RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 GCSHP23434 173 aa6.64□□□□□ -1.35
CD44-207ENST00000425428 PGPEP1Q9NXJ5 209 aa6.64□□□□□ -1.35
CD44-207ENST00000425428 NDUFA12Q9UI09 145 aa6.64□□□□□ -1.35
CD44-207ENST00000425428 IGLV5-52A0A0A0MRZ9 124 aa6.64□□□□□ -1.35
CD44-207ENST00000425428 PYY3Q5JQD4 70 aa6.64□□□□□ -1.35
CD44-207ENST00000425428 CDPF1Q6NVV7 123 aa6.64□□□□□ -1.35
CD44-207ENST00000425428 PAM16Q9Y3D7 125 aa6.64□□□□□ -1.35
CD44-207ENST00000425428 SPATA45Q537H7 98 aa6.63□□□□□ -1.35
CD44-207ENST00000425428 MEIG1Q5JSS6 88 aa6.63□□□□□ -1.35
CD44-207ENST00000425428 ZNF815PA8K554 130 aa6.62□□□□□ -1.35
CD44-207ENST00000425428 CNBPP62633 177 aaKnown RBP6.62□□□□□ -1.35
CD44-207ENST00000425428 SCGB1D4Q6XE38 83 aa6.62□□□□□ -1.35
CD44-207ENST00000425428 LINC00526Q96FQ7 95 aa6.62□□□□□ -1.35
CD44-207ENST00000425428 LOC105371267A0A1B0GV96 52 aa6.62□□□□□ -1.35
CD44-207ENST00000425428 RNF151Q2KHN1 245 aa6.62□□□□□ -1.35
CD44-207ENST00000425428 COX17Q14061 63 aa6.61□□□□□ -1.35
CD44-207ENST00000425428 WFDC2Q14508 124 aa6.61□□□□□ -1.35
CD44-207ENST00000425428 KIAA0087Q14695 138 aa6.61□□□□□ -1.35
CD44-207ENST00000425428 C2orf82Q6UX34 121 aa6.61□□□□□ -1.35
CD44-207ENST00000425428 UNQ6190/PRO20217Q6UXQ8 127 aa6.61□□□□□ -1.35
CD44-207ENST00000425428 LOC107984640A0A0U1RRK4 108 aa6.6□□□□□ -1.35
CD44-207ENST00000425428 LINC00158P58513 81 aa6.6□□□□□ -1.35
CD44-207ENST00000425428 ANKRD39Q53RE8 183 aa6.6□□□□□ -1.35
CD44-207ENST00000425428 Q6ZRU5 148 aa6.6□□□□□ -1.35
CD44-207ENST00000425428 COPS9Q8WXC6 57 aa6.6□□□□□ -1.35
CD44-207ENST00000425428 MAJINQ3KP22 176 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 DPH3Q96FX2 82 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 ZNF625Q96I27 306 aaPredicted RBP6.59□□□□□ -1.35
CD44-207ENST00000425428 TMEM238C9JI98 176 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 PFN2P35080 140 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 RPL18AQ02543 176 aaKnown RBP6.59□□□□□ -1.35
CD44-207ENST00000425428 SLC25A34Q6PIV7 304 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 C9orf163Q8N9P6 203 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 MIEN1Q9BRT3 115 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 LINC00474Q9P2X8 69 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 ERG28Q9UKR5 140 aa6.59□□□□□ -1.35
CD44-207ENST00000425428 IGKV2D-26A0A0A0MRZ7 120 aa6.58□□□□□ -1.36
CD44-207ENST00000425428 NDUFC2-KCTD14E9PQ53 114 aa6.58□□□□□ -1.36
CD44-207ENST00000425428 COX8AP10176 69 aa6.58□□□□□ -1.36
CD44-207ENST00000425428 SACSQ9NZJ4 4579 aa6.58□□□□□ -1.36
CD44-207ENST00000425428 C6orf48Q9UBA6 75 aa6.57□□□□□ -1.36
CD44-207ENST00000425428 TSPEAR-AS2P59090 65 aa6.57□□□□□ -1.36
CD44-207ENST00000425428 C12orf57Q99622 126 aa6.57□□□□□ -1.36
CD44-207ENST00000425428 HYDINQ4G0P3 5121 aa6.56□□□□□ -1.36
CD44-207ENST00000425428 TSTD3H0UI37 97 aa6.56□□□□□ -1.36
CD44-207ENST00000425428 TIMM17BO60830 172 aa6.56□□□□□ -1.36
CD44-207ENST00000425428 GAGE2BQ13066 116 aa6.56□□□□□ -1.36
CD44-207ENST00000425428 C10orf25Q5T742 122 aa6.56□□□□□ -1.36
CD44-207ENST00000425428 PCP2Q8IVA1 136 aa6.56□□□□□ -1.36
CD44-207ENST00000425428 C14orf144Q96I85 54 aa6.56□□□□□ -1.36
CD44-207ENST00000425428 A0A0J9YXY3 114 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 A0A0U1RRA0 63 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 C16orf90A8MZG2 172 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 DLEU1O43261 78 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 TLX1NBP0CAT3 122 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 SMIM13P0DJ93 91 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 SRSF9Q13242 221 aaKnown RBP eCLIP6.55□□□□□ -1.36
CD44-207ENST00000425428 GAGE2EQ4V326 116 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 Q6ZVH6 145 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 UQCR10Q9UDW1 63 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 GAGE2DQ9UEU5 116 aa6.55□□□□□ -1.36
CD44-207ENST00000425428 SLPIP03973 132 aa6.54□□□□□ -1.36
CD44-207ENST00000425428 C9orf116Q5BN46 136 aaPredicted RBP6.54□□□□□ -1.36
CD44-207ENST00000425428 BOD1L2Q8IYS8 172 aa6.54□□□□□ -1.36
CD44-207ENST00000425428 IGKV2-24A0A0C4DH68 120 aa6.53□□□□□ -1.36
CD44-207ENST00000425428 MIR7-3HGQ8N6C7 128 aa6.53□□□□□ -1.36
CD44-207ENST00000425428 TTTY13Q9BZ97 58 aa6.53□□□□□ -1.36
CD44-207ENST00000425428 KMT2CQ8NEZ4 4911 aaKnown RBP6.53□□□□□ -1.36
CD44-207ENST00000425428 FRAS1Q86XX4 4008 aa6.53□□□□□ -1.36
CD44-207ENST00000425428 PTTG1IPP53801 180 aa6.52□□□□□ -1.37
CD44-207ENST00000425428 KRTAP10-2P60368 255 aa6.52□□□□□ -1.37
CD44-207ENST00000425428 RPL24P83731 157 aaKnown RBP6.52□□□□□ -1.37
CD44-207ENST00000425428 HIST1H4GQ99525 98 aa6.52□□□□□ -1.37
CD44-207ENST00000425428 DNAH10Q8IVF4 4471 aa6.52□□□□□ -1.37
CD44-207ENST00000425428 IFITM1P13164 125 aa6.52□□□□□ -1.37
CD44-207ENST00000425428 HNRNPA3P51991 378 aaKnown RBP6.51□□□□□ -1.37
CD44-207ENST00000425428 SDIM1Q6ZPB5 146 aa6.51□□□□□ -1.37
CD44-207ENST00000425428 Q6ZRP5 223 aa6.51□□□□□ -1.37
CD44-207ENST00000425428 LINC00518Q8N0U6 118 aa6.51□□□□□ -1.37
CD44-207ENST00000425428 HIGD1BQ9P298 99 aa6.51□□□□□ -1.37
CD44-207ENST00000425428 RYR2Q92736 4967 aa6.51□□□□□ -1.37
CD44-207ENST00000425428 DNAH2Q9P225 4427 aa6.5□□□□□ -1.37
CD44-207ENST00000425428 A0A1B0GVY2 172 aa6.5□□□□□ -1.37
CD44-207ENST00000425428 FUSP35637 526 aaKnown RBP eCLIP6.5□□□□□ -1.37
CD44-207ENST00000425428 LINC01620Q4KN68 170 aa6.5□□□□□ -1.37
CD44-207ENST00000425428 NKAPP1Q8N9T2 125 aa6.5□□□□□ -1.37
CD44-207ENST00000425428 SPANXDQ9BXN6 97 aa6.5□□□□□ -1.37
CD44-207ENST00000425428 SND1-IT1Q9HBX3 110 aa6.5□□□□□ -1.37
CD44-207ENST00000425428 SPANXB1Q9NS25 103 aaPredicted RBP6.5□□□□□ -1.37
CD44-207ENST00000425428 SPANXCQ9NY87 97 aa6.5□□□□□ -1.37
CD44-207ENST00000425428 A0A096LNI7 61 aa6.49□□□□□ -1.37
CD44-207ENST00000425428 PRO1933Q9H354 126 aa6.49□□□□□ -1.37
CD44-207ENST00000425428 XAGE1AQ9HD64 81 aa6.49□□□□□ -1.37
CD44-207ENST00000425428 DNAH17Q9UFH2 4485 aa6.49□□□□□ -1.37
CD44-207ENST00000425428 NPC2P61916 151 aa6.49□□□□□ -1.37
CD44-207ENST00000425428 DAND5Q8N907 189 aa6.49□□□□□ -1.37
CD44-207ENST00000425428 TMEM238LA0A1B0GVL6 79 aa6.48□□□□□ -1.37
CD44-207ENST00000425428 A6NJY4 79 aa6.48□□□□□ -1.37
CD44-207ENST00000425428 TAL2Q16559 108 aa6.48□□□□□ -1.37
CD44-207ENST00000425428 LBHQ53QV2 105 aaPredicted RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms