RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GCSHP23434 173 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 XCL1P47992 114 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 KRTAP10-1P60331 282 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 KRTAP10-4P60372 401 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-202ENST00000394943 C21orf62-AS1Q17RA5 79 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 RNASE13Q5GAN3 156 aaKnown RBP4.48□□□□□ -1.69
LIMA1-202ENST00000394943 CHAC1Q9BUX1 264 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 TRAV13-1A0A0B4J241 112 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 E9PLD3 99 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 LCE2BO14633 110 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 LEPROTO15243 131 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 CLPSL2Q6UWE3 100 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 C16orf90A8MZG2 172 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 DPM2O94777 84 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 PTTG1IPP53801 180 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 S100A12P80511 92 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 NDUFA1O15239 70 aa4.47□□□□□ -1.69
LIMA1-202ENST00000394943 XGP55808 180 aa4.47□□□□□ -1.69
LIMA1-202ENST00000394943 C6orf48Q9UBA6 75 aa4.47□□□□□ -1.69
LIMA1-202ENST00000394943 PSCAO43653 123 aa4.47□□□□□ -1.69
LIMA1-202ENST00000394943 TIMM17BO60830 172 aa4.47□□□□□ -1.69
LIMA1-202ENST00000394943 COX7B2Q8TF08 81 aa4.47□□□□□ -1.69
LIMA1-202ENST00000394943 IGKCP01834 107 aa4.47□□□□□ -1.69
LIMA1-202ENST00000394943 FAT3Q8TDW7 4589 aa4.46□□□□□ -1.69
LIMA1-202ENST00000394943 IGLV5-52A0A0A0MRZ9 124 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 SPAG11BQ08648 103 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 SYCNQ0VAF6 134 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 C4orf48Q5BLP8 95 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 Q6ZRU5 148 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 ORAOV1Q8WV07 137 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 LINC00474Q9P2X8 69 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 PRSS2P07478 247 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 HERV-K104P63124 156 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 CARD19Q96LW7 228 aa4.46□□□□□ -1.7
LIMA1-202ENST00000394943 LINC00587B1AMM8 73 aa4.45□□□□□ -1.7
LIMA1-202ENST00000394943 LOC107984640A0A0U1RRK4 108 aa4.45□□□□□ -1.7
LIMA1-202ENST00000394943 GEMIN7Q9H840 131 aaKnown RBP4.45□□□□□ -1.7
LIMA1-202ENST00000394943 TP73-AS1Q9UF72 201 aa4.45□□□□□ -1.7
LIMA1-202ENST00000394943 C5orf38Q86SI9 138 aa4.45□□□□□ -1.7
LIMA1-202ENST00000394943 KRTAP7-1Q8IUC3 87 aa4.45□□□□□ -1.7
LIMA1-202ENST00000394943 PLEKHB2Q96CS7 222 aa4.45□□□□□ -1.7
LIMA1-202ENST00000394943 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-202ENST00000394943 A0A0J9YXY3 114 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 NDUFC2-KCTD14E9PQ53 114 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 DLEU1O43261 78 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 LINC00518Q8N0U6 118 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 C10orf25Q5T742 122 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 LINC00469Q8N7U9 141 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 LITAFQ99732 161 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 KRTAP17-1Q9BYP8 105 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 hDV102S1A0JD36 115 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 MALP21145 153 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 TSPEAR-AS2P59090 65 aa4.44□□□□□ -1.7
LIMA1-202ENST00000394943 C20orf202A1L168 122 aa4.43□□□□□ -1.7
LIMA1-202ENST00000394943 J3QL48 77 aa4.43□□□□□ -1.7
LIMA1-202ENST00000394943 JOSD1Q15040 202 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-202ENST00000394943 ZNF561-AS1K7EIQ3 104 aa4.43□□□□□ -1.7
LIMA1-202ENST00000394943 FAM30AQ9NZY2 134 aa4.43□□□□□ -1.7
LIMA1-202ENST00000394943 TSTD3H0UI37 97 aa4.42□□□□□ -1.7
LIMA1-202ENST00000394943 SPINK8P0C7L1 97 aa4.42□□□□□ -1.7
LIMA1-202ENST00000394943 UNQ6190/PRO20217Q6UXQ8 127 aa4.42□□□□□ -1.7
LIMA1-202ENST00000394943 Q6ZRP5 223 aa4.42□□□□□ -1.7
LIMA1-202ENST00000394943 PANO1I0J062 215 aa4.42□□□□□ -1.7
LIMA1-202ENST00000394943 BOD1L2Q8IYS8 172 aa4.42□□□□□ -1.7
LIMA1-202ENST00000394943 C9orf129Q5T035 196 aaKnown RBP4.42□□□□□ -1.7
LIMA1-202ENST00000394943 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-202ENST00000394943 A0A096LNI7 61 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 HIGD2BQ4VC39 106 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 CAMK2N2Q96S95 79 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 SPANXDQ9BXN6 97 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 SPANXCQ9NY87 97 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 A0A1B0GV90 55 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 KRTDAPP60985 99 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 HERVK_113P61574 105 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 J3QQQ9 107 aa4.41□□□□□ -1.7
LIMA1-202ENST00000394943 NDUFC2O95298 119 aa4.4□□□□□ -1.7
LIMA1-202ENST00000394943 Q6ZVH6 145 aa4.4□□□□□ -1.7
LIMA1-202ENST00000394943 SPANXB1Q9NS25 103 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-202ENST00000394943 IGKV3OR2-268A0A0C4DH90 116 aa4.4□□□□□ -1.71
LIMA1-202ENST00000394943 LECT2O14960 151 aa4.4□□□□□ -1.71
LIMA1-202ENST00000394943 LINC00526Q96FQ7 95 aa4.4□□□□□ -1.71
LIMA1-202ENST00000394943 MYMXA0A1B0GTQ4 84 aa4.4□□□□□ -1.71
LIMA1-202ENST00000394943 Q8N1X5 172 aa4.4□□□□□ -1.71
LIMA1-202ENST00000394943 ERG28Q9UKR5 140 aa4.4□□□□□ -1.71
LIMA1-202ENST00000394943 PAM16Q9Y3D7 125 aa4.4□□□□□ -1.71
LIMA1-202ENST00000394943 FAT1Q14517 4588 aa4.39□□□□□ -1.71
LIMA1-202ENST00000394943 ATOH7Q8N100 152 aa4.39□□□□□ -1.71
LIMA1-202ENST00000394943 IGKV2D-26A0A0A0MRZ7 120 aa4.39□□□□□ -1.71
LIMA1-202ENST00000394943 TMEM170BQ5T4T1 132 aa4.39□□□□□ -1.71
LIMA1-202ENST00000394943 CIRBP-AS1Q8TBR5 109 aa4.39□□□□□ -1.71
LIMA1-202ENST00000394943 C6orf226Q5I0X4 101 aa4.39□□□□□ -1.71
LIMA1-202ENST00000394943 C2orf82Q6UX34 121 aa4.39□□□□□ -1.71
LIMA1-202ENST00000394943 TRBV10-2A0A0K0K1G8 114 aa4.38□□□□□ -1.71
LIMA1-202ENST00000394943 VPREB1P12018 145 aa4.38□□□□□ -1.71
LIMA1-202ENST00000394943 ANKRD39Q53RE8 183 aa4.38□□□□□ -1.71
LIMA1-202ENST00000394943 SCXQ7RTU7 201 aa4.38□□□□□ -1.71
LIMA1-202ENST00000394943 HIGD1BQ9P298 99 aa4.38□□□□□ -1.71
LIMA1-202ENST00000394943 KIAA1109Q2LD37 5005 aa4.38□□□□□ -1.71
LIMA1-202ENST00000394943 NDUFA12Q9UI09 145 aa4.38□□□□□ -1.71
LIMA1-202ENST00000394943 CKS1BP61024 79 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms