RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 FP248Q71RG6 208 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-207ENST00000419472 Q86TA4 180 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 KNCNA6PVL3 124 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 BRK1Q8WUW1 75 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 IGLV2-18A0A075B6J9 118 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 TRAV3A0A0B4J244 114 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 TRAV26-2A0A0B4J265 109 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 LHBP01229 141 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 DCANP1Q8TF63 244 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 OTORQ9NRC9 128 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 TGP01266 2768 aa3.36□□□□□ -1.87
VPS13A-207ENST00000419472 TANC2Q9HCD6 1990 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 APELAP0DMC3 54 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 MRPS36P82909 103 aaKnown RBP3.35□□□□□ -1.87
VPS13A-207ENST00000419472 GAFA1Q96PS6 74 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 CCL19Q99731 98 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 MXRA5Q9NR99 2828 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 ZNF469Q96JG9 3925 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-207ENST00000419472 TMEM223A0PJW6 202 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 IGKV1-16P04430 117 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 SAA2P0DJI9 122 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-207ENST00000419472 KRTAP10-9P60411 292 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 C10orf113Q5VZT2 155 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 LYZL1Q6UWQ5 148 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 PATE2Q6UY27 113 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 RNF182Q8N6D2 247 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 ACANP16112 2415 aa3.35□□□□□ -1.87
VPS13A-207ENST00000419472 CHCHD7Q9BUK0 85 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 TMEM14BQ9NUH8 114 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 CELA1Q9UNI1 258 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 DSCAML1Q8TD84 2053 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 COL6A5A8TX70 2615 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.34□□□□□ -1.87
VPS13A-207ENST00000419472 CRIP1P50238 77 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 RHOHQ15669 191 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 MRGPRG-AS1Q2M3A8 158 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 C2orf83Q53S99 150 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 AGRNO00468 2067 aa3.34□□□□□ -1.87
VPS13A-207ENST00000419472 LST1O00453 97 aa3.34□□□□□ -1.88
VPS13A-207ENST00000419472 PRR15Q8IV56 129 aa3.34□□□□□ -1.88
VPS13A-207ENST00000419472 PANO1I0J062 215 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 NDUFB3O43676 98 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 DAND5Q8N907 189 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 COPS9Q8WXC6 57 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 TIMM21Q9BVV7 248 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 A8MUN3 132 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 LINC00305Q7Z4B0 112 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 SLC50A1Q9BRV3 221 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 APCP25054 2843 aa3.33□□□□□ -1.88
VPS13A-207ENST00000419472 GAS8-AS1O95177 125 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 C10orf55Q5SWW7 151 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 FAM223AQ8IWN6 122 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 AMELXQ99217 191 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 KRTAP4-7Q9BYR0 210 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 LINC00574Q9H8X3 128 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 FAM223BA6NKX1 122 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 E7EUB6 86 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 H7C2G1 150 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 COX6CP09669 75 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 NDPQ00604 133 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 LYPD5Q6UWN5 251 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 TOMM6Q96B49 74 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 LAMTOR3Q9UHA4 124 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 ICOSQ9Y6W8 199 aa3.32□□□□□ -1.88
VPS13A-207ENST00000419472 IGHV3-21A0A0B4J1V1 117 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 H7BZZ5 65 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 COX7A2LO14548 114 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 IGLV1-47P01700 117 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 PRCDQ00LT1 54 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 Q6JHZ5 121 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 CNFNQ9BYD5 112 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 IGKV1D-37A0A075B6S9 117 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 IGHG2P01859 326 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 TRGV3P03979 118 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 RNASE2P10153 161 aaKnown RBP3.31□□□□□ -1.88
VPS13A-207ENST00000419472 DEFB116Q30KQ4 102 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 MUSTN1Q8IVN3 82 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 B9D2Q9BPU9 175 aa3.31□□□□□ -1.88
VPS13A-207ENST00000419472 SAA1P0DJI8 122 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-207ENST00000419472 PRB4P10163 310 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-207ENST00000419472 XCL1P47992 114 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 SS18Q15532 418 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 SCGB3A1Q96QR1 104 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 C11orf68Q9H3H3 251 aaKnown RBP3.3□□□□□ -1.88
VPS13A-207ENST00000419472 PHLDA3Q9Y5J5 127 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 TRBV7-6A0A0J9YX20 115 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 TSPEAR-AS2P59090 65 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 HCP5Q6MZN7 132 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 LINC00612Q8N6U2 182 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 CLEC2BQ92478 149 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 TMEM14CQ9P0S9 112 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 LINC00474Q9P2X8 69 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 NOTCH3Q9UM47 2321 aa3.3□□□□□ -1.88
VPS13A-207ENST00000419472 SH2D1AO60880 128 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 CCKP06307 115 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 UBE2D4Q9Y2X8 147 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 IGLV4-69A0A075B6H9 119 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 IGHV1-3A0A0C4DH29 117 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 A6NED7 52 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 C11orf86A6NJI1 115 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms