RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NANOS2P60321 138 aaKnown RBP6.82□□□□□ -1.32
SS18-203ENST00000415083 LINC00959A0A1B0GUT2 108 aa6.81□□□□□ -1.32
SS18-203ENST00000415083 SLPIP03973 132 aa6.81□□□□□ -1.32
SS18-203ENST00000415083 LINC00158P58513 81 aa6.81□□□□□ -1.32
SS18-203ENST00000415083 C9orf153Q5TBE3 101 aa6.81□□□□□ -1.32
SS18-203ENST00000415083 FAM110AQ9BQ89 295 aa6.81□□□□□ -1.32
SS18-203ENST00000415083 C14orf132Q9NPU4 83 aa6.81□□□□□ -1.32
SS18-203ENST00000415083 PKD1L1Q8TDX9 2849 aa6.81□□□□□ -1.32
SS18-203ENST00000415083 TRGV4A0A0C4DH28 118 aa6.8□□□□□ -1.32
SS18-203ENST00000415083 RNASE1P07998 156 aaKnown RBP6.8□□□□□ -1.32
SS18-203ENST00000415083 OBSCN-AS1Q96MR7 158 aa6.8□□□□□ -1.32
SS18-203ENST00000415083 X6R8D5 127 aa6.8□□□□□ -1.32
SS18-203ENST00000415083 IGKV3D-7A0A0C4DH55 119 aa6.8□□□□□ -1.32
SS18-203ENST00000415083 LINC00643Q86TS7 51 aa6.8□□□□□ -1.32
SS18-203ENST00000415083 UNC79Q9P2D8 2635 aa6.8□□□□□ -1.32
SS18-203ENST00000415083 CRPP02741 224 aa6.8□□□□□ -1.32
SS18-203ENST00000415083 PRR3P79522 188 aaKnown RBP6.8□□□□□ -1.32
SS18-203ENST00000415083 FAM222AQ5U5X8 452 aa6.8□□□□□ -1.32
SS18-203ENST00000415083 MALP21145 153 aa6.79□□□□□ -1.32
SS18-203ENST00000415083 LOC107984640A0A0U1RRK4 108 aa6.79□□□□□ -1.32
SS18-203ENST00000415083 ACYP1P07311 99 aa6.79□□□□□ -1.32
SS18-203ENST00000415083 OR13C6PQ8NH95 151 aa6.79□□□□□ -1.32
SS18-203ENST00000415083 SMR3AQ99954 134 aa6.79□□□□□ -1.32
SS18-203ENST00000415083 LY6G6DO95868 133 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 DEFB130BP0DP73 79 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 DEFB130AP0DP74 79 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 CLPSL2Q6UWE3 100 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 A0A096LPF7 62 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 DNAL4O96015 105 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 KIAA0087Q14695 138 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 HELZ2Q9BYK8 2649 aaKnown RBP6.78□□□□□ -1.32
SS18-203ENST00000415083 A0A087WVE0 104 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 TRAV13-2A0A0B4J235 113 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 NCR3O14931 201 aa6.78□□□□□ -1.32
SS18-203ENST00000415083 IBA57-AS1B1ANH7 110 aa6.77□□□□□ -1.33
SS18-203ENST00000415083 LECT2O14960 151 aa6.77□□□□□ -1.33
SS18-203ENST00000415083 PAX4O43316 350 aa6.77□□□□□ -1.33
SS18-203ENST00000415083 PF4P02776 101 aa6.77□□□□□ -1.33
SS18-203ENST00000415083 C3orf22Q8N5N4 141 aa6.77□□□□□ -1.33
SS18-203ENST00000415083 GYPEP15421 78 aa6.76□□□□□ -1.33
SS18-203ENST00000415083 XCL1P47992 114 aa6.76□□□□□ -1.33
SS18-203ENST00000415083 COPS9Q8WXC6 57 aa6.76□□□□□ -1.33
SS18-203ENST00000415083 DNAH1Q9P2D7 4330 aa6.76□□□□□ -1.33
SS18-203ENST00000415083 KIR2DL5BQ8NHK3 375 aa6.76□□□□□ -1.33
SS18-203ENST00000415083 CYSTM1Q9H1C7 97 aa6.76□□□□□ -1.33
SS18-203ENST00000415083 KMT2BQ9UMN6 2715 aaPredicted RBP6.75□□□□□ -1.33
SS18-203ENST00000415083 IMUPQ9GZP8 106 aa6.75□□□□□ -1.33
SS18-203ENST00000415083 LINC00846Q9NV44 126 aa6.75□□□□□ -1.33
SS18-203ENST00000415083 C9orf116Q5BN46 136 aaPredicted RBP6.75□□□□□ -1.33
SS18-203ENST00000415083 LINC00482Q8N8I6 264 aa6.75□□□□□ -1.33
SS18-203ENST00000415083 DNAH3Q8TD57 4116 aa6.75□□□□□ -1.33
SS18-203ENST00000415083 hADV29S1A0JD25 119 aa6.75□□□□□ -1.33
SS18-203ENST00000415083 DEFB4AO15263 64 aa6.75□□□□□ -1.33
SS18-203ENST00000415083 INAFM2P0DMQ5 153 aa6.75□□□□□ -1.33
SS18-203ENST00000415083 HIST1H4AP62805 103 aaKnown RBP6.74□□□□□ -1.33
SS18-203ENST00000415083 A0A1B0GUV1 79 aa6.74□□□□□ -1.33
SS18-203ENST00000415083 C2orf48Q96LS8 159 aa6.74□□□□□ -1.33
SS18-203ENST00000415083 TMEM126AQ9H061 195 aa6.74□□□□□ -1.33
SS18-203ENST00000415083 FASNP49327 2511 aaKnown RBP6.74□□□□□ -1.33
SS18-203ENST00000415083 UQCRQO14949 82 aa6.73□□□□□ -1.33
SS18-203ENST00000415083 HILS1P60008 231 aa6.73□□□□□ -1.33
SS18-203ENST00000415083 LINC00167Q96N53 147 aa6.73□□□□□ -1.33
SS18-203ENST00000415083 CMC4P56277 68 aaPredicted RBP6.73□□□□□ -1.33
SS18-203ENST00000415083 WFDC9Q8NEX5 89 aa6.73□□□□□ -1.33
SS18-203ENST00000415083 HIVEP2P31629 2446 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 CFAP161Q6P656 301 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 Q8IZM0 81 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 LINC00526Q96FQ7 95 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 A0A1B0GX51 115 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 C6orf226Q5I0X4 101 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 C10orf25Q5T742 122 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 LINC00269Q8N2A0 174 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 CELA1Q9UNI1 258 aa6.72□□□□□ -1.33
SS18-203ENST00000415083 NSD1Q96L73 2696 aaPredicted RBP6.71□□□□□ -1.33
SS18-203ENST00000415083 COX7CP15954 63 aa6.71□□□□□ -1.34
SS18-203ENST00000415083 IGLV10-54A0A075B6I4 117 aa6.7□□□□□ -1.34
SS18-203ENST00000415083 CXCL5P42830 114 aa6.7□□□□□ -1.34
SS18-203ENST00000415083 C6orf223Q8N319 242 aa6.7□□□□□ -1.34
SS18-203ENST00000415083 H0YGX0 51 aa6.69□□□□□ -1.34
SS18-203ENST00000415083 LINC01561Q8N1V8 128 aa6.69□□□□□ -1.34
SS18-203ENST00000415083 PRO0255Q9UI72 69 aa6.69□□□□□ -1.34
SS18-203ENST00000415083 CHCHD10Q8WYQ3 142 aaPredicted RBP6.68□□□□□ -1.34
SS18-203ENST00000415083 LYSTQ99698 3801 aa6.68□□□□□ -1.34
SS18-203ENST00000415083 IGHV4-28A0A0C4DH34 117 aa6.68□□□□□ -1.34
SS18-203ENST00000415083 DEFB135Q30KP9 77 aa6.67□□□□□ -1.34
SS18-203ENST00000415083 Q8N814 137 aa6.67□□□□□ -1.34
SS18-203ENST00000415083 M0R2N4 97 aa6.67□□□□□ -1.34
SS18-203ENST00000415083 ATOX1O00244 68 aa6.67□□□□□ -1.34
SS18-203ENST00000415083 RPL18AQ02543 176 aaKnown RBP6.67□□□□□ -1.34
SS18-203ENST00000415083 CD164L2Q6UWJ8 174 aa6.67□□□□□ -1.34
SS18-203ENST00000415083 TEP1Q99973 2627 aaKnown RBP6.66□□□□□ -1.34
SS18-203ENST00000415083 TENM3Q9P273 2699 aa6.66□□□□□ -1.34
SS18-203ENST00000415083 Q8NAQ8 132 aa6.66□□□□□ -1.34
SS18-203ENST00000415083 ORMDL1Q9P0S3 153 aa6.66□□□□□ -1.34
SS18-203ENST00000415083 USP17L23D6RBM5 183 aa6.66□□□□□ -1.34
SS18-203ENST00000415083 REG3AQ06141 175 aa6.66□□□□□ -1.34
SS18-203ENST00000415083 UNQ6190/PRO20217Q6UXQ8 127 aa6.66□□□□□ -1.34
SS18-203ENST00000415083 FAM19A5Q7Z5A7 132 aaPredicted RBP6.66□□□□□ -1.34
SS18-203ENST00000415083 TRAV23DV6A0A075B6W5 121 aa6.65□□□□□ -1.34
SS18-203ENST00000415083 DSCR8Q96T75 97 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms