RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 C6orf226Q5I0X4 101 aa12.08□□□□□ -0.47
RTN4-207ENST00000402434 TOMM7Q9P0U1 55 aa12.08□□□□□ -0.47
RTN4-207ENST00000402434 IGLC3P0DOY3 106 aa12.08□□□□□ -0.48
RTN4-207ENST00000402434 NDUFA6P56556 154 aa12.08□□□□□ -0.48
RTN4-207ENST00000402434 RPL18AQ02543 176 aaKnown RBP12.08□□□□□ -0.48
RTN4-207ENST00000402434 BAGE3Q86Y29 109 aa12.08□□□□□ -0.48
RTN4-207ENST00000402434 SCO1O75880 301 aa12.06□□□□□ -0.48
RTN4-207ENST00000402434 CKS1BP61024 79 aa12.06□□□□□ -0.48
RTN4-207ENST00000402434 Q6ZRP5 223 aa12.06□□□□□ -0.48
RTN4-207ENST00000402434 HSBP1O75506 76 aa12.05□□□□□ -0.48
RTN4-207ENST00000402434 LINC00310P59036 64 aa12.04□□□□□ -0.48
RTN4-207ENST00000402434 A0A1W2PNN7 141 aa12.03□□□□□ -0.48
RTN4-207ENST00000402434 H3BRM9 83 aa12.03□□□□□ -0.48
RTN4-207ENST00000402434 C7orf33Q8WU49 177 aa12.03□□□□□ -0.48
RTN4-207ENST00000402434 NDUFC2-KCTD14E9PQ53 114 aa12.02□□□□□ -0.48
RTN4-207ENST00000402434 SPINK8P0C7L1 97 aa12.02□□□□□ -0.48
RTN4-207ENST00000402434 CXCL5P42830 114 aa12.02□□□□□ -0.48
RTN4-207ENST00000402434 C9orf116Q5BN46 136 aaPredicted RBP12.02□□□□□ -0.48
RTN4-207ENST00000402434 FAM19A2Q8N3H0 131 aa12.02□□□□□ -0.48
RTN4-207ENST00000402434 IFI27L1Q96BM0 104 aa12.02□□□□□ -0.48
RTN4-207ENST00000402434 F8VRH5 84 aa12.02□□□□□ -0.49
RTN4-207ENST00000402434 SERF1AO75920 110 aa12.02□□□□□ -0.49
RTN4-207ENST00000402434 ZNF22P17026 224 aaPredicted RBP12.02□□□□□ -0.49
RTN4-207ENST00000402434 COX7B2Q8TF08 81 aa12.02□□□□□ -0.49
RTN4-207ENST00000402434 IGLV5-39A0A0G2JS06 123 aa12.01□□□□□ -0.49
RTN4-207ENST00000402434 TRAV12-1A0A0B4J245 112 aa12□□□□□ -0.49
RTN4-207ENST00000402434 C11orf86A6NJI1 115 aa12□□□□□ -0.49
RTN4-207ENST00000402434 GAGE2EQ4V326 116 aa11.99□□□□□ -0.49
RTN4-207ENST00000402434 GAGE2DQ9UEU5 116 aa11.99□□□□□ -0.49
RTN4-207ENST00000402434 CHTOPQ9Y3Y2 248 aaKnown RBP11.99□□□□□ -0.49
RTN4-207ENST00000402434 NUPR1O60356 82 aa11.98□□□□□ -0.49
RTN4-207ENST00000402434 HNRNPA3P51991 378 aaKnown RBP11.97□□□□□ -0.49
RTN4-207ENST00000402434 MYCBP2O75592 4640 aa11.97□□□□□ -0.49
RTN4-207ENST00000402434 FAM168BA1KXE4 195 aa11.95□□□□□ -0.5
RTN4-207ENST00000402434 LEPROTL1O95214 131 aa11.95□□□□□ -0.5
RTN4-207ENST00000402434 DMBT1Q9UGM3 2413 aaPredicted RBP11.95□□□□□ -0.5
RTN4-207ENST00000402434 PRR3P79522 188 aaKnown RBP11.95□□□□□ -0.5
RTN4-207ENST00000402434 C9orf129Q5T035 196 aaKnown RBP11.95□□□□□ -0.5
RTN4-207ENST00000402434 TMEM170BQ5T4T1 132 aa11.95□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BKO60814 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BJP06899 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BOP23527 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BBP33778 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BDP58876 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BCP62807 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST2H2BEQ16778 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.94□□□□□ -0.5
RTN4-207ENST00000402434 KRTAP7-1Q8IUC3 87 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BHQ93079 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BNQ99877 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 HIST1H2BMQ99879 126 aa11.94□□□□□ -0.5
RTN4-207ENST00000402434 ATP6V1G1O75348 118 aa11.93□□□□□ -0.5
RTN4-207ENST00000402434 PHF5AQ7RTV0 110 aaKnown RBP11.92□□□□□ -0.5
RTN4-207ENST00000402434 HSPB8Q9UJY1 196 aa11.92□□□□□ -0.5
RTN4-207ENST00000402434 KRTAP29-1A8MX34 341 aaPredicted RBP11.91□□□□□ -0.5
RTN4-207ENST00000402434 ODF1Q14990 250 aa11.91□□□□□ -0.5
RTN4-207ENST00000402434 FAM19A5Q7Z5A7 132 aaPredicted RBP11.9□□□□□ -0.5
RTN4-207ENST00000402434 TMEM223A0PJW6 202 aa11.89□□□□□ -0.51
RTN4-207ENST00000402434 XAGE1AQ9HD64 81 aa11.89□□□□□ -0.51
RTN4-207ENST00000402434 FABP4P15090 132 aa11.89□□□□□ -0.51
RTN4-207ENST00000402434 H0Y8G0 127 aa11.87□□□□□ -0.51
RTN4-207ENST00000402434 OXTP01178 125 aa11.87□□□□□ -0.51
RTN4-207ENST00000402434 SFTA2Q6UW10 78 aa11.87□□□□□ -0.51
RTN4-207ENST00000402434 PSORS1C2Q9UIG4 136 aa11.87□□□□□ -0.51
RTN4-207ENST00000402434 M0QXV9 152 aa11.86□□□□□ -0.51
RTN4-207ENST00000402434 S100A1P23297 94 aa11.86□□□□□ -0.51
RTN4-207ENST00000402434 ZNF625Q96I27 306 aaPredicted RBP11.86□□□□□ -0.51
RTN4-207ENST00000402434 SERTAD4-AS1Q5TG53 156 aa11.85□□□□□ -0.51
RTN4-207ENST00000402434 PKHD1L1Q86WI1 4243 aa11.85□□□□□ -0.51
RTN4-207ENST00000402434 KRTAP11-1Q8IUC1 163 aa11.84□□□□□ -0.51
RTN4-207ENST00000402434 PLNP26678 52 aa11.83□□□□□ -0.52
RTN4-207ENST00000402434 SRSF9Q13242 221 aaKnown RBP eCLIP11.83□□□□□ -0.52
RTN4-207ENST00000402434 COX17Q14061 63 aa11.83□□□□□ -0.52
RTN4-207ENST00000402434 COA6Q5JTJ3 125 aaKnown RBP11.83□□□□□ -0.52
RTN4-207ENST00000402434 PFN2P35080 140 aa11.83□□□□□ -0.52
RTN4-207ENST00000402434 MAP1LC3CQ9BXW4 147 aa11.83□□□□□ -0.52
RTN4-207ENST00000402434 ERG28Q9UKR5 140 aa11.83□□□□□ -0.52
RTN4-207ENST00000402434 J3QL48 77 aa11.82□□□□□ -0.52
RTN4-207ENST00000402434 SPINK6Q6UWN8 80 aa11.82□□□□□ -0.52
RTN4-207ENST00000402434 PLA2G2DQ9UNK4 145 aa11.82□□□□□ -0.52
RTN4-207ENST00000402434 C22orf24Q9Y442 160 aa11.82□□□□□ -0.52
RTN4-207ENST00000402434 TP73-AS1Q9UF72 201 aa11.81□□□□□ -0.52
RTN4-207ENST00000402434 DPM2O94777 84 aa11.8□□□□□ -0.52
RTN4-207ENST00000402434 LRP1Q07954 4544 aaKnown RBP11.79□□□□□ -0.52
RTN4-207ENST00000402434 C1orf137Q5JT78 98 aa11.79□□□□□ -0.52
RTN4-207ENST00000402434 UBE2BP63146 152 aa11.78□□□□□ -0.52
RTN4-207ENST00000402434 LBHQ53QV2 105 aaPredicted RBP11.78□□□□□ -0.52
RTN4-207ENST00000402434 PMCHL2Q9BQD1 86 aa11.78□□□□□ -0.52
RTN4-207ENST00000402434 IGKCP01834 107 aa11.77□□□□□ -0.52
RTN4-207ENST00000402434 MRPL55Q7Z7F7 128 aaKnown RBP11.77□□□□□ -0.52
RTN4-207ENST00000402434 SND1-IT1Q9HBX3 110 aa11.77□□□□□ -0.52
RTN4-207ENST00000402434 IGLV5-37A0A075B6J1 123 aa11.76□□□□□ -0.53
RTN4-207ENST00000402434 SYS1-DBNDD2H3BUS1 97 aa11.76□□□□□ -0.53
RTN4-207ENST00000402434 IGLV7-43P04211 117 aa11.76□□□□□ -0.53
RTN4-207ENST00000402434 HERV-K104P63124 156 aa11.75□□□□□ -0.53
RTN4-207ENST00000402434 NDUFA12Q9UI09 145 aa11.75□□□□□ -0.53
RTN4-207ENST00000402434 LEPROTO15243 131 aa11.74□□□□□ -0.53
RTN4-207ENST00000402434 PLEKHB2Q96CS7 222 aa11.74□□□□□ -0.53
RTN4-207ENST00000402434 HERC1Q15751 4861 aa11.73□□□□□ -0.53
RTN4-207ENST00000402434 LINC00158P58513 81 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms