ENST00000428726 KLK12Q9UKR0 248 aa5.81□□□□□ -1.48
CD44-208ENST00000428726 DEFB121Q5J5C9 76 aa5.81□□□□□ -1.48
CD44-208ENST00000428726 LINC00308Q8TCZ7 52 aa5.8□□□□□ -1.48
CD44-208ENST00000428726 TRBV30A0A0K0K1B3 111 aa5.8□□□□□ -1.48
CD44-208ENST00000428726 KRTAP10-11P60412 298 aa5.8□□□□□ -1.48
CD44-208ENST00000428726 KRTAP24-1Q3LI83 254 aa5.8□□□□□ -1.48
CD44-208ENST00000428726 FAM218AQ96MZ4 157 aa5.8□□□□□ -1.48
CD44-208ENST00000428726 SMIM20Q8N5G0 67 aa5.79□□□□□ -1.48
CD44-208ENST00000428726 KIR2DL5BQ8NHK3 375 aa5.79□□□□□ -1.48
CD44-208ENST00000428726 COPS9Q8WXC6 57 aa5.79□□□□□ -1.48
CD44-208ENST00000428726 C9orf129Q5T035 196 aaKnown RBP5.78□□□□□ -1.48
CD44-208ENST00000428726 GAGE2AQ6NT46 116 aa5.78□□□□□ -1.48
CD44-208ENST00000428726 CITED1Q99966 193 aa5.78□□□□□ -1.48
CD44-208ENST00000428726 LINC00959A0A1B0GUT2 108 aa5.78□□□□□ -1.48
CD44-208ENST00000428726 M0QXV9 152 aa5.78□□□□□ -1.48
CD44-208ENST00000428726 HERV-K104P63124 156 aa5.78□□□□□ -1.48
CD44-208ENST00000428726 HIGD2BQ4VC39 106 aa5.78□□□□□ -1.48
CD44-208ENST00000428726 C9orf66Q5T8R8 295 aa5.78□□□□□ -1.48
CD44-208ENST00000428726 COX7B2Q8TF08 81 aa5.78□□□□□ -1.48
CD44-208ENST00000428726 SMIM9A6NGZ8 99 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 NANOS2P60321 138 aaKnown RBP5.77□□□□□ -1.49
CD44-208ENST00000428726 Q6ZTC4 211 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 LINC00612Q8N6U2 182 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 PRO0255Q9UI72 69 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 SRRM2Q9UQ35 2752 aaKnown RBP5.77□□□□□ -1.49
CD44-208ENST00000428726 FAM236AA0A1B0GUQ0 79 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 FAM236BA0A1B0GV22 79 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 LST1O00453 97 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 TGP01266 2768 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 MALP21145 153 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 C10orf25Q5T742 122 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 XAGE1AQ9HD64 81 aa5.77□□□□□ -1.49
CD44-208ENST00000428726 LECT2O14960 151 aa5.76□□□□□ -1.49
CD44-208ENST00000428726 BAALC-AS2P0C853 105 aa5.76□□□□□ -1.49
CD44-208ENST00000428726 SMCR5Q8TEV8 140 aa5.76□□□□□ -1.49
CD44-208ENST00000428726 SND1-IT1Q9HBX3 110 aa5.76□□□□□ -1.49
CD44-208ENST00000428726 J3QL48 77 aa5.76□□□□□ -1.49
CD44-208ENST00000428726 CFAP161Q6P656 301 aa5.76□□□□□ -1.49
CD44-208ENST00000428726 WFDC10BQ8IUB3 73 aa5.76□□□□□ -1.49
CD44-208ENST00000428726 LINC00337Q8N6G1 96 aa5.76□□□□□ -1.49
CD44-208ENST00000428726 IGHV3OR16-9A0A0B4J2B5 98 aa5.75□□□□□ -1.49
CD44-208ENST00000428726 NCR3O14931 201 aa5.75□□□□□ -1.49
CD44-208ENST00000428726 KLK5Q9Y337 293 aaPredicted RBP5.75□□□□□ -1.49
CD44-208ENST00000428726 IGKV3D-7A0A0C4DH55 119 aa5.75□□□□□ -1.49
CD44-208ENST00000428726 CHCHD10Q8WYQ3 142 aaPredicted RBP5.75□□□□□ -1.49
CD44-208ENST00000428726 C14orf132Q9NPU4 83 aa5.75□□□□□ -1.49
CD44-208ENST00000428726 CCL18P55774 89 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 REG3AQ06141 175 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 UNQ6190/PRO20217Q6UXQ8 127 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 LINC01600Q96MT4 127 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 PPDPFQ9H3Y8 114 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 A0A087WYN8 130 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 A0A0J9YWU9 116 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 LYRM9A8MSI8 78 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 SDIM1Q6ZPB5 146 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 Q8NAQ8 132 aa5.74□□□□□ -1.49
CD44-208ENST00000428726 A0A087WVE0 104 aa5.73□□□□□ -1.49
CD44-208ENST00000428726 APOC4P55056 127 aa5.73□□□□□ -1.49
CD44-208ENST00000428726 WFDC9Q8NEX5 89 aa5.73□□□□□ -1.49
CD44-208ENST00000428726 IGKV2-28A0A075B6P5 120 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 IGKV2D-28P01615 120 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 SS18Q15532 418 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 MRPL23Q16540 153 aaKnown RBP5.72□□□□□ -1.49
CD44-208ENST00000428726 LINC00528Q8N1L1 170 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 Q8NDZ9 215 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 A0A087WZ39 114 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 DNAH10Q8IVF4 4471 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 A0A1B0GUV1 79 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 SPART-AS1P0CW21 52 aa5.72□□□□□ -1.49
CD44-208ENST00000428726 H3BT86 120 aa5.71□□□□□ -1.5
CD44-208ENST00000428726 COX7A2LO14548 114 aa5.71□□□□□ -1.5
CD44-208ENST00000428726 CRPP02741 224 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms